Wall clock time and date at job start Tue Mar 31 2020 18:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47519 * 2 1 4 4 C 1.53005 * 109.47109 * 239.99730 * 2 1 3 5 5 C 1.52996 * 109.47236 * 175.00165 * 4 2 1 6 6 H 1.08999 * 109.46970 * 305.00279 * 5 4 2 7 7 C 1.52999 * 109.46993 * 185.00017 * 5 4 2 8 8 N 1.46501 * 109.47329 * 64.99591 * 5 4 2 9 9 C 1.36927 * 120.00506 * 204.99788 * 8 5 4 10 10 H 1.08005 * 119.99675 * 0.02562 * 9 8 5 11 11 C 1.38817 * 120.00501 * 180.02562 * 9 8 5 12 12 N 1.31614 * 119.99522 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00245 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47063 * 59.99780 * 13 11 9 15 15 H 1.48498 * 109.47080 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46942 * 299.99871 * 13 11 9 17 17 N 1.46503 * 109.47275 * 120.00013 * 2 1 3 18 18 C 1.34774 * 119.99800 * 275.00053 * 17 2 1 19 19 O 1.21656 * 120.00055 * 359.97438 * 18 17 2 20 20 C 1.46988 * 120.00255 * 179.97438 * 18 17 2 21 21 C 1.33672 * 124.64301 * 179.97438 * 20 18 17 22 22 C 1.40316 * 115.51091 * 180.02562 * 21 20 18 23 23 C 1.41637 * 129.15475 * 179.97438 * 22 21 20 24 24 C 1.36526 * 118.85528 * 180.02562 * 23 22 21 25 25 C 1.38768 * 119.73113 * 0.02562 * 24 23 22 26 26 N 1.31288 * 121.06907 * 0.25419 * 25 24 23 27 27 C 1.33436 * 121.98259 * 359.47741 * 26 25 24 28 28 S 1.75469 * 124.63499 * 0.02562 * 20 18 17 29 29 H 1.08997 * 109.47711 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47031 * 300.00167 * 1 2 3 31 31 H 1.08998 * 109.47171 * 60.00077 * 1 2 3 32 32 H 1.08998 * 109.46813 * 295.00322 * 4 2 1 33 33 H 1.08998 * 109.46700 * 55.00150 * 4 2 1 34 34 H 1.08998 * 109.47021 * 60.00505 * 7 5 4 35 35 H 1.09010 * 109.46639 * 180.02562 * 7 5 4 36 36 H 1.08997 * 109.47069 * 299.99613 * 7 5 4 37 37 H 0.97001 * 119.99453 * 25.00387 * 8 5 4 38 38 H 0.97004 * 119.99888 * 179.97438 * 12 11 9 39 39 H 0.96992 * 120.00392 * 94.99752 * 17 2 1 40 40 H 1.08001 * 122.24318 * 0.05855 * 21 20 18 41 41 H 1.08003 * 120.56869 * 0.02956 * 23 22 21 42 42 H 1.08005 * 120.13411 * 180.02562 * 24 23 22 43 43 H 1.07993 * 119.46707 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0643 -1.2252 -2.6240 8 7 4.1536 -1.3342 -0.1824 9 6 5.3942 -0.9857 0.2806 10 1 5.9385 -0.1791 -0.1880 11 6 5.9524 -1.6690 1.3523 12 7 5.2893 -2.6523 1.9230 13 14 7.6446 -1.1931 1.9843 14 1 7.6255 0.2227 2.4322 15 1 8.0110 -2.0691 3.1259 16 1 8.6427 -1.3547 0.8966 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8581 1.1623 2.4116 20 6 2.6365 -0.7112 3.5574 21 6 2.7998 -0.1364 4.7532 22 6 3.2798 -0.9783 5.7679 23 6 3.5556 -0.6770 7.1241 24 6 4.0223 -1.6691 7.9377 25 6 4.2172 -2.9441 7.4259 26 7 3.9645 -3.2146 6.1663 27 6 3.5019 -2.2891 5.3237 28 16 3.0875 -2.4059 3.6164 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7515 -1.7715 -1.2055 33 1 1.6053 -0.2618 -2.1369 34 1 3.6263 -0.6888 -3.4657 35 1 5.1508 -1.1487 -2.6697 36 1 3.7721 -2.2743 -2.6699 37 1 3.6646 -2.0585 0.2387 38 1 5.6795 -3.1301 2.6717 39 1 2.2490 -1.6317 1.1527 40 1 2.5767 0.9060 4.9267 41 1 3.3993 0.3203 7.5079 42 1 4.2390 -1.4623 8.9754 43 1 4.5861 -3.7258 8.0734 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135852844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:01 Heat of formation + Delta-G solvation = 31.640370 kcal Electronic energy + Delta-G solvation = -27038.139884 eV Core-core repulsion = 23403.122529 eV Total energy + Delta-G solvation = -3635.017355 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -39.85893 -39.27753 -36.98968 -35.11957 -34.26953 -32.47136 -31.91769 -30.92286 -29.10574 -28.62669 -26.43049 -24.53967 -23.88838 -23.65464 -21.81846 -20.40504 -20.32129 -19.51962 -18.02655 -17.40866 -16.73281 -16.16646 -15.40818 -15.21686 -14.84807 -14.57319 -14.45432 -13.96544 -13.90882 -13.85380 -13.45901 -13.02742 -12.84918 -12.77344 -12.36687 -12.23757 -12.07145 -11.91595 -11.76344 -11.70388 -11.25339 -11.00858 -10.93682 -10.85830 -10.46941 -10.40795 -10.28631 -10.05454 -9.97995 -9.79846 -9.45157 -9.16089 -9.00993 -8.52696 -8.12051 -7.49613 -6.86934 -5.97897 -3.15561 0.70683 1.49314 1.93790 2.43998 2.56869 3.34884 3.40960 3.43038 3.61855 3.85046 4.15123 4.44223 4.86419 4.97838 5.01865 5.20381 5.29918 5.34573 5.38173 5.41837 5.49602 5.59469 5.67099 5.78962 5.88701 5.91874 5.96142 6.04597 6.13409 6.16058 6.26875 6.28868 6.34773 6.44051 6.49686 6.56244 6.71115 6.74144 6.93383 6.95273 7.04949 7.46979 8.05006 8.15634 8.19762 8.76875 9.26300 9.78067 10.12910 11.15704 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011645 B = 0.005481 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.799349 B = 5107.704612 C = 6643.428987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.150 3.850 3 H 0.086 0.914 4 C -0.135 4.135 5 C 0.166 3.834 6 H 0.051 0.949 7 C -0.163 4.163 8 N -0.714 5.714 9 C -0.197 4.197 10 H 0.073 0.927 11 C -0.023 4.023 12 N -0.897 5.897 13 Si 0.904 3.096 14 H -0.287 1.287 15 H -0.289 1.289 16 H -0.286 1.286 17 N -0.695 5.695 18 C 0.600 3.400 19 O -0.552 6.552 20 C -0.240 4.240 21 C -0.082 4.082 22 C -0.136 4.136 23 C -0.034 4.034 24 C -0.192 4.192 25 C 0.118 3.882 26 N -0.450 5.450 27 C 0.002 3.998 28 S 0.334 5.666 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.038 0.962 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.378 0.622 38 H 0.264 0.736 39 H 0.401 0.599 40 H 0.140 0.860 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.746 0.513 2.845 8.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.045 3.955 3 H 0.104 0.896 4 C -0.174 4.174 5 C 0.056 3.944 6 H 0.070 0.930 7 C -0.223 4.223 8 N -0.356 5.356 9 C -0.328 4.328 10 H 0.090 0.910 11 C -0.219 4.219 12 N -0.544 5.544 13 Si 0.735 3.265 14 H -0.213 1.213 15 H -0.214 1.214 16 H -0.212 1.212 17 N -0.347 5.347 18 C 0.387 3.613 19 O -0.433 6.433 20 C -0.363 4.363 21 C -0.116 4.116 22 C -0.149 4.149 23 C -0.062 4.062 24 C -0.215 4.215 25 C -0.058 4.058 26 N -0.160 5.160 27 C -0.243 4.243 28 S 0.608 5.392 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.213 0.787 38 H 0.075 0.925 39 H 0.238 0.762 40 H 0.158 0.842 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.662 -0.619 1.123 7.769 hybrid contribution 1.194 1.584 1.955 2.785 sum -6.469 0.966 3.079 7.229 Atomic orbital electron populations 1.22212 0.96004 1.01803 1.02137 1.20855 0.92751 0.97760 0.84125 0.89611 1.22231 0.97594 1.00786 0.96742 1.20366 0.89901 0.96017 0.88093 0.93048 1.22392 1.01583 1.00455 0.97852 1.42616 1.18567 1.39748 1.34620 1.19403 0.92525 1.11728 1.09185 0.90951 1.24566 0.98926 0.99407 0.99008 1.69207 1.36571 1.23595 1.25070 0.86273 0.84116 0.77830 0.78314 1.21342 1.21431 1.21236 1.45872 1.66067 1.14070 1.08736 1.16878 0.76749 0.85764 0.81942 1.90718 1.52284 1.15173 1.85092 1.23845 1.12462 1.01790 0.98177 1.19632 1.00975 1.00453 0.90571 1.18829 1.06344 0.94367 0.95354 1.21097 0.94590 0.99291 0.91233 1.21474 1.04413 0.94736 1.00897 1.22638 0.96346 0.95637 0.91221 1.67197 1.10877 1.34440 1.03491 1.24526 1.05868 0.93176 1.00700 1.85198 1.56497 1.02281 0.95258 0.92692 0.92237 0.91942 0.91601 0.90426 0.94322 0.92772 0.93461 0.78671 0.92540 0.76178 0.84204 0.85241 0.85134 0.82798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.48 37.15 0.35 -1.78 16 2 C 0.15 2.34 2.57 -67.93 -0.17 2.17 16 3 H 0.09 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.13 -1.91 4.43 -26.73 -0.12 -2.02 16 5 C 0.17 2.88 2.89 -67.93 -0.20 2.69 16 6 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 7 C -0.16 -2.60 9.49 37.16 0.35 -2.25 16 8 N -0.71 -15.14 3.84 -53.43 -0.21 -15.35 16 9 C -0.20 -4.84 9.93 -15.06 -0.15 -4.99 16 10 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 11 C -0.02 -0.60 5.50 -17.43 -0.10 -0.69 16 12 N -0.90 -22.55 10.12 55.49 0.56 -21.99 16 13 Si 0.90 21.65 29.55 -169.99 -5.02 16.63 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 N -0.70 -12.56 3.79 -55.02 -0.21 -12.77 16 18 C 0.60 12.35 7.76 -12.72 -0.10 12.25 16 19 O -0.55 -12.44 16.38 5.23 0.09 -12.36 16 20 C -0.24 -4.87 6.31 -37.64 -0.24 -5.10 16 21 C -0.08 -1.58 9.80 -40.40 -0.40 -1.98 16 22 C -0.14 -2.52 5.88 -107.09 -0.63 -3.15 16 23 C -0.03 -0.51 10.16 -38.90 -0.40 -0.91 16 24 C -0.19 -2.57 10.01 -40.00 -0.40 -2.97 16 25 C 0.12 1.76 11.18 -17.59 -0.20 1.56 16 26 N -0.45 -8.52 10.39 -11.65 -0.12 -8.64 16 27 C 0.00 0.04 7.66 -16.13 -0.12 -0.09 16 28 S 0.33 6.63 19.31 -107.50 -2.08 4.56 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.38 8.20 5.70 -40.82 -0.23 7.96 16 38 H 0.26 6.85 8.23 -40.82 -0.34 6.51 16 39 H 0.40 7.27 5.55 -40.82 -0.23 7.04 16 40 H 0.14 2.54 7.96 -52.49 -0.42 2.12 16 41 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 42 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 43 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 368.00 15.07 5.55 5.55 Total: -1.00 -28.77 368.00 -9.83 -38.60 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -5.88 Total: 13.03 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -2.51 Total: -7.25 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: 0.03 Total: -58.75 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 6.63 SS G_CDS: -2.08 Total: 4.56 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.77 -9.83 -38.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135852844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.243 kcal (2) G-P(sol) polarization free energy of solvation -28.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds