Wall clock time and date at job start Tue Mar 31 2020 18:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47160 * 2 1 4 4 C 1.53006 * 109.46626 * 240.00369 * 2 1 3 5 5 C 1.52997 * 109.46646 * 174.99857 * 4 2 1 6 6 H 1.09007 * 109.47194 * 304.99526 * 5 4 2 7 7 C 1.53009 * 109.46881 * 185.00187 * 5 4 2 8 8 N 1.46496 * 109.47462 * 65.00064 * 5 4 2 9 9 C 1.34780 * 119.99967 * 204.99840 * 8 5 4 10 10 O 1.21583 * 120.00397 * 359.97438 * 9 8 5 11 11 C 1.47589 * 119.99957 * 179.97438 * 9 8 5 12 12 C 1.40198 * 120.12472 * 359.72534 * 11 9 8 13 13 C 1.35753 * 120.61390 * 179.68787 * 12 11 9 14 14 C 1.41245 * 120.63530 * 0.60701 * 13 12 11 15 15 N 1.34408 * 129.48197 * 179.69598 * 14 13 12 16 16 C 1.28057 * 117.91531 * 179.97438 * 15 14 13 17 17 S 1.70644 * 111.51694 * 0.02562 * 16 15 14 18 18 C 1.40147 * 118.74265 * 359.67693 * 14 13 12 19 19 C 1.38918 * 120.41225 * 0.02562 * 18 14 13 20 20 N 1.46492 * 109.47381 * 120.00219 * 2 1 3 21 21 C 1.36932 * 120.00155 * 274.99782 * 20 2 1 22 22 H 1.07999 * 119.99968 * 359.97438 * 21 20 2 23 23 C 1.38817 * 120.00306 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99735 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00154 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47140 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46735 * 120.00085 * 25 23 21 28 28 H 1.48498 * 109.47014 * 239.99954 * 25 23 21 29 29 H 1.09002 * 109.46719 * 299.99720 * 1 2 3 30 30 H 1.08993 * 109.47839 * 59.99562 * 1 2 3 31 31 H 1.09000 * 109.47160 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46794 * 294.99833 * 4 2 1 33 33 H 1.09000 * 109.47314 * 54.99967 * 4 2 1 34 34 H 1.09007 * 109.46666 * 299.99662 * 7 5 4 35 35 H 1.08992 * 109.47049 * 59.99758 * 7 5 4 36 36 H 1.08996 * 109.47159 * 180.02562 * 7 5 4 37 37 H 0.97003 * 120.00280 * 24.99636 * 8 5 4 38 38 H 1.07999 * 119.69213 * 0.02562 * 12 11 9 39 39 H 1.07998 * 119.68261 * 180.28311 * 13 12 11 40 40 H 1.08001 * 124.24482 * 180.02562 * 16 15 14 41 41 H 1.07997 * 120.08191 * 179.97438 * 19 18 14 42 42 H 0.97006 * 119.99963 * 94.99930 * 20 2 1 43 43 H 0.96993 * 120.00025 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5647 -0.6132 -1.3138 6 1 3.8569 0.4359 -1.2680 7 6 4.0643 -1.2249 -2.6244 8 7 4.1536 -1.3342 -0.1827 9 6 5.3748 -0.9910 0.2730 10 8 5.9878 -0.0835 -0.2550 11 6 5.9679 -1.7169 1.4129 12 6 5.2609 -2.7601 2.0274 13 6 5.7996 -3.4386 3.0726 14 6 7.0773 -3.0987 3.5696 15 7 7.7707 -3.6400 4.5858 16 6 8.9255 -3.1535 4.8498 17 16 9.3212 -1.8724 3.7944 18 6 7.7814 -2.0521 2.9589 19 6 7.2286 -1.3647 1.8857 20 7 2.0184 -0.6906 1.1961 21 6 2.1492 -0.0076 2.3756 22 1 1.8928 1.0404 2.4241 23 6 2.6125 -0.6618 3.5089 24 7 2.9265 -1.9387 3.4495 25 14 2.7917 0.2702 5.1178 26 1 2.3766 1.6822 4.9208 27 1 1.9315 -0.3584 6.1523 28 1 4.2088 0.2273 5.5595 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7515 -1.7714 -1.2057 33 1 1.6052 -0.2617 -2.1371 34 1 3.7721 -2.2740 -2.6702 35 1 3.6261 -0.6885 -3.4659 36 1 5.1506 -1.1484 -2.6701 37 1 3.6647 -2.0585 0.2384 38 1 4.2809 -3.0299 1.6625 39 1 5.2437 -4.2426 3.5318 40 1 9.5684 -3.5095 5.6413 41 1 7.7758 -0.5588 1.4194 42 1 2.2491 -1.6318 1.1524 43 1 3.2498 -2.3960 4.2414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136079770.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:19 Heat of formation + Delta-G solvation = 19.315297 kcal Electronic energy + Delta-G solvation = -27181.659700 eV Core-core repulsion = 23546.107890 eV Total energy + Delta-G solvation = -3635.551810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.58971 -40.58532 -38.41773 -37.45582 -35.77832 -34.06827 -32.43378 -32.08449 -30.75934 -30.00315 -27.57564 -26.42192 -25.53676 -24.43726 -23.27138 -22.19347 -21.67187 -21.11327 -19.67538 -19.07787 -18.32560 -17.56945 -16.95609 -16.77898 -16.44523 -16.03107 -15.64598 -15.59703 -15.48128 -15.13334 -14.91912 -14.54049 -14.33360 -14.17334 -13.84704 -13.56152 -13.42640 -13.29978 -13.16956 -12.92816 -12.79142 -12.70791 -12.59826 -12.26236 -12.13299 -11.87271 -11.68279 -11.58053 -11.38565 -11.14925 -10.91949 -10.84695 -10.70225 -9.94490 -9.65222 -9.06706 -8.75418 -7.83462 -5.01401 -0.81828 0.21983 0.25592 0.69333 1.05062 1.39783 1.46877 1.48559 2.04755 2.38366 2.59637 2.87486 3.07204 3.52028 3.58970 3.75165 3.91248 4.06412 4.17004 4.20223 4.22506 4.26677 4.40302 4.54978 4.60127 4.71628 4.82443 4.86778 4.90627 4.94238 5.03846 5.10883 5.16403 5.18614 5.24933 5.38630 5.40641 5.45033 5.63886 5.64802 5.68958 5.78087 6.40242 6.55152 6.68290 7.34590 7.50212 8.20091 8.48528 9.36364 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011649 B = 0.005009 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.106171 B = 5588.041704 C = 7177.390432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.161 3.839 3 H 0.028 0.972 4 C -0.120 4.120 5 C 0.144 3.856 6 H 0.058 0.942 7 C -0.152 4.152 8 N -0.682 5.682 9 C 0.567 3.433 10 O -0.590 6.590 11 C -0.130 4.130 12 C -0.010 4.010 13 C -0.079 4.079 14 C 0.084 3.916 15 N -0.499 5.499 16 C 0.078 3.922 17 S 0.132 5.868 18 C -0.224 4.224 19 C -0.025 4.025 20 N -0.718 5.718 21 C -0.223 4.223 22 H 0.052 0.948 23 C -0.040 4.040 24 N -0.922 5.922 25 Si 0.928 3.072 26 H -0.284 1.284 27 H -0.297 1.297 28 H -0.311 1.311 29 H 0.027 0.973 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.039 0.961 37 H 0.405 0.595 38 H 0.147 0.853 39 H 0.138 0.862 40 H 0.248 0.752 41 H 0.136 0.864 42 H 0.376 0.624 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.163 -4.289 -6.710 10.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.047 0.953 4 C -0.158 4.158 5 C 0.040 3.960 6 H 0.077 0.923 7 C -0.211 4.211 8 N -0.333 5.333 9 C 0.355 3.645 10 O -0.474 6.474 11 C -0.136 4.136 12 C -0.031 4.031 13 C -0.100 4.100 14 C -0.036 4.036 15 N -0.212 5.212 16 C -0.226 4.226 17 S 0.385 5.615 18 C -0.342 4.342 19 C -0.048 4.048 20 N -0.361 5.361 21 C -0.356 4.356 22 H 0.070 0.930 23 C -0.235 4.235 24 N -0.571 5.571 25 Si 0.762 3.238 26 H -0.210 1.210 27 H -0.225 1.225 28 H -0.240 1.240 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.058 0.942 37 H 0.244 0.756 38 H 0.164 0.836 39 H 0.156 0.844 40 H 0.264 0.736 41 H 0.154 0.846 42 H 0.210 0.790 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.221 -3.347 -6.688 11.113 hybrid contribution -0.995 -0.044 1.588 1.875 sum 7.226 -3.391 -5.099 9.471 Atomic orbital electron populations 1.22265 0.97677 1.01056 1.00330 1.20496 0.92708 0.94936 0.86563 0.95347 1.22141 0.92619 1.02291 0.98773 1.21013 0.93498 0.96028 0.85431 0.92338 1.22116 1.00670 1.01982 0.96284 1.45929 1.16651 1.37100 1.33649 1.18043 0.81926 0.82339 0.82180 1.90660 1.63275 1.32435 1.61011 1.19970 0.95456 0.99360 0.98854 1.20765 0.97468 0.91548 0.93367 1.20279 0.91676 1.01551 0.96477 1.19631 0.96858 0.94053 0.93059 1.66226 1.07748 1.30623 1.16608 1.28954 0.95144 0.95734 1.02731 1.83593 1.13841 1.36424 1.27607 1.23831 1.01398 1.04205 1.04773 1.20351 0.94167 0.97302 0.92964 1.42479 1.78073 1.09960 1.05577 1.19220 1.34510 0.93282 0.88543 0.92988 1.24779 1.03563 0.96740 0.98420 1.69530 1.51519 1.07976 1.28122 0.85758 0.75847 0.78474 0.83697 1.20985 1.22471 1.23985 0.95359 0.91352 0.93213 0.90293 0.87189 0.91171 0.89427 0.94222 0.75559 0.83600 0.84386 0.73574 0.84634 0.78971 0.94195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 9.49 71.98 0.68 -4.05 16 2 C 0.16 5.53 2.89 44.99 0.13 5.66 16 3 H 0.03 1.09 8.08 -2.39 -0.02 1.07 16 4 C -0.12 -3.08 4.43 30.60 0.14 -2.95 16 5 C 0.14 4.29 2.57 44.99 0.12 4.41 16 6 H 0.06 2.06 7.58 -2.38 -0.02 2.04 16 7 C -0.15 -3.59 9.48 71.99 0.68 -2.91 16 8 N -0.68 -23.67 3.75 -445.64 -1.67 -25.34 16 9 C 0.57 22.92 7.73 86.71 0.67 23.59 16 10 O -0.59 -26.57 16.00 -3.98 -0.06 -26.64 16 11 C -0.13 -5.13 5.87 -20.11 -0.12 -5.25 16 12 C -0.01 -0.36 7.72 22.17 0.17 -0.19 16 13 C -0.08 -2.93 10.03 22.43 0.23 -2.71 16 14 C 0.08 3.08 7.00 39.95 0.28 3.36 16 15 N -0.50 -16.15 10.56 -194.45 -2.05 -18.20 16 16 C 0.08 1.83 12.11 130.79 1.58 3.41 16 17 S 0.13 3.30 23.17 -56.49 -1.31 1.99 16 18 C -0.22 -7.81 6.54 22.90 0.15 -7.66 16 19 C -0.02 -0.93 9.62 22.66 0.22 -0.71 16 20 N -0.72 -30.52 3.84 -322.95 -1.24 -31.76 16 21 C -0.22 -11.32 9.93 84.04 0.83 -10.49 16 22 H 0.05 2.76 7.83 -2.91 -0.02 2.74 16 23 C -0.04 -2.08 5.50 84.86 0.47 -1.62 16 24 N -0.92 -46.61 10.66 21.65 0.23 -46.37 16 25 Si 0.93 45.80 29.55 68.60 2.03 47.83 16 26 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 27 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 28 H -0.31 -16.16 7.11 99.48 0.71 -15.46 16 29 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.41 13.83 4.53 -92.71 -0.42 13.41 16 38 H 0.15 5.49 5.79 -2.91 -0.02 5.47 16 39 H 0.14 4.89 8.06 -2.91 -0.02 4.86 16 40 H 0.25 3.08 8.06 -2.91 -0.02 3.06 16 41 H 0.14 4.96 7.64 -2.91 -0.02 4.94 16 42 H 0.38 15.98 5.70 -92.70 -0.53 15.45 16 43 H 0.25 12.80 8.31 -92.71 -0.77 12.03 16 Total: -1.00 -64.26 366.47 2.25 -62.02 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: 0.10 Total: 34.57 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 6.23 Total: 1.90 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -4.73 Total: -121.67 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.06 Total: -26.64 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.31 Total: 1.99 kcal Total: -64.26 2.25 -62.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136079770.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.333 kcal (2) G-P(sol) polarization free energy of solvation -64.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds