Wall clock time and date at job start Tue Mar 31 2020 18:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 C 1.52996 * 109.46894 * 184.99623 * 4 2 1 6 6 H 1.09000 * 109.47333 * 305.00136 * 5 4 2 7 7 C 1.53005 * 109.46993 * 185.00056 * 5 4 2 8 8 N 1.46500 * 109.47059 * 65.00370 * 5 4 2 9 9 C 1.34781 * 119.99835 * 204.99719 * 8 5 4 10 10 O 1.21652 * 120.00004 * 359.97438 * 9 8 5 11 11 C 1.46987 * 119.99836 * 179.97438 * 9 8 5 12 12 C 1.33664 * 124.63909 * 180.02562 * 11 9 8 13 13 C 1.40322 * 115.50827 * 180.02562 * 12 11 9 14 14 C 1.41635 * 129.14645 * 179.97438 * 13 12 11 15 15 C 1.36538 * 118.85483 * 179.97438 * 14 13 12 16 16 C 1.38762 * 119.72339 * 0.02562 * 15 14 13 17 17 N 1.31290 * 121.08031 * 359.97438 * 16 15 14 18 18 C 1.33443 * 121.97746 * 0.02562 * 17 16 15 19 19 S 1.75471 * 124.63731 * 359.70209 * 11 9 8 20 20 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 21 21 C 1.36936 * 119.99910 * 84.99534 * 20 2 1 22 22 H 1.07996 * 119.99948 * 0.02562 * 21 20 2 23 23 C 1.38815 * 119.99722 * 180.02562 * 21 20 2 24 24 N 1.31621 * 120.00278 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99762 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47275 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47411 * 120.00175 * 25 23 21 28 28 H 1.48503 * 109.46970 * 240.00025 * 25 23 21 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 33 33 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 34 34 H 1.09003 * 109.47291 * 60.00559 * 7 5 4 35 35 H 1.09000 * 109.46901 * 180.02562 * 7 5 4 36 36 H 1.09000 * 109.47146 * 300.00194 * 7 5 4 37 37 H 0.97002 * 119.99992 * 25.00166 * 8 5 4 38 38 H 1.07997 * 122.25001 * 0.02562 * 12 11 9 39 39 H 1.08000 * 120.57370 * 359.97438 * 14 13 12 40 40 H 1.08002 * 120.13147 * 180.02562 * 15 14 13 41 41 H 1.07993 * 119.46455 * 179.97438 * 16 15 14 42 42 H 0.96997 * 120.00110 * 265.00363 * 20 2 1 43 43 H 0.96997 * 119.99556 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3135 6 1 3.9954 -0.9923 0.3866 7 6 4.0852 -1.4384 2.4923 8 7 3.9480 0.7893 1.4923 9 6 5.1613 1.2135 1.0865 10 8 5.9384 0.4314 0.5723 11 6 5.5455 2.6209 1.2654 12 6 6.7210 3.1402 0.8978 13 6 6.8856 4.5088 1.1601 14 6 7.9995 5.3424 0.8950 15 6 7.9328 6.6614 1.2416 16 6 6.7847 7.1575 1.8427 17 7 5.7560 6.3787 2.0854 18 6 5.7613 5.0821 1.7700 19 16 4.5206 3.8510 1.9833 20 7 2.0184 -0.6906 -1.1962 21 6 2.1490 -0.0075 -2.3758 22 1 1.8925 1.0405 -2.4241 23 6 2.6112 -0.6620 -3.5093 24 7 2.9234 -1.9393 -3.4505 25 14 2.7902 0.2700 -5.1183 26 1 2.3762 1.6824 -4.9209 27 1 4.2069 0.2262 -5.5608 28 1 1.9289 -0.3578 -6.1524 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.8002 -2.4820 2.3593 35 1 5.1715 -1.3611 2.5384 36 1 3.6547 -1.0594 3.4192 37 1 3.3285 1.4128 1.9028 38 1 7.4925 2.5463 0.4304 39 1 8.8865 4.9417 0.4268 40 1 8.7701 7.3157 1.0486 41 1 6.7366 8.2013 2.1155 42 1 2.2490 -1.6317 -1.1527 43 1 3.2460 -2.3967 -4.2427 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135852843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:55 Heat of formation + Delta-G solvation = -0.447731 kcal Electronic energy + Delta-G solvation = -25775.067484 eV Core-core repulsion = 22138.658685 eV Total energy + Delta-G solvation = -3636.408800 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.52595 -40.90623 -38.46182 -36.86677 -36.09264 -34.07284 -33.40225 -32.43458 -30.68708 -30.33916 -27.62794 -26.21868 -25.66022 -25.21738 -23.33421 -22.06385 -21.47933 -21.20870 -19.82601 -19.22731 -18.31078 -17.70308 -16.97549 -16.73520 -16.52408 -16.22087 -16.11358 -15.65000 -15.57092 -15.49987 -15.12818 -14.54677 -14.32588 -14.12885 -14.05629 -13.63216 -13.43483 -13.28591 -13.18934 -12.96280 -12.83355 -12.81444 -12.68074 -12.29435 -12.24743 -12.16370 -11.85631 -11.58547 -11.45638 -11.41296 -11.25835 -10.93659 -10.57495 -10.20871 -9.80841 -9.18899 -8.95739 -7.93100 -5.18302 -0.93866 0.00703 0.03410 0.60904 0.80130 1.41049 1.42676 1.51108 1.94351 2.07812 2.54937 2.63784 3.35823 3.41360 3.55589 3.57648 3.78042 3.86182 3.98732 3.99766 4.09607 4.28908 4.37077 4.47267 4.51596 4.61927 4.66513 4.76931 4.77626 4.81280 4.90234 4.97468 5.01869 5.09323 5.15106 5.20428 5.32278 5.36844 5.48371 5.55119 5.56367 5.62359 6.30446 6.38212 6.64832 7.06638 7.36347 8.15828 8.36301 9.30799 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010968 B = 0.003611 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.168242 B = 7753.201301 C = 8890.489608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.162 3.838 3 H 0.038 0.962 4 C -0.120 4.120 5 C 0.145 3.855 6 H 0.054 0.946 7 C -0.152 4.152 8 N -0.697 5.697 9 C 0.583 3.417 10 O -0.566 6.566 11 C -0.242 4.242 12 C -0.040 4.040 13 C -0.152 4.152 14 C -0.027 4.027 15 C -0.165 4.165 16 C 0.146 3.854 17 N -0.489 5.489 18 C 0.039 3.961 19 S 0.193 5.807 20 N -0.731 5.731 21 C -0.226 4.226 22 H 0.067 0.933 23 C -0.076 4.076 24 N -0.967 5.967 25 Si 0.959 3.041 26 H -0.269 1.269 27 H -0.299 1.299 28 H -0.290 1.290 29 H 0.076 0.924 30 H 0.029 0.971 31 H 0.044 0.956 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.082 0.918 37 H 0.406 0.594 38 H 0.156 0.844 39 H 0.168 0.832 40 H 0.188 0.812 41 H 0.205 0.795 42 H 0.371 0.629 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.356 17.368 17.646 25.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 H 0.056 0.944 4 C -0.158 4.158 5 C 0.041 3.959 6 H 0.072 0.928 7 C -0.210 4.210 8 N -0.348 5.348 9 C 0.369 3.631 10 O -0.447 6.447 11 C -0.361 4.361 12 C -0.072 4.072 13 C -0.163 4.163 14 C -0.054 4.054 15 C -0.187 4.187 16 C -0.025 4.025 17 N -0.201 5.201 18 C -0.204 4.204 19 S 0.458 5.542 20 N -0.371 5.371 21 C -0.358 4.358 22 H 0.085 0.915 23 C -0.268 4.268 24 N -0.619 5.619 25 Si 0.789 3.211 26 H -0.194 1.194 27 H -0.227 1.227 28 H -0.218 1.218 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.125 0.875 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.242 0.758 38 H 0.173 0.827 39 H 0.186 0.814 40 H 0.205 0.795 41 H 0.222 0.778 42 H 0.203 0.797 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.536 17.116 18.185 25.579 hybrid contribution 2.020 -0.443 -2.254 3.059 sum 7.556 16.674 15.930 24.267 Atomic orbital electron populations 1.22300 0.97520 1.01022 1.00729 1.20523 0.92832 0.95085 0.86152 0.94382 1.22110 0.92433 1.02694 0.98554 1.20981 0.96008 0.79912 0.98985 0.92785 1.22098 1.00542 1.00444 0.97912 1.45782 1.15378 1.12203 1.61428 1.17295 0.82492 0.85690 0.77605 1.90820 1.52610 1.56155 1.45086 1.23736 1.01258 0.98017 1.13113 1.20260 0.96911 0.93744 0.96329 1.19174 0.97648 0.94100 1.05344 1.21746 0.96268 0.93480 0.93899 1.22220 1.01074 0.95828 0.99554 1.23726 0.87187 1.00614 0.90973 1.67315 1.30973 1.02045 1.19718 1.23970 0.97391 0.96739 1.02347 1.83848 1.13784 0.94943 1.61650 1.42584 1.78223 1.10121 1.06180 1.19522 1.34059 0.93715 0.88520 0.91464 1.25403 1.03491 0.96834 1.01069 1.69800 1.53100 1.09996 1.28982 0.85269 0.76609 0.78301 0.80877 1.19368 1.22704 1.21763 0.90524 0.95181 0.93637 0.87532 0.89843 0.90570 0.94148 0.89910 0.75755 0.82674 0.81424 0.79515 0.77834 0.79688 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.19 9.49 71.98 0.68 -4.51 16 2 C 0.16 6.08 2.84 44.99 0.13 6.21 16 3 H 0.04 1.48 7.56 -2.39 -0.02 1.47 16 4 C -0.12 -3.45 4.29 30.59 0.13 -3.32 16 5 C 0.15 4.76 2.52 44.99 0.11 4.88 16 6 H 0.05 2.42 7.05 -2.39 -0.02 2.40 16 7 C -0.15 -4.03 9.48 71.98 0.68 -3.35 16 8 N -0.70 -21.60 4.44 -446.21 -1.98 -23.59 16 9 C 0.58 21.10 7.76 86.54 0.67 21.77 16 10 O -0.57 -25.50 16.38 -4.20 -0.07 -25.57 16 11 C -0.24 -7.31 6.31 23.53 0.15 -7.16 16 12 C -0.04 -1.10 9.79 21.74 0.21 -0.88 16 13 C -0.15 -3.55 5.88 -21.47 -0.13 -3.68 16 14 C -0.03 -0.40 10.16 22.71 0.23 -0.17 16 15 C -0.16 -1.69 10.01 22.00 0.22 -1.47 16 16 C 0.15 1.94 11.18 84.90 0.95 2.88 16 17 N -0.49 -10.81 10.39 -190.76 -1.98 -12.79 16 18 C 0.04 0.96 7.66 84.92 0.65 1.62 16 19 S 0.19 4.78 22.25 -56.49 -1.26 3.52 16 20 N -0.73 -36.78 4.49 -322.93 -1.45 -38.23 16 21 C -0.23 -12.90 9.93 84.03 0.83 -12.07 16 22 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 23 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 24 N -0.97 -61.41 13.06 21.65 0.28 -61.13 16 25 Si 0.96 48.60 29.55 68.60 2.03 50.63 16 26 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 27 H -0.30 -15.39 7.11 99.48 0.71 -14.69 16 28 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 37 H 0.41 10.11 7.65 -92.71 -0.71 9.40 16 38 H 0.16 4.23 7.96 -2.91 -0.02 4.20 16 39 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 40 H 0.19 0.30 8.06 -2.91 -0.02 0.27 16 41 H 0.21 0.98 8.06 -2.91 -0.02 0.96 16 42 H 0.37 20.25 7.80 -92.71 -0.72 19.53 16 43 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -80.42 378.16 1.18 -79.25 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: -0.39 Total: 31.23 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 6.00 Total: -3.32 kcal Atomic # 7 Polarization: -130.60 SS G_CDS: -5.13 Total: -135.73 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.07 Total: -25.57 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.03 Total: 50.63 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -1.26 Total: 3.52 kcal Total: -80.42 1.18 -79.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135852843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.798 kcal (2) G-P(sol) polarization free energy of solvation -80.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds