Wall clock time and date at job start Tue Mar 31 2020 18:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47160 * 2 1 4 4 C 1.53006 * 109.46626 * 240.00369 * 2 1 3 5 5 C 1.52997 * 109.46646 * 174.99857 * 4 2 1 6 6 H 1.09007 * 109.47194 * 304.99526 * 5 4 2 7 7 C 1.53009 * 109.46881 * 185.00187 * 5 4 2 8 8 N 1.46496 * 109.47462 * 65.00064 * 5 4 2 9 9 C 1.34780 * 119.99967 * 204.99840 * 8 5 4 10 10 O 1.21583 * 120.00397 * 359.97438 * 9 8 5 11 11 C 1.47589 * 119.99957 * 179.97438 * 9 8 5 12 12 C 1.40198 * 120.12472 * 359.72534 * 11 9 8 13 13 C 1.35753 * 120.61390 * 179.68787 * 12 11 9 14 14 C 1.41245 * 120.63530 * 0.60701 * 13 12 11 15 15 N 1.34408 * 129.48197 * 179.69598 * 14 13 12 16 16 C 1.28057 * 117.91531 * 179.97438 * 15 14 13 17 17 S 1.70644 * 111.51694 * 0.02562 * 16 15 14 18 18 C 1.40147 * 118.74265 * 359.67693 * 14 13 12 19 19 C 1.38918 * 120.41225 * 0.02562 * 18 14 13 20 20 N 1.46492 * 109.47381 * 120.00219 * 2 1 3 21 21 C 1.36932 * 120.00155 * 274.99782 * 20 2 1 22 22 H 1.07999 * 119.99968 * 359.97438 * 21 20 2 23 23 C 1.38817 * 120.00306 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99735 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00154 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47140 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46735 * 120.00085 * 25 23 21 28 28 H 1.48498 * 109.47014 * 239.99954 * 25 23 21 29 29 H 1.09002 * 109.46719 * 299.99720 * 1 2 3 30 30 H 1.08993 * 109.47839 * 59.99562 * 1 2 3 31 31 H 1.09000 * 109.47160 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46794 * 294.99833 * 4 2 1 33 33 H 1.09000 * 109.47314 * 54.99967 * 4 2 1 34 34 H 1.09007 * 109.46666 * 299.99662 * 7 5 4 35 35 H 1.08992 * 109.47049 * 59.99758 * 7 5 4 36 36 H 1.08996 * 109.47159 * 180.02562 * 7 5 4 37 37 H 0.97003 * 120.00280 * 24.99636 * 8 5 4 38 38 H 1.07999 * 119.69213 * 0.02562 * 12 11 9 39 39 H 1.07998 * 119.68261 * 180.28311 * 13 12 11 40 40 H 1.08001 * 124.24482 * 180.02562 * 16 15 14 41 41 H 1.07997 * 120.08191 * 179.97438 * 19 18 14 42 42 H 0.97006 * 119.99963 * 94.99930 * 20 2 1 43 43 H 0.96993 * 120.00025 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5647 -0.6132 -1.3138 6 1 3.8569 0.4359 -1.2680 7 6 4.0643 -1.2249 -2.6244 8 7 4.1536 -1.3342 -0.1827 9 6 5.3748 -0.9910 0.2730 10 8 5.9878 -0.0835 -0.2550 11 6 5.9679 -1.7169 1.4129 12 6 5.2609 -2.7601 2.0274 13 6 5.7996 -3.4386 3.0726 14 6 7.0773 -3.0987 3.5696 15 7 7.7707 -3.6400 4.5858 16 6 8.9255 -3.1535 4.8498 17 16 9.3212 -1.8724 3.7944 18 6 7.7814 -2.0521 2.9589 19 6 7.2286 -1.3647 1.8857 20 7 2.0184 -0.6906 1.1961 21 6 2.1492 -0.0076 2.3756 22 1 1.8928 1.0404 2.4241 23 6 2.6125 -0.6618 3.5089 24 7 2.9265 -1.9387 3.4495 25 14 2.7917 0.2702 5.1178 26 1 2.3766 1.6822 4.9208 27 1 1.9315 -0.3584 6.1523 28 1 4.2088 0.2273 5.5595 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7515 -1.7714 -1.2057 33 1 1.6052 -0.2617 -2.1371 34 1 3.7721 -2.2740 -2.6702 35 1 3.6261 -0.6885 -3.4659 36 1 5.1506 -1.1484 -2.6701 37 1 3.6647 -2.0585 0.2384 38 1 4.2809 -3.0299 1.6625 39 1 5.2437 -4.2426 3.5318 40 1 9.5684 -3.5095 5.6413 41 1 7.7758 -0.5588 1.4194 42 1 2.2491 -1.6318 1.1524 43 1 3.2498 -2.3960 4.2414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136079770.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:20 Heat of formation + Delta-G solvation = 35.775325 kcal Electronic energy + Delta-G solvation = -27180.945940 eV Core-core repulsion = 23546.107890 eV Total energy + Delta-G solvation = -3634.838050 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -40.22826 -39.20047 -37.00757 -36.05664 -34.22853 -32.41084 -31.00106 -30.68899 -29.33374 -28.49039 -26.37785 -25.15857 -23.72596 -23.08375 -21.92917 -20.88238 -20.27407 -19.67796 -18.37138 -17.25241 -16.97190 -16.22993 -15.62408 -15.34785 -14.81729 -14.63829 -14.26294 -14.11971 -13.84168 -13.59115 -13.53625 -13.30258 -12.98760 -12.74337 -12.44598 -12.19387 -12.11498 -11.92648 -11.75809 -11.69946 -11.37780 -11.02793 -10.88218 -10.78515 -10.53987 -10.39347 -10.26375 -9.94692 -9.86548 -9.72507 -9.51633 -9.37672 -9.02340 -8.49560 -8.30669 -7.78398 -6.98610 -5.88337 -3.09743 0.46888 1.44402 1.63444 1.89127 2.35418 3.39952 3.46885 3.48079 3.49678 3.75012 4.19148 4.32976 4.54907 4.92720 5.03834 5.24252 5.29615 5.38784 5.47000 5.51079 5.59945 5.63372 5.65041 5.81992 5.90074 5.92977 5.98248 6.09974 6.20148 6.21833 6.32557 6.35651 6.41196 6.51840 6.55447 6.65351 6.79381 6.81348 7.00091 7.05732 7.13616 7.65773 7.77474 8.12306 8.32482 8.81826 9.44635 9.96216 10.32174 11.34013 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011649 B = 0.005009 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.106171 B = 5588.041704 C = 7177.390432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.168 3.832 3 H 0.049 0.951 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.084 0.916 7 C -0.163 4.163 8 N -0.690 5.690 9 C 0.573 3.427 10 O -0.560 6.560 11 C -0.108 4.108 12 C -0.013 4.013 13 C -0.064 4.064 14 C 0.091 3.909 15 N -0.463 5.463 16 C 0.059 3.941 17 S 0.075 5.925 18 C -0.195 4.195 19 C -0.019 4.019 20 N -0.715 5.715 21 C -0.222 4.222 22 H 0.068 0.932 23 C -0.007 4.007 24 N -0.925 5.925 25 Si 0.897 3.103 26 H -0.283 1.283 27 H -0.293 1.293 28 H -0.293 1.293 29 H 0.052 0.948 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.404 0.596 38 H 0.149 0.851 39 H 0.135 0.865 40 H 0.199 0.801 41 H 0.136 0.864 42 H 0.376 0.624 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.604 -3.579 -6.071 9.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.059 3.941 3 H 0.067 0.933 4 C -0.173 4.173 5 C 0.045 3.955 6 H 0.102 0.898 7 C -0.221 4.221 8 N -0.343 5.343 9 C 0.361 3.639 10 O -0.441 6.441 11 C -0.115 4.115 12 C -0.035 4.035 13 C -0.085 4.085 14 C -0.029 4.029 15 N -0.175 5.175 16 C -0.246 4.246 17 S 0.327 5.673 18 C -0.313 4.313 19 C -0.042 4.042 20 N -0.358 5.358 21 C -0.353 4.353 22 H 0.085 0.915 23 C -0.203 4.203 24 N -0.573 5.573 25 Si 0.729 3.271 26 H -0.209 1.209 27 H -0.221 1.221 28 H -0.221 1.221 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.243 0.757 38 H 0.167 0.833 39 H 0.153 0.847 40 H 0.216 0.784 41 H 0.154 0.846 42 H 0.211 0.789 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.682 -2.640 -6.014 10.107 hybrid contribution -0.984 -0.296 1.336 1.686 sum 6.698 -2.935 -4.678 8.681 Atomic orbital electron populations 1.22411 0.99210 1.00741 0.99967 1.20301 0.91726 0.95791 0.86322 0.93339 1.22220 0.93916 1.01667 0.99464 1.20836 0.92516 0.97362 0.84815 0.89759 1.22212 1.01848 1.00859 0.97186 1.45874 1.17473 1.37435 1.33475 1.17856 0.81353 0.82602 0.82110 1.90695 1.62364 1.31066 1.59931 1.19876 0.94697 0.98637 0.98297 1.20856 0.97669 0.91681 0.93279 1.20183 0.91030 1.01095 0.96186 1.19400 0.96721 0.94009 0.92725 1.66143 1.06168 1.29157 1.16069 1.28020 0.96133 0.97325 1.03096 1.83765 1.17145 1.37221 1.29201 1.23493 0.98968 1.04225 1.04609 1.20262 0.94193 0.97224 0.92568 1.42464 1.77822 1.10063 1.05476 1.19244 1.35107 0.93801 0.87135 0.91450 1.24483 1.02339 0.96035 0.97461 1.69485 1.50908 1.08287 1.28665 0.86247 0.77304 0.78930 0.84571 1.20880 1.22055 1.22055 0.92869 0.94560 0.93584 0.91690 0.90689 0.92749 0.92062 0.92333 0.75713 0.83316 0.84739 0.78415 0.84624 0.78896 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.49 37.16 0.35 -2.31 16 2 C 0.17 2.96 2.89 -67.93 -0.20 2.77 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 4 C -0.13 -1.88 4.43 -26.73 -0.12 -2.00 16 5 C 0.15 2.29 2.57 -67.93 -0.17 2.11 16 6 H 0.08 1.48 7.58 -51.93 -0.39 1.08 16 7 C -0.16 -2.08 9.48 37.16 0.35 -1.72 16 8 N -0.69 -11.87 3.75 -54.83 -0.21 -12.07 16 9 C 0.57 11.23 7.73 -12.44 -0.10 11.14 16 10 O -0.56 -12.17 16.00 5.29 0.08 -12.08 16 11 C -0.11 -2.07 5.87 -105.00 -0.62 -2.69 16 12 C -0.01 -0.24 7.72 -39.74 -0.31 -0.54 16 13 C -0.06 -1.16 10.03 -39.33 -0.39 -1.56 16 14 C 0.09 1.67 7.00 -84.88 -0.59 1.08 16 15 N -0.46 -7.85 10.56 -12.83 -0.14 -7.98 16 16 C 0.06 0.79 12.11 51.19 0.62 1.41 16 17 S 0.07 1.02 23.17 -107.50 -2.49 -1.47 16 18 C -0.19 -3.43 6.54 -38.61 -0.25 -3.68 16 19 C -0.02 -0.35 9.62 -38.98 -0.37 -0.73 16 20 N -0.72 -15.17 3.84 -53.43 -0.21 -15.38 16 21 C -0.22 -5.54 9.93 -15.06 -0.15 -5.69 16 22 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 23 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 24 N -0.92 -23.05 10.66 55.49 0.59 -22.46 16 25 Si 0.90 21.95 29.55 -169.99 -5.02 16.93 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.40 6.86 4.53 -40.82 -0.18 6.67 16 38 H 0.15 2.71 5.79 -52.49 -0.30 2.41 16 39 H 0.13 2.31 8.06 -52.49 -0.42 1.89 16 40 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.14 2.40 7.64 -52.49 -0.40 2.00 16 42 H 0.38 8.02 5.70 -40.82 -0.23 7.78 16 43 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 LS Contribution 366.47 15.07 5.52 5.52 Total: -1.00 -28.75 366.47 -9.62 -38.37 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -5.71 Total: 13.34 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -2.05 Total: -2.70 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.05 Total: -57.90 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.08 Total: -12.08 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.75 -9.62 -38.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136079770.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.146 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds