Wall clock time and date at job start Tue Mar 31 2020 18:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47519 * 2 1 4 4 C 1.53005 * 109.47109 * 239.99730 * 2 1 3 5 5 C 1.52996 * 109.47236 * 175.00165 * 4 2 1 6 6 H 1.08999 * 109.46970 * 305.00279 * 5 4 2 7 7 C 1.52999 * 109.46993 * 185.00017 * 5 4 2 8 8 N 1.46501 * 109.47329 * 64.99591 * 5 4 2 9 9 C 1.36927 * 120.00506 * 204.99788 * 8 5 4 10 10 H 1.08005 * 119.99675 * 0.02562 * 9 8 5 11 11 C 1.38817 * 120.00501 * 180.02562 * 9 8 5 12 12 N 1.31614 * 119.99522 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00245 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47063 * 59.99780 * 13 11 9 15 15 H 1.48498 * 109.47080 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46942 * 299.99871 * 13 11 9 17 17 N 1.46503 * 109.47275 * 120.00013 * 2 1 3 18 18 C 1.34774 * 119.99800 * 275.00053 * 17 2 1 19 19 O 1.21656 * 120.00055 * 359.97438 * 18 17 2 20 20 C 1.46988 * 120.00255 * 179.97438 * 18 17 2 21 21 C 1.33672 * 124.64301 * 179.97438 * 20 18 17 22 22 C 1.40316 * 115.51091 * 180.02562 * 21 20 18 23 23 C 1.41637 * 129.15475 * 179.97438 * 22 21 20 24 24 C 1.36526 * 118.85528 * 180.02562 * 23 22 21 25 25 C 1.38768 * 119.73113 * 0.02562 * 24 23 22 26 26 N 1.31288 * 121.06907 * 0.25419 * 25 24 23 27 27 C 1.33436 * 121.98259 * 359.47741 * 26 25 24 28 28 S 1.75469 * 124.63499 * 0.02562 * 20 18 17 29 29 H 1.08997 * 109.47711 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47031 * 300.00167 * 1 2 3 31 31 H 1.08998 * 109.47171 * 60.00077 * 1 2 3 32 32 H 1.08998 * 109.46813 * 295.00322 * 4 2 1 33 33 H 1.08998 * 109.46700 * 55.00150 * 4 2 1 34 34 H 1.08998 * 109.47021 * 60.00505 * 7 5 4 35 35 H 1.09010 * 109.46639 * 180.02562 * 7 5 4 36 36 H 1.08997 * 109.47069 * 299.99613 * 7 5 4 37 37 H 0.97001 * 119.99453 * 25.00387 * 8 5 4 38 38 H 0.97004 * 119.99888 * 179.97438 * 12 11 9 39 39 H 0.96992 * 120.00392 * 94.99752 * 17 2 1 40 40 H 1.08001 * 122.24318 * 0.05855 * 21 20 18 41 41 H 1.08003 * 120.56869 * 0.02956 * 23 22 21 42 42 H 1.08005 * 120.13411 * 180.02562 * 24 23 22 43 43 H 1.07993 * 119.46707 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0643 -1.2252 -2.6240 8 7 4.1536 -1.3342 -0.1824 9 6 5.3942 -0.9857 0.2806 10 1 5.9385 -0.1791 -0.1880 11 6 5.9524 -1.6690 1.3523 12 7 5.2893 -2.6523 1.9230 13 14 7.6446 -1.1931 1.9843 14 1 7.6255 0.2227 2.4322 15 1 8.0110 -2.0691 3.1259 16 1 8.6427 -1.3547 0.8966 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8581 1.1623 2.4116 20 6 2.6365 -0.7112 3.5574 21 6 2.7998 -0.1364 4.7532 22 6 3.2798 -0.9783 5.7679 23 6 3.5556 -0.6770 7.1241 24 6 4.0223 -1.6691 7.9377 25 6 4.2172 -2.9441 7.4259 26 7 3.9645 -3.2146 6.1663 27 6 3.5019 -2.2891 5.3237 28 16 3.0875 -2.4059 3.6164 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7515 -1.7715 -1.2055 33 1 1.6053 -0.2618 -2.1369 34 1 3.6263 -0.6888 -3.4657 35 1 5.1508 -1.1487 -2.6697 36 1 3.7721 -2.2743 -2.6699 37 1 3.6646 -2.0585 0.2387 38 1 5.6795 -3.1301 2.6717 39 1 2.2490 -1.6317 1.1527 40 1 2.5767 0.9060 4.9267 41 1 3.3993 0.3203 7.5079 42 1 4.2390 -1.4623 8.9754 43 1 4.5861 -3.7258 8.0734 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135852844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:59 Heat of formation + Delta-G solvation = 14.689632 kcal Electronic energy + Delta-G solvation = -27038.874924 eV Core-core repulsion = 23403.122529 eV Total energy + Delta-G solvation = -3635.752394 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.25460 -40.74233 -38.43823 -36.57582 -35.80533 -34.09617 -33.19069 -32.36294 -30.58687 -30.07502 -27.61855 -25.94823 -25.61246 -24.99545 -23.16323 -21.80516 -21.68643 -20.99315 -19.45057 -19.15460 -18.08366 -17.59141 -16.79207 -16.71740 -16.33807 -16.07723 -15.83953 -15.59374 -15.47248 -15.27304 -14.99623 -14.37005 -14.23705 -13.97661 -13.78831 -13.61596 -13.34381 -13.30851 -13.04108 -12.92207 -12.81177 -12.64990 -12.57058 -12.30061 -12.23953 -11.83391 -11.74548 -11.58413 -11.44207 -11.21749 -11.06056 -10.87472 -10.34081 -10.01724 -9.55440 -9.06598 -8.50250 -7.81173 -5.03330 -0.66457 0.21866 0.46329 1.00163 1.07668 1.40322 1.44443 1.45911 2.12444 2.37295 2.55931 2.82602 3.46986 3.58025 3.73327 3.81208 3.89444 4.00493 4.08233 4.14252 4.17124 4.35719 4.49259 4.55312 4.62935 4.66716 4.82495 4.85663 4.87097 4.89154 4.95954 5.07068 5.12779 5.14640 5.18693 5.32633 5.35774 5.40415 5.56792 5.61204 5.68398 5.74895 6.31226 6.54212 6.88665 7.21286 7.41114 8.11883 8.38474 9.28060 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011645 B = 0.005481 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.799349 B = 5107.704612 C = 6643.428987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.143 3.857 3 H 0.063 0.937 4 C -0.121 4.121 5 C 0.159 3.841 6 H 0.033 0.967 7 C -0.153 4.153 8 N -0.719 5.719 9 C -0.216 4.216 10 H 0.058 0.942 11 C -0.050 4.050 12 N -0.907 5.907 13 Si 0.933 3.067 14 H -0.299 1.299 15 H -0.301 1.301 16 H -0.283 1.283 17 N -0.687 5.687 18 C 0.594 3.406 19 O -0.581 6.581 20 C -0.257 4.257 21 C -0.076 4.076 22 C -0.156 4.156 23 C -0.035 4.035 24 C -0.175 4.175 25 C 0.127 3.873 26 N -0.491 5.491 27 C -0.010 4.010 28 S 0.307 5.693 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.029 0.971 36 H 0.048 0.952 37 H 0.374 0.626 38 H 0.250 0.750 39 H 0.401 0.599 40 H 0.149 0.851 41 H 0.165 0.835 42 H 0.183 0.817 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.931 0.502 4.596 10.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 H 0.081 0.919 4 C -0.160 4.160 5 C 0.051 3.949 6 H 0.051 0.949 7 C -0.212 4.212 8 N -0.362 5.362 9 C -0.348 4.348 10 H 0.076 0.924 11 C -0.245 4.245 12 N -0.556 5.556 13 Si 0.766 3.234 14 H -0.227 1.227 15 H -0.227 1.227 16 H -0.210 1.210 17 N -0.337 5.337 18 C 0.380 3.620 19 O -0.464 6.464 20 C -0.379 4.379 21 C -0.112 4.112 22 C -0.169 4.169 23 C -0.063 4.063 24 C -0.198 4.198 25 C -0.048 4.048 26 N -0.202 5.202 27 C -0.253 4.253 28 S 0.580 5.420 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.133 0.867 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.208 0.792 38 H 0.060 0.940 39 H 0.238 0.762 40 H 0.167 0.833 41 H 0.182 0.818 42 H 0.200 0.800 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -8.873 -0.636 2.870 9.347 hybrid contribution 1.476 1.598 1.841 2.850 sum -7.397 0.961 4.712 8.822 Atomic orbital electron populations 1.22125 0.93487 1.02866 1.02643 1.21080 0.94653 0.96488 0.83823 0.91919 1.22167 0.94931 1.01598 0.97270 1.20546 0.92108 0.94612 0.87611 0.94927 1.22252 1.00134 1.00830 0.98024 1.42584 1.17689 1.40081 1.35824 1.19289 0.94094 1.11750 1.09661 0.92362 1.24875 0.99873 1.00001 0.99761 1.69353 1.36775 1.24255 1.25197 0.85826 0.83649 0.76396 0.77542 1.22681 1.22731 1.20997 1.45955 1.64949 1.13974 1.08835 1.17064 0.76576 0.85562 0.82758 1.90683 1.53828 1.16161 1.85688 1.23986 1.13281 1.01958 0.98649 1.19928 0.99652 1.00980 0.90606 1.19136 1.06998 0.93637 0.97095 1.21617 0.93465 1.01604 0.89602 1.22054 1.01540 0.93193 1.02983 1.23563 0.93392 0.97717 0.90092 1.67246 1.12858 1.34863 1.05190 1.24582 1.05972 0.94083 1.00704 1.85103 1.57950 1.02199 0.96708 0.91302 0.94121 0.89028 0.90534 0.86736 0.91101 0.95167 0.93320 0.79157 0.93976 0.76180 0.83346 0.81798 0.79957 0.78712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.48 71.98 0.68 -3.07 16 2 C 0.14 4.43 2.57 44.99 0.12 4.55 16 3 H 0.06 2.24 7.58 -2.38 -0.02 2.23 16 4 C -0.12 -3.23 4.43 30.59 0.14 -3.10 16 5 C 0.16 5.56 2.89 44.99 0.13 5.69 16 6 H 0.03 1.25 8.08 -2.39 -0.02 1.23 16 7 C -0.15 -4.75 9.49 71.98 0.68 -4.07 16 8 N -0.72 -31.50 3.84 -322.94 -1.24 -32.74 16 9 C -0.22 -11.06 9.93 84.04 0.83 -10.23 16 10 H 0.06 3.06 7.83 -2.91 -0.02 3.04 16 11 C -0.05 -2.66 5.50 84.86 0.47 -2.20 16 12 N -0.91 -47.51 10.12 21.65 0.22 -47.29 16 13 Si 0.93 45.99 29.55 68.60 2.03 48.02 16 14 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 15 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 16 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 17 N -0.69 -25.41 3.79 -446.21 -1.69 -27.10 16 18 C 0.59 25.26 7.76 86.54 0.67 25.93 16 19 O -0.58 -26.97 16.38 -4.21 -0.07 -27.04 16 20 C -0.26 -10.74 6.31 23.53 0.15 -10.59 16 21 C -0.08 -2.97 9.80 21.74 0.21 -2.75 16 22 C -0.16 -5.62 5.88 -21.47 -0.13 -5.74 16 23 C -0.04 -0.93 10.16 22.71 0.23 -0.70 16 24 C -0.18 -3.78 10.01 22.00 0.22 -3.56 16 25 C 0.13 3.30 11.18 84.90 0.95 4.25 16 26 N -0.49 -17.87 10.39 -190.76 -1.98 -19.85 16 27 C -0.01 -0.41 7.66 84.92 0.65 0.24 16 28 S 0.31 12.62 19.31 -56.49 -1.09 11.53 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 35 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.37 16.73 5.70 -92.71 -0.53 16.20 16 38 H 0.25 13.55 8.23 -92.71 -0.76 12.79 16 39 H 0.40 14.98 5.55 -92.71 -0.51 14.47 16 40 H 0.15 5.37 7.96 -2.91 -0.02 5.34 16 41 H 0.16 3.17 8.06 -2.91 -0.02 3.14 16 42 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 43 H 0.20 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -67.30 368.00 2.18 -65.12 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: 0.01 Total: 34.67 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 6.01 Total: -5.33 kcal Atomic # 7 Polarization: -122.28 SS G_CDS: -4.70 Total: -126.98 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.07 Total: -27.04 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Atomic # 16 Polarization: 12.62 SS G_CDS: -1.09 Total: 11.53 kcal Total: -67.30 2.18 -65.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135852844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.810 kcal (2) G-P(sol) polarization free energy of solvation -67.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds