Wall clock time and date at job start Tue Mar 31 2020 18:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47205 * 2 1 4 4 C 1.53002 * 109.46583 * 120.00126 * 2 1 3 5 5 C 1.53006 * 109.46967 * 185.00056 * 4 2 1 6 6 H 1.08996 * 109.47086 * 304.99649 * 5 4 2 7 7 C 1.53001 * 109.47156 * 184.99813 * 5 4 2 8 8 N 1.46499 * 109.46847 * 64.99767 * 5 4 2 9 9 C 1.34781 * 119.99590 * 204.99913 * 8 5 4 10 10 O 1.21580 * 120.00417 * 0.02562 * 9 8 5 11 11 C 1.47594 * 119.99462 * 179.97438 * 9 8 5 12 12 C 1.40188 * 120.12899 * 0.02562 * 11 9 8 13 13 C 1.35752 * 120.61519 * 179.73983 * 12 11 9 14 14 C 1.41252 * 120.63505 * 0.25835 * 13 12 11 15 15 N 1.34411 * 129.47869 * 180.02562 * 14 13 12 16 16 C 1.28059 * 117.91271 * 179.97438 * 15 14 13 17 17 S 1.70651 * 111.51733 * 359.97438 * 16 15 14 18 18 C 1.40147 * 118.74110 * 359.97438 * 14 13 12 19 19 C 1.38912 * 120.40965 * 0.02562 * 18 14 13 20 20 N 1.46500 * 109.47220 * 239.99365 * 2 1 3 21 21 C 1.36941 * 119.99645 * 85.00710 * 20 2 1 22 22 H 1.08003 * 119.99678 * 359.97438 * 21 20 2 23 23 C 1.38814 * 120.00175 * 179.97438 * 21 20 2 24 24 N 1.31617 * 119.99817 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99967 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47329 * 59.99970 * 25 23 21 27 27 H 1.48500 * 109.46940 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47001 * 299.99791 * 25 23 21 29 29 H 1.08998 * 109.47311 * 300.00166 * 1 2 3 30 30 H 1.09004 * 109.46535 * 60.00495 * 1 2 3 31 31 H 1.09004 * 109.46928 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47583 * 64.99826 * 4 2 1 33 33 H 1.09000 * 109.47205 * 304.99475 * 4 2 1 34 34 H 1.09003 * 109.46678 * 299.99656 * 7 5 4 35 35 H 1.09003 * 109.47291 * 59.99671 * 7 5 4 36 36 H 1.08997 * 109.46872 * 180.02562 * 7 5 4 37 37 H 0.96995 * 120.00364 * 25.00187 * 8 5 4 38 38 H 1.08002 * 119.69558 * 0.02562 * 12 11 9 39 39 H 1.07997 * 119.68640 * 180.27632 * 13 12 11 40 40 H 1.07997 * 124.24320 * 180.02562 * 16 15 14 41 41 H 1.08001 * 120.07100 * 180.02562 * 19 18 14 42 42 H 0.96997 * 120.00317 * 265.00194 * 20 2 1 43 43 H 0.96995 * 120.00055 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6134 1.3138 6 1 3.9954 -0.9924 0.3870 7 6 4.0850 -1.4384 2.4927 8 7 3.9479 0.7893 1.4926 9 6 5.1612 1.2134 1.0869 10 8 5.9375 0.4321 0.5722 11 6 5.5469 2.6267 1.2665 12 6 4.6536 3.5300 1.8592 13 6 5.0001 4.8309 2.0339 14 6 6.2652 5.3010 1.6172 15 7 6.7882 6.5363 1.7020 16 6 7.9721 6.7184 1.2490 17 16 8.6294 5.2758 0.6173 18 6 7.1563 4.3989 1.0203 19 6 6.7971 3.0687 0.8437 20 7 2.0184 -0.6907 -1.1961 21 6 2.1493 -0.0076 -2.3757 22 1 1.8921 1.0402 -2.4243 23 6 2.6125 -0.6619 -3.5090 24 7 2.9264 -1.9387 -3.4496 25 14 2.7904 0.2698 -5.1182 26 1 3.7448 1.3929 -4.9371 27 1 3.3006 -0.6483 -6.1679 28 1 1.4676 0.8056 -5.5288 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7515 -1.7715 1.2057 33 1 1.6053 -0.2617 2.1370 34 1 3.6544 -1.0593 3.4195 35 1 3.7999 -2.4820 2.3597 36 1 5.1713 -1.3611 2.5389 37 1 3.3284 1.4128 1.9029 38 1 3.6824 3.1869 2.1839 39 1 4.3019 5.5129 2.4963 40 1 8.4899 7.6660 1.2654 41 1 7.4882 2.3780 0.3834 42 1 2.2491 -1.6319 -1.1525 43 1 3.2497 -2.3960 -4.2415 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136079771.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:25 Heat of formation + Delta-G solvation = 28.393718 kcal Electronic energy + Delta-G solvation = -25920.871866 eV Core-core repulsion = 22285.713726 eV Total energy + Delta-G solvation = -3635.158141 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.79096 -39.53240 -37.17667 -36.45404 -34.50324 -32.25381 -31.44457 -31.18050 -29.63499 -28.57167 -26.33364 -25.69312 -23.71788 -23.47487 -22.48564 -21.21889 -20.33628 -19.72052 -18.97210 -17.58196 -17.07297 -16.62823 -16.15688 -15.60092 -15.15606 -14.80210 -14.62789 -14.29403 -14.12752 -13.97999 -13.81759 -13.63059 -13.09364 -13.04346 -12.71127 -12.66299 -12.18901 -12.03928 -11.89112 -11.72773 -11.59997 -11.14945 -11.03055 -10.79593 -10.60455 -10.46194 -10.42078 -10.22871 -9.99368 -9.89575 -9.73011 -9.58933 -9.03579 -8.85000 -8.73565 -8.38235 -6.89701 -5.70331 -2.98252 -0.08607 0.89922 0.94092 1.41204 1.80792 2.97918 3.32116 3.47774 3.52599 3.52950 3.66185 3.72044 4.33515 4.64399 4.66996 4.69886 4.89553 4.94968 5.10939 5.24270 5.40922 5.48236 5.53702 5.63301 5.68989 5.79785 5.86651 5.89455 5.94274 6.00473 6.02263 6.13485 6.28314 6.31069 6.36187 6.44726 6.57442 6.70286 6.80014 6.92344 7.08480 7.23486 7.72722 7.74602 8.44821 8.48256 9.59471 10.16568 10.50708 11.52376 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010699 B = 0.003480 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.447642 B = 8043.365430 C = 9315.088971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.143 3.857 6 H 0.108 0.892 7 C -0.161 4.161 8 N -0.708 5.708 9 C 0.559 3.441 10 O -0.525 6.525 11 C -0.107 4.107 12 C -0.076 4.076 13 C -0.069 4.069 14 C 0.094 3.906 15 N -0.468 5.468 16 C 0.065 3.935 17 S 0.113 5.887 18 C -0.191 4.191 19 C -0.007 4.007 20 N -0.720 5.720 21 C -0.235 4.235 22 H 0.066 0.934 23 C -0.010 4.010 24 N -0.931 5.931 25 Si 0.902 3.098 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.287 1.287 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.394 0.606 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.205 0.795 41 H 0.147 0.853 42 H 0.383 0.617 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.745 13.478 15.964 21.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.040 3.960 6 H 0.126 0.874 7 C -0.219 4.219 8 N -0.359 5.359 9 C 0.345 3.655 10 O -0.402 6.402 11 C -0.114 4.114 12 C -0.097 4.097 13 C -0.090 4.090 14 C -0.027 4.027 15 N -0.180 5.180 16 C -0.239 4.239 17 S 0.367 5.633 18 C -0.309 4.309 19 C -0.030 4.030 20 N -0.362 5.362 21 C -0.367 4.367 22 H 0.084 0.916 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.733 3.267 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.214 1.214 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.228 0.772 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.222 0.778 41 H 0.164 0.836 42 H 0.217 0.783 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.031 13.302 15.213 21.746 hybrid contribution -1.003 0.424 -0.560 1.225 sum 7.028 13.726 14.653 21.272 Atomic orbital electron populations 1.22463 0.99535 1.00822 0.99764 1.20225 0.91576 0.95526 0.86563 0.93667 1.22181 0.93601 1.02361 0.98855 1.21086 0.95222 0.79680 1.00052 0.87432 1.22187 1.01562 1.00238 0.97952 1.45865 1.15996 1.11901 1.62158 1.17896 0.82437 0.86698 0.78462 1.90820 1.51130 1.55741 1.42487 1.20017 0.94860 0.94491 1.02013 1.20841 0.99240 0.92501 0.97165 1.20255 0.93309 0.95621 0.99813 1.19387 0.96225 0.86843 1.00225 1.66201 1.11339 1.21263 1.19227 1.28206 0.93856 1.03492 0.98324 1.84122 1.15558 1.02648 1.60968 1.23751 0.98791 0.99759 1.08641 1.20460 0.95710 0.91962 0.94871 1.42383 1.77989 1.10544 1.05251 1.19108 1.36529 0.93646 0.87376 0.91587 1.24677 1.02159 0.95917 0.97898 1.69630 1.50861 1.08614 1.28877 0.86349 0.77663 0.78731 0.83947 1.21405 1.21699 1.21403 0.94717 0.92913 0.93518 0.90479 0.92011 0.93093 0.91609 0.92480 0.77165 0.84246 0.84160 0.77830 0.83562 0.78331 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.49 37.16 0.35 -2.48 16 2 C 0.17 3.17 2.84 -67.93 -0.19 2.98 16 3 H 0.05 0.85 7.56 -51.93 -0.39 0.46 16 4 C -0.13 -1.93 4.29 -26.73 -0.11 -2.04 16 5 C 0.14 2.25 2.52 -67.93 -0.17 2.08 16 6 H 0.11 2.24 7.05 -51.93 -0.37 1.88 16 7 C -0.16 -2.14 9.48 37.16 0.35 -1.79 16 8 N -0.71 -10.05 4.40 -54.83 -0.24 -10.29 16 9 C 0.56 9.21 7.73 -12.44 -0.10 9.11 16 10 O -0.52 -10.87 16.00 5.30 0.08 -10.78 16 11 C -0.11 -1.46 5.87 -105.00 -0.62 -2.08 16 12 C -0.08 -0.82 9.44 -39.74 -0.38 -1.19 16 13 C -0.07 -0.74 10.03 -39.33 -0.39 -1.14 16 14 C 0.09 1.17 7.00 -84.88 -0.59 0.57 16 15 N -0.47 -5.42 10.56 -12.83 -0.14 -5.55 16 16 C 0.07 0.56 12.11 51.19 0.62 1.18 16 17 S 0.11 1.06 23.17 -107.50 -2.49 -1.43 16 18 C -0.19 -2.38 6.54 -38.62 -0.25 -2.63 16 19 C -0.01 -0.10 9.62 -38.98 -0.37 -0.47 16 20 N -0.72 -17.50 4.49 -53.42 -0.24 -17.74 16 21 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 22 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 24 N -0.93 -28.46 13.06 55.49 0.72 -27.73 16 25 Si 0.90 23.01 29.55 -169.99 -5.02 17.99 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.39 4.29 6.62 -40.82 -0.27 4.02 16 38 H 0.14 1.09 6.38 -52.49 -0.33 0.75 16 39 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.21 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.15 2.05 7.64 -52.49 -0.40 1.65 16 42 H 0.38 9.99 7.80 -40.82 -0.32 9.68 16 43 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 375.37 15.07 5.66 5.66 Total: -1.00 -34.70 375.37 -9.62 -44.32 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -5.86 Total: 10.54 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -2.10 Total: -4.98 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: 0.11 Total: -61.31 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.78 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.49 Total: -1.43 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.70 -9.62 -44.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136079771.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.715 kcal (2) G-P(sol) polarization free energy of solvation -34.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds