Wall clock time and date at job start Tue Mar 31 2020 18:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 C 1.52996 * 109.46894 * 184.99623 * 4 2 1 6 6 H 1.09000 * 109.47333 * 305.00136 * 5 4 2 7 7 C 1.53005 * 109.46993 * 185.00056 * 5 4 2 8 8 N 1.46500 * 109.47059 * 65.00370 * 5 4 2 9 9 C 1.34781 * 119.99835 * 204.99719 * 8 5 4 10 10 O 1.21652 * 120.00004 * 359.97438 * 9 8 5 11 11 C 1.46987 * 119.99836 * 179.97438 * 9 8 5 12 12 C 1.33664 * 124.63909 * 180.02562 * 11 9 8 13 13 C 1.40322 * 115.50827 * 180.02562 * 12 11 9 14 14 C 1.41635 * 129.14645 * 179.97438 * 13 12 11 15 15 C 1.36538 * 118.85483 * 179.97438 * 14 13 12 16 16 C 1.38762 * 119.72339 * 0.02562 * 15 14 13 17 17 N 1.31290 * 121.08031 * 359.97438 * 16 15 14 18 18 C 1.33443 * 121.97746 * 0.02562 * 17 16 15 19 19 S 1.75471 * 124.63731 * 359.70209 * 11 9 8 20 20 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 21 21 C 1.36936 * 119.99910 * 84.99534 * 20 2 1 22 22 H 1.07996 * 119.99948 * 0.02562 * 21 20 2 23 23 C 1.38815 * 119.99722 * 180.02562 * 21 20 2 24 24 N 1.31621 * 120.00278 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99762 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47275 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47411 * 120.00175 * 25 23 21 28 28 H 1.48503 * 109.46970 * 240.00025 * 25 23 21 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 33 33 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 34 34 H 1.09003 * 109.47291 * 60.00559 * 7 5 4 35 35 H 1.09000 * 109.46901 * 180.02562 * 7 5 4 36 36 H 1.09000 * 109.47146 * 300.00194 * 7 5 4 37 37 H 0.97002 * 119.99992 * 25.00166 * 8 5 4 38 38 H 1.07997 * 122.25001 * 0.02562 * 12 11 9 39 39 H 1.08000 * 120.57370 * 359.97438 * 14 13 12 40 40 H 1.08002 * 120.13147 * 180.02562 * 15 14 13 41 41 H 1.07993 * 119.46455 * 179.97438 * 16 15 14 42 42 H 0.96997 * 120.00110 * 265.00363 * 20 2 1 43 43 H 0.96997 * 119.99556 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3135 6 1 3.9954 -0.9923 0.3866 7 6 4.0852 -1.4384 2.4923 8 7 3.9480 0.7893 1.4923 9 6 5.1613 1.2135 1.0865 10 8 5.9384 0.4314 0.5723 11 6 5.5455 2.6209 1.2654 12 6 6.7210 3.1402 0.8978 13 6 6.8856 4.5088 1.1601 14 6 7.9995 5.3424 0.8950 15 6 7.9328 6.6614 1.2416 16 6 6.7847 7.1575 1.8427 17 7 5.7560 6.3787 2.0854 18 6 5.7613 5.0821 1.7700 19 16 4.5206 3.8510 1.9833 20 7 2.0184 -0.6906 -1.1962 21 6 2.1490 -0.0075 -2.3758 22 1 1.8925 1.0405 -2.4241 23 6 2.6112 -0.6620 -3.5093 24 7 2.9234 -1.9393 -3.4505 25 14 2.7902 0.2700 -5.1183 26 1 2.3762 1.6824 -4.9209 27 1 4.2069 0.2262 -5.5608 28 1 1.9289 -0.3578 -6.1524 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.8002 -2.4820 2.3593 35 1 5.1715 -1.3611 2.5384 36 1 3.6547 -1.0594 3.4192 37 1 3.3285 1.4128 1.9028 38 1 7.4925 2.5463 0.4304 39 1 8.8865 4.9417 0.4268 40 1 8.7701 7.3157 1.0486 41 1 6.7366 8.2013 2.1155 42 1 2.2490 -1.6317 -1.1527 43 1 3.2460 -2.3967 -4.2427 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135852843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:56 Heat of formation + Delta-G solvation = 23.048752 kcal Electronic energy + Delta-G solvation = -25774.048600 eV Core-core repulsion = 22138.658685 eV Total energy + Delta-G solvation = -3635.389916 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.67907 -39.64759 -37.03363 -35.83618 -34.47894 -32.68331 -32.20741 -31.08819 -29.63912 -28.57473 -26.34146 -25.22871 -24.42796 -23.59267 -22.32629 -20.77761 -20.33559 -19.71868 -18.79925 -17.49758 -17.10212 -16.58368 -16.03580 -15.53766 -15.26202 -15.14631 -14.73979 -14.49444 -14.03055 -13.93787 -13.63043 -13.45991 -13.14099 -13.04948 -12.74853 -12.56714 -12.18343 -12.02850 -11.82684 -11.72504 -11.59876 -11.27931 -11.04642 -10.82279 -10.68006 -10.60793 -10.43835 -10.19168 -9.89409 -9.87225 -9.80416 -9.59724 -9.02266 -8.85998 -8.77200 -8.28687 -6.89598 -5.70690 -2.98453 -0.02940 0.75644 0.93040 1.57375 1.74476 3.16560 3.26407 3.43487 3.46983 3.52548 3.54527 4.12277 4.32190 4.48604 4.58418 4.64638 4.80263 4.95187 5.11172 5.24230 5.38344 5.40857 5.48129 5.60345 5.63883 5.68433 5.80593 5.87714 5.91039 5.92948 6.02623 6.13096 6.17988 6.29393 6.34469 6.44088 6.57159 6.65864 6.77101 6.91521 7.09057 7.39174 7.62276 7.76060 8.32736 8.47812 9.59345 10.16266 10.50661 11.52144 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010968 B = 0.003611 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.168242 B = 7753.201301 C = 8890.489608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.170 3.830 3 H 0.045 0.955 4 C -0.132 4.132 5 C 0.144 3.856 6 H 0.110 0.890 7 C -0.162 4.162 8 N -0.707 5.707 9 C 0.588 3.412 10 O -0.513 6.513 11 C -0.210 4.210 12 C -0.047 4.047 13 C -0.130 4.130 14 C -0.022 4.022 15 C -0.180 4.180 16 C 0.141 3.859 17 N -0.459 5.459 18 C 0.056 3.944 19 S 0.178 5.822 20 N -0.720 5.720 21 C -0.233 4.233 22 H 0.068 0.932 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.901 3.099 26 H -0.282 1.282 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.392 0.608 38 H 0.160 0.840 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.167 0.833 42 H 0.383 0.617 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.309 14.254 15.930 22.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.060 3.940 3 H 0.063 0.937 4 C -0.171 4.171 5 C 0.040 3.960 6 H 0.127 0.873 7 C -0.220 4.220 8 N -0.358 5.358 9 C 0.371 3.629 10 O -0.390 6.390 11 C -0.329 4.329 12 C -0.079 4.079 13 C -0.141 4.141 14 C -0.050 4.050 15 C -0.203 4.203 16 C -0.031 4.031 17 N -0.169 5.169 18 C -0.187 4.187 19 S 0.443 5.557 20 N -0.362 5.362 21 C -0.365 4.365 22 H 0.085 0.915 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.733 3.267 26 H -0.207 1.207 27 H -0.219 1.219 28 H -0.220 1.220 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.226 0.774 38 H 0.177 0.823 39 H 0.161 0.839 40 H 0.161 0.839 41 H 0.184 0.816 42 H 0.217 0.783 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.551 13.948 16.413 22.243 hybrid contribution 1.958 0.289 -1.816 2.685 sum 7.508 14.238 14.597 21.729 Atomic orbital electron populations 1.22452 0.99415 1.00836 0.99838 1.20234 0.91684 0.95521 0.86534 0.93690 1.22188 0.93446 1.02464 0.98969 1.21130 0.95423 0.79224 1.00199 0.87259 1.22194 1.01594 1.00281 0.97926 1.45866 1.15637 1.12189 1.62076 1.16889 0.82597 0.84829 0.78539 1.90861 1.51120 1.54438 1.42576 1.23999 0.99792 0.98777 1.10322 1.20096 0.97446 0.92793 0.97531 1.19040 0.96327 0.94619 1.04145 1.21305 0.96496 0.92921 0.94287 1.21722 1.00423 0.96217 1.01892 1.22903 0.87887 0.99369 0.92943 1.67260 1.29099 1.02326 1.18175 1.23858 0.97219 0.96019 1.01649 1.84184 1.14082 0.95570 1.61886 1.42400 1.77982 1.10556 1.05263 1.19208 1.36259 0.93692 0.87312 0.91451 1.24683 1.02235 0.95926 0.97910 1.69656 1.51095 1.08581 1.28634 0.86200 0.77316 0.78818 0.84383 1.20696 1.21926 1.21953 0.94664 0.92867 0.93485 0.91930 0.90305 0.91440 0.92424 0.92999 0.77373 0.82285 0.83901 0.83872 0.81632 0.78325 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 9.49 37.16 0.35 -2.55 16 2 C 0.17 3.24 2.84 -67.93 -0.19 3.05 16 3 H 0.05 0.89 7.56 -51.93 -0.39 0.49 16 4 C -0.13 -2.00 4.29 -26.73 -0.11 -2.12 16 5 C 0.14 2.32 2.52 -67.93 -0.17 2.15 16 6 H 0.11 2.30 7.05 -51.93 -0.37 1.93 16 7 C -0.16 -2.19 9.48 37.16 0.35 -1.83 16 8 N -0.71 -10.76 4.44 -55.02 -0.24 -11.01 16 9 C 0.59 10.07 7.76 -12.71 -0.10 9.97 16 10 O -0.51 -10.73 16.38 5.23 0.09 -10.64 16 11 C -0.21 -3.04 6.31 -37.64 -0.24 -3.28 16 12 C -0.05 -0.62 9.79 -40.40 -0.40 -1.02 16 13 C -0.13 -1.57 5.88 -107.09 -0.63 -2.20 16 14 C -0.02 -0.20 10.16 -38.90 -0.40 -0.60 16 15 C -0.18 -1.30 10.01 -40.00 -0.40 -1.70 16 16 C 0.14 1.19 11.18 -17.59 -0.20 0.99 16 17 N -0.46 -5.51 10.39 -11.65 -0.12 -5.64 16 18 C 0.06 0.73 7.66 -16.13 -0.12 0.60 16 19 S 0.18 2.21 22.25 -107.50 -2.39 -0.19 16 20 N -0.72 -17.68 4.49 -53.42 -0.24 -17.92 16 21 C -0.23 -6.52 9.93 -15.06 -0.15 -6.67 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 25 Si 0.90 23.08 29.55 -169.99 -5.02 18.05 16 26 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 28 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.39 5.00 7.65 -40.82 -0.31 4.69 16 38 H 0.16 2.03 7.96 -52.49 -0.42 1.61 16 39 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 41 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 42 H 0.38 10.04 7.80 -40.82 -0.32 9.73 16 43 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 378.16 15.07 5.70 5.70 Total: -1.00 -34.58 378.16 -10.01 -44.59 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -6.00 Total: 10.46 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -2.50 Total: -5.62 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: 0.12 Total: -62.34 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.39 Total: -0.19 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.58 -10.01 -44.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135852843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.638 kcal (2) G-P(sol) polarization free energy of solvation -34.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds