Wall clock time and date at job start Tue Mar 31 2020 18:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47326 * 2 1 4 4 C 1.52994 * 109.47238 * 239.99674 * 2 1 3 5 5 C 1.53003 * 109.47277 * 175.00171 * 4 2 1 6 6 H 1.09002 * 109.46771 * 54.99804 * 5 4 2 7 7 C 1.52999 * 109.47172 * 174.99745 * 5 4 2 8 8 N 1.46498 * 109.46993 * 295.00114 * 5 4 2 9 9 C 1.34779 * 119.99967 * 154.99794 * 8 5 4 10 10 O 1.21587 * 119.99579 * 0.02562 * 9 8 5 11 11 C 1.47591 * 120.00123 * 179.97438 * 9 8 5 12 12 C 1.40199 * 120.12277 * 0.02562 * 11 9 8 13 13 C 1.35744 * 120.61339 * 180.23018 * 12 11 9 14 14 C 1.41249 * 120.63611 * 359.49063 * 13 12 11 15 15 N 1.34418 * 129.48447 * 180.23018 * 14 13 12 16 16 C 1.28057 * 117.91527 * 180.24776 * 15 14 13 17 17 S 1.70646 * 111.51898 * 0.02562 * 16 15 14 18 18 C 1.40153 * 118.74076 * 0.49535 * 14 13 12 19 19 C 1.38913 * 120.40919 * 359.76287 * 18 14 13 20 20 N 1.46505 * 109.46823 * 119.99780 * 2 1 3 21 21 C 1.36936 * 120.00041 * 274.99885 * 20 2 1 22 22 H 1.08000 * 119.99844 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00033 * 180.02562 * 21 20 2 24 24 N 1.31619 * 120.00093 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99705 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47258 * 60.00275 * 25 23 21 27 27 H 1.48501 * 109.46936 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47575 * 299.99781 * 25 23 21 29 29 H 1.09001 * 109.47026 * 300.00495 * 1 2 3 30 30 H 1.09000 * 109.46658 * 60.00164 * 1 2 3 31 31 H 1.08997 * 109.46931 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47153 * 54.99829 * 4 2 1 33 33 H 1.09005 * 109.47194 * 294.99797 * 4 2 1 34 34 H 1.08996 * 109.47278 * 300.00119 * 7 5 4 35 35 H 1.09002 * 109.47225 * 60.00337 * 7 5 4 36 36 H 1.08998 * 109.47070 * 180.02562 * 7 5 4 37 37 H 0.96996 * 120.00110 * 334.99657 * 8 5 4 38 38 H 1.08002 * 119.69090 * 359.94460 * 12 11 9 39 39 H 1.07998 * 119.68453 * 179.74184 * 13 12 11 40 40 H 1.07995 * 124.23773 * 180.02562 * 16 15 14 41 41 H 1.08004 * 120.07622 * 179.97438 * 19 18 14 42 42 H 0.97003 * 120.00026 * 95.00260 * 20 2 1 43 43 H 0.96998 * 119.99900 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6134 -1.3136 6 1 3.9954 -0.9923 -0.3866 7 6 4.0852 -1.4385 -2.4923 8 7 3.9480 0.7893 -1.4924 9 6 5.1613 1.2134 -1.0866 10 8 5.9379 0.4318 -0.5726 11 6 5.5475 2.6264 -1.2672 12 6 4.6542 3.5298 -1.8601 13 6 5.0008 4.8304 -2.0353 14 6 6.2640 5.3017 -1.6141 15 7 6.7852 6.5381 -1.6943 16 6 7.9692 6.7201 -1.2417 17 16 8.6293 5.2760 -0.6166 18 6 7.1569 4.3985 -1.0214 19 6 6.7996 3.0673 -0.8491 20 7 2.0183 -0.6906 1.1963 21 6 2.1491 -0.0074 2.3758 22 1 1.8919 1.0404 2.4243 23 6 2.6122 -0.6616 3.5091 24 7 2.9262 -1.9385 3.4498 25 14 2.7913 0.2706 5.1180 26 1 1.4690 0.8074 5.5288 27 1 3.3012 -0.6475 6.1679 28 1 3.7465 1.3930 4.9362 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -0.2618 -2.1369 33 1 1.7517 -1.7716 -1.2054 34 1 3.8001 -2.4821 -2.3592 35 1 3.6547 -1.0596 -3.4192 36 1 5.1716 -1.3620 -2.5379 37 1 3.3286 1.4127 -1.9028 38 1 3.6829 3.1865 -2.1846 39 1 4.3025 5.5124 -2.4975 40 1 8.4853 7.6687 -1.2541 41 1 7.4920 2.3758 -0.3920 42 1 2.2490 -1.6318 1.1527 43 1 3.2501 -2.3955 4.2417 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136079769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:15 Heat of formation + Delta-G solvation = 4.578936 kcal Electronic energy + Delta-G solvation = -25921.837785 eV Core-core repulsion = 22285.646958 eV Total energy + Delta-G solvation = -3636.190827 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.74090 -40.68394 -38.44902 -37.57562 -36.09765 -34.05249 -32.58011 -32.25182 -30.74110 -30.30432 -27.57994 -26.57031 -25.65567 -24.57030 -23.39283 -22.38727 -21.56179 -21.17703 -19.91850 -19.25343 -18.46037 -17.62798 -17.11255 -16.81313 -16.52969 -16.15456 -15.73220 -15.66739 -15.58563 -15.18776 -15.06373 -14.66943 -14.49104 -14.28618 -14.02465 -13.62109 -13.53517 -13.35073 -13.18627 -12.92274 -12.88560 -12.77308 -12.65049 -12.25789 -12.21230 -11.99596 -11.80083 -11.54568 -11.40324 -11.30138 -11.07167 -10.89403 -10.77974 -10.12143 -9.81839 -9.23452 -8.93386 -7.91451 -5.16248 -0.96075 0.00651 0.14407 0.63809 0.90282 1.41650 1.44821 1.49850 1.92302 2.16588 2.56268 2.67943 2.94125 3.43052 3.47252 3.61952 3.84298 3.94756 4.03558 4.06411 4.09373 4.16169 4.39587 4.43201 4.56799 4.67809 4.70821 4.81873 4.85225 4.91137 4.96398 4.99337 5.06890 5.09948 5.13353 5.25719 5.37121 5.43024 5.46136 5.52143 5.63904 5.67359 6.32095 6.43932 6.57481 7.26064 7.37858 8.19055 8.37951 9.32258 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010694 B = 0.003481 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.549953 B = 8041.725399 C = 9313.673356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.162 3.838 3 H 0.044 0.956 4 C -0.118 4.118 5 C 0.146 3.854 6 H 0.048 0.952 7 C -0.151 4.151 8 N -0.693 5.693 9 C 0.554 3.446 10 O -0.583 6.583 11 C -0.127 4.127 12 C -0.065 4.065 13 C -0.069 4.069 14 C 0.087 3.913 15 N -0.494 5.494 16 C 0.085 3.915 17 S 0.133 5.867 18 C -0.218 4.218 19 C -0.021 4.021 20 N -0.732 5.732 21 C -0.226 4.226 22 H 0.069 0.931 23 C -0.077 4.077 24 N -0.969 5.969 25 Si 0.959 3.041 26 H -0.275 1.275 27 H -0.297 1.297 28 H -0.288 1.288 29 H 0.028 0.972 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.036 0.964 37 H 0.413 0.587 38 H 0.172 0.828 39 H 0.169 0.831 40 H 0.249 0.751 41 H 0.128 0.872 42 H 0.370 0.630 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.419 16.395 -18.273 25.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 H 0.062 0.938 4 C -0.156 4.156 5 C 0.041 3.959 6 H 0.066 0.934 7 C -0.210 4.210 8 N -0.345 5.345 9 C 0.341 3.659 10 O -0.464 6.464 11 C -0.134 4.134 12 C -0.087 4.087 13 C -0.090 4.090 14 C -0.035 4.035 15 N -0.207 5.207 16 C -0.219 4.219 17 S 0.388 5.612 18 C -0.337 4.337 19 C -0.045 4.045 20 N -0.372 5.372 21 C -0.358 4.358 22 H 0.087 0.913 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.789 3.211 26 H -0.201 1.201 27 H -0.223 1.223 28 H -0.215 1.215 29 H 0.047 0.953 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.129 0.871 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.055 0.945 37 H 0.251 0.749 38 H 0.190 0.810 39 H 0.186 0.814 40 H 0.265 0.735 41 H 0.146 0.854 42 H 0.202 0.798 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.645 16.273 -17.576 24.858 hybrid contribution -0.522 -0.342 1.198 1.351 sum 6.123 15.931 -16.378 23.655 Atomic orbital electron populations 1.22310 0.97677 1.00857 1.00768 1.20550 0.92671 0.95338 0.86006 0.93773 1.22095 0.92444 1.02433 0.98648 1.20896 0.95859 0.80601 0.98541 0.93414 1.22087 1.00363 1.00311 0.98200 1.45719 1.15653 1.11802 1.61332 1.18396 0.82415 0.87562 0.77489 1.90788 1.52866 1.57456 1.45277 1.19886 0.95820 0.93419 1.04246 1.21083 0.99708 0.92000 0.95891 1.20603 0.93287 0.95872 0.99216 1.19809 0.96820 0.87158 0.99668 1.66297 1.12669 1.20770 1.20972 1.29007 0.92877 1.04528 0.95446 1.84084 1.14073 1.02398 1.60670 1.23927 1.00653 0.99411 1.09701 1.20400 0.95887 0.92610 0.95562 1.42603 1.78216 1.10097 1.06276 1.19470 1.34010 0.93780 0.88543 0.91279 1.25396 1.03600 0.96799 1.01084 1.69786 1.53058 1.10079 1.29092 0.85424 0.77873 0.77328 0.80489 1.20083 1.22311 1.21485 0.95309 0.90257 0.93983 0.87105 0.90435 0.91090 0.89649 0.94473 0.74877 0.81031 0.81382 0.73525 0.85446 0.79846 0.94407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.94 9.49 71.98 0.68 -4.26 16 2 C 0.16 5.76 2.84 44.99 0.13 5.89 16 3 H 0.04 1.58 7.56 -2.39 -0.02 1.57 16 4 C -0.12 -3.18 4.29 30.59 0.13 -3.04 16 5 C 0.15 4.53 2.52 44.99 0.11 4.65 16 6 H 0.05 2.11 7.05 -2.39 -0.02 2.09 16 7 C -0.15 -3.87 9.48 71.98 0.68 -3.19 16 8 N -0.69 -19.13 4.40 -445.64 -1.96 -21.09 16 9 C 0.55 18.90 7.73 86.71 0.67 19.57 16 10 O -0.58 -26.07 16.00 -3.99 -0.06 -26.13 16 11 C -0.13 -3.54 5.87 -20.11 -0.12 -3.65 16 12 C -0.07 -1.28 9.44 22.17 0.21 -1.07 16 13 C -0.07 -1.32 10.03 22.43 0.23 -1.10 16 14 C 0.09 2.02 7.00 39.95 0.28 2.30 16 15 N -0.49 -10.27 10.56 -194.44 -2.05 -12.32 16 16 C 0.08 1.22 12.11 130.79 1.58 2.81 16 17 S 0.13 2.35 23.17 -56.49 -1.31 1.04 16 18 C -0.22 -5.41 6.54 22.90 0.15 -5.26 16 19 C -0.02 -0.62 9.62 22.66 0.22 -0.40 16 20 N -0.73 -36.14 4.49 -322.93 -1.45 -37.59 16 21 C -0.23 -12.71 9.93 84.03 0.83 -11.88 16 22 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 23 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 24 N -0.97 -61.47 13.06 21.65 0.28 -61.19 16 25 Si 0.96 48.43 29.55 68.60 2.03 50.45 16 26 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 27 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 28 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 29 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.41 7.83 6.62 -92.71 -0.61 7.21 16 38 H 0.17 2.05 6.38 -2.91 -0.02 2.03 16 39 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.25 1.11 8.06 -2.91 -0.02 1.08 16 41 H 0.13 4.00 7.64 -2.91 -0.02 3.98 16 42 H 0.37 20.01 7.80 -92.71 -0.72 19.29 16 43 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -81.21 375.37 1.44 -79.77 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -0.29 Total: 29.82 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 6.26 Total: -2.75 kcal Atomic # 7 Polarization: -127.01 SS G_CDS: -5.18 Total: -132.19 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.06 Total: -26.13 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.45 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -1.31 Total: 1.04 kcal Total: -81.21 1.44 -79.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136079769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.350 kcal (2) G-P(sol) polarization free energy of solvation -81.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds