Wall clock time and date at job start Tue Mar 31 2020 18:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47326 * 2 1 4 4 C 1.52994 * 109.47238 * 239.99674 * 2 1 3 5 5 C 1.53003 * 109.47277 * 175.00171 * 4 2 1 6 6 H 1.09002 * 109.46771 * 54.99804 * 5 4 2 7 7 C 1.52999 * 109.47172 * 174.99745 * 5 4 2 8 8 N 1.46498 * 109.46993 * 295.00114 * 5 4 2 9 9 C 1.34779 * 119.99967 * 154.99794 * 8 5 4 10 10 O 1.21587 * 119.99579 * 0.02562 * 9 8 5 11 11 C 1.47591 * 120.00123 * 179.97438 * 9 8 5 12 12 C 1.40199 * 120.12277 * 0.02562 * 11 9 8 13 13 C 1.35744 * 120.61339 * 180.23018 * 12 11 9 14 14 C 1.41249 * 120.63611 * 359.49063 * 13 12 11 15 15 N 1.34418 * 129.48447 * 180.23018 * 14 13 12 16 16 C 1.28057 * 117.91527 * 180.24776 * 15 14 13 17 17 S 1.70646 * 111.51898 * 0.02562 * 16 15 14 18 18 C 1.40153 * 118.74076 * 0.49535 * 14 13 12 19 19 C 1.38913 * 120.40919 * 359.76287 * 18 14 13 20 20 N 1.46505 * 109.46823 * 119.99780 * 2 1 3 21 21 C 1.36936 * 120.00041 * 274.99885 * 20 2 1 22 22 H 1.08000 * 119.99844 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00033 * 180.02562 * 21 20 2 24 24 N 1.31619 * 120.00093 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99705 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47258 * 60.00275 * 25 23 21 27 27 H 1.48501 * 109.46936 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47575 * 299.99781 * 25 23 21 29 29 H 1.09001 * 109.47026 * 300.00495 * 1 2 3 30 30 H 1.09000 * 109.46658 * 60.00164 * 1 2 3 31 31 H 1.08997 * 109.46931 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47153 * 54.99829 * 4 2 1 33 33 H 1.09005 * 109.47194 * 294.99797 * 4 2 1 34 34 H 1.08996 * 109.47278 * 300.00119 * 7 5 4 35 35 H 1.09002 * 109.47225 * 60.00337 * 7 5 4 36 36 H 1.08998 * 109.47070 * 180.02562 * 7 5 4 37 37 H 0.96996 * 120.00110 * 334.99657 * 8 5 4 38 38 H 1.08002 * 119.69090 * 359.94460 * 12 11 9 39 39 H 1.07998 * 119.68453 * 179.74184 * 13 12 11 40 40 H 1.07995 * 124.23773 * 180.02562 * 16 15 14 41 41 H 1.08004 * 120.07622 * 179.97438 * 19 18 14 42 42 H 0.97003 * 120.00026 * 95.00260 * 20 2 1 43 43 H 0.96998 * 119.99900 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6134 -1.3136 6 1 3.9954 -0.9923 -0.3866 7 6 4.0852 -1.4385 -2.4923 8 7 3.9480 0.7893 -1.4924 9 6 5.1613 1.2134 -1.0866 10 8 5.9379 0.4318 -0.5726 11 6 5.5475 2.6264 -1.2672 12 6 4.6542 3.5298 -1.8601 13 6 5.0008 4.8304 -2.0353 14 6 6.2640 5.3017 -1.6141 15 7 6.7852 6.5381 -1.6943 16 6 7.9692 6.7201 -1.2417 17 16 8.6293 5.2760 -0.6166 18 6 7.1569 4.3985 -1.0214 19 6 6.7996 3.0673 -0.8491 20 7 2.0183 -0.6906 1.1963 21 6 2.1491 -0.0074 2.3758 22 1 1.8919 1.0404 2.4243 23 6 2.6122 -0.6616 3.5091 24 7 2.9262 -1.9385 3.4498 25 14 2.7913 0.2706 5.1180 26 1 1.4690 0.8074 5.5288 27 1 3.3012 -0.6475 6.1679 28 1 3.7465 1.3930 4.9362 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -0.2618 -2.1369 33 1 1.7517 -1.7716 -1.2054 34 1 3.8001 -2.4821 -2.3592 35 1 3.6547 -1.0596 -3.4192 36 1 5.1716 -1.3620 -2.5379 37 1 3.3286 1.4127 -1.9028 38 1 3.6829 3.1865 -2.1846 39 1 4.3025 5.5124 -2.4975 40 1 8.4853 7.6687 -1.2541 41 1 7.4920 2.3758 -0.3920 42 1 2.2490 -1.6318 1.1527 43 1 3.2501 -2.3955 4.2417 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136079769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:16 Heat of formation + Delta-G solvation = 28.385805 kcal Electronic energy + Delta-G solvation = -25920.805442 eV Core-core repulsion = 22285.646958 eV Total energy + Delta-G solvation = -3635.158484 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.79064 -39.53180 -37.17684 -36.45365 -34.50293 -32.25390 -31.44502 -31.18084 -29.63513 -28.57169 -26.33404 -25.69321 -23.71794 -23.47486 -22.48583 -21.21910 -20.33626 -19.72022 -18.97228 -17.58196 -17.07283 -16.62842 -16.15684 -15.60015 -15.15635 -14.80209 -14.62812 -14.29349 -14.12736 -13.98044 -13.81762 -13.63068 -13.09372 -13.04458 -12.71140 -12.66252 -12.18851 -12.03913 -11.89135 -11.72741 -11.59990 -11.14958 -11.03033 -10.79597 -10.60442 -10.46214 -10.42091 -10.22871 -9.99353 -9.89593 -9.73006 -9.58918 -9.03563 -8.85017 -8.73570 -8.38291 -6.89701 -5.70330 -2.98250 -0.08602 0.89866 0.94113 1.41200 1.80786 2.97944 3.32080 3.47773 3.52607 3.52943 3.66143 3.72053 4.33477 4.64384 4.66990 4.69878 4.89525 4.94958 5.10935 5.24244 5.40939 5.48202 5.53684 5.63304 5.68981 5.79768 5.86644 5.89463 5.94254 6.00461 6.02260 6.13471 6.28309 6.31051 6.36220 6.44728 6.57419 6.70279 6.80006 6.92328 7.08472 7.23480 7.72706 7.74603 8.44812 8.48236 9.59472 10.16558 10.50700 11.52365 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010694 B = 0.003481 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.549953 B = 8041.725399 C = 9313.673356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.143 3.857 6 H 0.108 0.892 7 C -0.161 4.161 8 N -0.708 5.708 9 C 0.559 3.441 10 O -0.525 6.525 11 C -0.107 4.107 12 C -0.076 4.076 13 C -0.069 4.069 14 C 0.095 3.905 15 N -0.468 5.468 16 C 0.065 3.935 17 S 0.113 5.887 18 C -0.191 4.191 19 C -0.007 4.007 20 N -0.720 5.720 21 C -0.235 4.235 22 H 0.066 0.934 23 C -0.010 4.010 24 N -0.932 5.932 25 Si 0.902 3.098 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.287 1.287 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.394 0.606 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.205 0.795 41 H 0.147 0.853 42 H 0.383 0.617 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.748 13.478 -15.969 21.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.040 3.960 6 H 0.126 0.874 7 C -0.219 4.219 8 N -0.359 5.359 9 C 0.345 3.655 10 O -0.402 6.402 11 C -0.114 4.114 12 C -0.097 4.097 13 C -0.090 4.090 14 C -0.027 4.027 15 N -0.180 5.180 16 C -0.239 4.239 17 S 0.367 5.633 18 C -0.309 4.309 19 C -0.030 4.030 20 N -0.362 5.362 21 C -0.367 4.367 22 H 0.084 0.916 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.733 3.267 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.214 1.214 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.228 0.772 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.222 0.778 41 H 0.164 0.836 42 H 0.217 0.783 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.034 13.301 -15.218 21.750 hybrid contribution -1.003 0.425 0.562 1.226 sum 7.031 13.726 -14.656 21.275 Atomic orbital electron populations 1.22462 0.99534 1.00822 0.99763 1.20226 0.91576 0.95527 0.86564 0.93669 1.22180 0.93602 1.02362 0.98854 1.21085 0.95219 0.79681 1.00053 0.87432 1.22185 1.01563 1.00237 0.97953 1.45864 1.16012 1.11900 1.62139 1.17897 0.82439 0.86696 0.78462 1.90822 1.51124 1.55716 1.42524 1.20016 0.94824 0.94500 1.02038 1.20842 0.99239 0.92517 0.97152 1.20252 0.93342 0.95615 0.99788 1.19389 0.96238 0.86810 1.00241 1.66202 1.11392 1.21287 1.19150 1.28205 0.93831 1.03499 0.98346 1.84121 1.15537 1.02522 1.61110 1.23753 0.98772 0.99726 1.08689 1.20458 0.95714 0.91967 0.94868 1.42384 1.77992 1.10546 1.05246 1.19107 1.36535 0.93644 0.87370 0.91587 1.24677 1.02163 0.95914 0.97896 1.69632 1.50844 1.08624 1.28884 0.86351 0.77666 0.78734 0.83944 1.21402 1.21699 1.21405 0.92913 0.94719 0.93517 0.92009 0.90479 0.91615 0.93087 0.92478 0.77167 0.84245 0.84160 0.77831 0.83561 0.78331 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.49 37.16 0.35 -2.48 16 2 C 0.17 3.17 2.84 -67.93 -0.19 2.98 16 3 H 0.05 0.85 7.56 -51.93 -0.39 0.46 16 4 C -0.13 -1.93 4.29 -26.73 -0.11 -2.04 16 5 C 0.14 2.25 2.52 -67.93 -0.17 2.08 16 6 H 0.11 2.24 7.05 -51.93 -0.37 1.88 16 7 C -0.16 -2.14 9.48 37.16 0.35 -1.79 16 8 N -0.71 -10.05 4.40 -54.83 -0.24 -10.29 16 9 C 0.56 9.21 7.73 -12.44 -0.10 9.11 16 10 O -0.53 -10.87 16.00 5.29 0.08 -10.79 16 11 C -0.11 -1.46 5.87 -105.00 -0.62 -2.08 16 12 C -0.08 -0.82 9.44 -39.74 -0.38 -1.19 16 13 C -0.07 -0.74 10.03 -39.33 -0.39 -1.13 16 14 C 0.09 1.17 7.00 -84.87 -0.59 0.57 16 15 N -0.47 -5.42 10.56 -12.83 -0.14 -5.56 16 16 C 0.07 0.56 12.11 51.19 0.62 1.18 16 17 S 0.11 1.06 23.17 -107.50 -2.49 -1.43 16 18 C -0.19 -2.38 6.54 -38.61 -0.25 -2.63 16 19 C -0.01 -0.10 9.62 -38.98 -0.37 -0.47 16 20 N -0.72 -17.50 4.49 -53.42 -0.24 -17.74 16 21 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 22 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 24 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 25 Si 0.90 23.01 29.55 -169.99 -5.02 17.99 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.39 4.29 6.62 -40.82 -0.27 4.02 16 38 H 0.14 1.09 6.38 -52.49 -0.33 0.75 16 39 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.21 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.15 2.05 7.64 -52.48 -0.40 1.65 16 42 H 0.38 9.99 7.80 -40.82 -0.32 9.68 16 43 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 375.37 15.07 5.66 5.66 Total: -1.00 -34.70 375.37 -9.62 -44.33 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -5.86 Total: 10.54 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -2.10 Total: -4.98 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: 0.11 Total: -61.32 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.49 Total: -1.43 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.70 -9.62 -44.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136079769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.711 kcal (2) G-P(sol) polarization free energy of solvation -34.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds