Wall clock time and date at job start Tue Mar 31 2020 18:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47205 * 2 1 4 4 C 1.53002 * 109.46583 * 120.00126 * 2 1 3 5 5 C 1.53006 * 109.46967 * 185.00056 * 4 2 1 6 6 H 1.08996 * 109.47086 * 304.99649 * 5 4 2 7 7 C 1.53001 * 109.47156 * 184.99813 * 5 4 2 8 8 N 1.46499 * 109.46847 * 64.99767 * 5 4 2 9 9 C 1.34781 * 119.99590 * 204.99913 * 8 5 4 10 10 O 1.21580 * 120.00417 * 0.02562 * 9 8 5 11 11 C 1.47594 * 119.99462 * 179.97438 * 9 8 5 12 12 C 1.40188 * 120.12899 * 0.02562 * 11 9 8 13 13 C 1.35752 * 120.61519 * 179.73983 * 12 11 9 14 14 C 1.41252 * 120.63505 * 0.25835 * 13 12 11 15 15 N 1.34411 * 129.47869 * 180.02562 * 14 13 12 16 16 C 1.28059 * 117.91271 * 179.97438 * 15 14 13 17 17 S 1.70651 * 111.51733 * 359.97438 * 16 15 14 18 18 C 1.40147 * 118.74110 * 359.97438 * 14 13 12 19 19 C 1.38912 * 120.40965 * 0.02562 * 18 14 13 20 20 N 1.46500 * 109.47220 * 239.99365 * 2 1 3 21 21 C 1.36941 * 119.99645 * 85.00710 * 20 2 1 22 22 H 1.08003 * 119.99678 * 359.97438 * 21 20 2 23 23 C 1.38814 * 120.00175 * 179.97438 * 21 20 2 24 24 N 1.31617 * 119.99817 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99967 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47329 * 59.99970 * 25 23 21 27 27 H 1.48500 * 109.46940 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47001 * 299.99791 * 25 23 21 29 29 H 1.08998 * 109.47311 * 300.00166 * 1 2 3 30 30 H 1.09004 * 109.46535 * 60.00495 * 1 2 3 31 31 H 1.09004 * 109.46928 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47583 * 64.99826 * 4 2 1 33 33 H 1.09000 * 109.47205 * 304.99475 * 4 2 1 34 34 H 1.09003 * 109.46678 * 299.99656 * 7 5 4 35 35 H 1.09003 * 109.47291 * 59.99671 * 7 5 4 36 36 H 1.08997 * 109.46872 * 180.02562 * 7 5 4 37 37 H 0.96995 * 120.00364 * 25.00187 * 8 5 4 38 38 H 1.08002 * 119.69558 * 0.02562 * 12 11 9 39 39 H 1.07997 * 119.68640 * 180.27632 * 13 12 11 40 40 H 1.07997 * 124.24320 * 180.02562 * 16 15 14 41 41 H 1.08001 * 120.07100 * 180.02562 * 19 18 14 42 42 H 0.96997 * 120.00317 * 265.00194 * 20 2 1 43 43 H 0.96995 * 120.00055 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6134 1.3138 6 1 3.9954 -0.9924 0.3870 7 6 4.0850 -1.4384 2.4927 8 7 3.9479 0.7893 1.4926 9 6 5.1612 1.2134 1.0869 10 8 5.9375 0.4321 0.5722 11 6 5.5469 2.6267 1.2665 12 6 4.6536 3.5300 1.8592 13 6 5.0001 4.8309 2.0339 14 6 6.2652 5.3010 1.6172 15 7 6.7882 6.5363 1.7020 16 6 7.9721 6.7184 1.2490 17 16 8.6294 5.2758 0.6173 18 6 7.1563 4.3989 1.0203 19 6 6.7971 3.0687 0.8437 20 7 2.0184 -0.6907 -1.1961 21 6 2.1493 -0.0076 -2.3757 22 1 1.8921 1.0402 -2.4243 23 6 2.6125 -0.6619 -3.5090 24 7 2.9264 -1.9387 -3.4496 25 14 2.7904 0.2698 -5.1182 26 1 3.7448 1.3929 -4.9371 27 1 3.3006 -0.6483 -6.1679 28 1 1.4676 0.8056 -5.5288 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7515 -1.7715 1.2057 33 1 1.6053 -0.2617 2.1370 34 1 3.6544 -1.0593 3.4195 35 1 3.7999 -2.4820 2.3597 36 1 5.1713 -1.3611 2.5389 37 1 3.3284 1.4128 1.9029 38 1 3.6824 3.1869 2.1839 39 1 4.3019 5.5129 2.4963 40 1 8.4899 7.6660 1.2654 41 1 7.4882 2.3780 0.3834 42 1 2.2491 -1.6319 -1.1525 43 1 3.2497 -2.3960 -4.2415 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136079771.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:24 Heat of formation + Delta-G solvation = 4.590167 kcal Electronic energy + Delta-G solvation = -25921.904066 eV Core-core repulsion = 22285.713726 eV Total energy + Delta-G solvation = -3636.190340 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.74132 -40.68460 -38.44906 -37.57584 -36.09792 -34.05250 -32.58014 -32.25114 -30.74109 -30.30408 -27.57954 -26.57021 -25.65557 -24.57042 -23.39275 -22.38711 -21.56186 -21.17732 -19.91845 -19.25346 -18.46042 -17.62788 -17.11267 -16.81317 -16.53091 -16.15362 -15.73239 -15.66741 -15.58565 -15.18877 -15.06359 -14.66877 -14.49048 -14.28601 -14.02473 -13.62104 -13.53498 -13.35086 -13.18709 -12.92271 -12.88562 -12.77295 -12.65049 -12.25796 -12.21222 -11.99601 -11.80070 -11.54573 -11.40299 -11.30129 -11.07173 -10.89380 -10.77986 -10.12143 -9.81854 -9.23414 -8.93372 -7.91441 -5.16241 -0.96079 0.00662 0.14401 0.63813 0.90282 1.41661 1.44841 1.49877 1.92229 2.16669 2.56299 2.67958 2.94127 3.43059 3.47277 3.61948 3.84303 3.94770 4.03589 4.06414 4.09369 4.16157 4.39599 4.43228 4.56790 4.67804 4.70860 4.81851 4.85241 4.91145 4.96398 4.99325 5.06887 5.09941 5.13357 5.25682 5.37138 5.43014 5.46142 5.52151 5.63910 5.67366 6.32124 6.43938 6.57499 7.26067 7.37866 8.19083 8.37967 9.32279 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010699 B = 0.003480 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.447642 B = 8043.365430 C = 9315.088971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.162 3.838 3 H 0.044 0.956 4 C -0.118 4.118 5 C 0.146 3.854 6 H 0.048 0.952 7 C -0.151 4.151 8 N -0.693 5.693 9 C 0.554 3.446 10 O -0.583 6.583 11 C -0.127 4.127 12 C -0.065 4.065 13 C -0.069 4.069 14 C 0.087 3.913 15 N -0.494 5.494 16 C 0.085 3.915 17 S 0.133 5.867 18 C -0.218 4.218 19 C -0.022 4.022 20 N -0.732 5.732 21 C -0.226 4.226 22 H 0.069 0.931 23 C -0.077 4.077 24 N -0.969 5.969 25 Si 0.959 3.041 26 H -0.288 1.288 27 H -0.297 1.297 28 H -0.275 1.275 29 H 0.079 0.921 30 H 0.028 0.972 31 H 0.041 0.959 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.036 0.964 37 H 0.413 0.587 38 H 0.172 0.828 39 H 0.169 0.831 40 H 0.249 0.751 41 H 0.128 0.872 42 H 0.370 0.630 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.417 16.397 18.270 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 H 0.062 0.938 4 C -0.156 4.156 5 C 0.041 3.959 6 H 0.066 0.934 7 C -0.210 4.210 8 N -0.345 5.345 9 C 0.341 3.659 10 O -0.464 6.464 11 C -0.134 4.134 12 C -0.087 4.087 13 C -0.090 4.090 14 C -0.035 4.035 15 N -0.207 5.207 16 C -0.219 4.219 17 S 0.388 5.612 18 C -0.337 4.337 19 C -0.045 4.045 20 N -0.372 5.372 21 C -0.358 4.358 22 H 0.087 0.913 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.789 3.211 26 H -0.215 1.215 27 H -0.223 1.223 28 H -0.201 1.201 29 H 0.097 0.903 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.251 0.749 38 H 0.190 0.810 39 H 0.186 0.814 40 H 0.265 0.735 41 H 0.145 0.855 42 H 0.202 0.798 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.643 16.275 17.574 24.856 hybrid contribution -0.522 -0.343 -1.197 1.350 sum 6.121 15.932 16.377 23.654 Atomic orbital electron populations 1.22311 0.97679 1.00856 1.00767 1.20549 0.92670 0.95337 0.86007 0.93771 1.22095 0.92443 1.02433 0.98648 1.20897 0.95861 0.80600 0.98541 0.93413 1.22089 1.00363 1.00314 0.98197 1.45720 1.15636 1.11803 1.61351 1.18395 0.82412 0.87563 0.77489 1.90786 1.52872 1.57480 1.45241 1.19887 0.95859 0.93409 1.04218 1.21083 0.99707 0.91985 0.95907 1.20606 0.93257 0.95877 0.99238 1.19807 0.96811 0.87189 0.99648 1.66296 1.12616 1.20749 1.21043 1.29009 0.92904 1.04511 0.95430 1.84085 1.14091 1.02525 1.60532 1.23925 1.00670 0.99445 1.09649 1.20402 0.95888 0.92608 0.95566 1.42601 1.78213 1.10095 1.06280 1.19472 1.34004 0.93782 0.88549 0.91279 1.25396 1.03595 0.96802 1.01088 1.69784 1.53076 1.10070 1.29085 0.85422 0.77872 0.77326 0.80488 1.21480 1.22311 1.20086 0.90255 0.95310 0.93985 0.90436 0.87108 0.89657 0.91082 0.94473 0.74876 0.81032 0.81381 0.73523 0.85452 0.79846 0.94406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.94 9.49 71.98 0.68 -4.26 16 2 C 0.16 5.76 2.84 44.99 0.13 5.89 16 3 H 0.04 1.58 7.56 -2.39 -0.02 1.57 16 4 C -0.12 -3.18 4.29 30.60 0.13 -3.04 16 5 C 0.15 4.53 2.52 44.99 0.11 4.64 16 6 H 0.05 2.11 7.05 -2.39 -0.02 2.09 16 7 C -0.15 -3.87 9.48 71.98 0.68 -3.19 16 8 N -0.69 -19.14 4.40 -445.64 -1.96 -21.10 16 9 C 0.55 18.90 7.73 86.71 0.67 19.57 16 10 O -0.58 -26.07 16.00 -3.97 -0.06 -26.13 16 11 C -0.13 -3.54 5.87 -20.11 -0.12 -3.65 16 12 C -0.07 -1.28 9.44 22.17 0.21 -1.07 16 13 C -0.07 -1.32 10.03 22.43 0.23 -1.10 16 14 C 0.09 2.02 7.00 39.95 0.28 2.30 16 15 N -0.49 -10.27 10.56 -194.44 -2.05 -12.32 16 16 C 0.08 1.22 12.11 130.79 1.58 2.81 16 17 S 0.13 2.35 23.17 -56.49 -1.31 1.04 16 18 C -0.22 -5.41 6.54 22.90 0.15 -5.27 16 19 C -0.02 -0.62 9.62 22.66 0.22 -0.41 16 20 N -0.73 -36.14 4.49 -322.93 -1.45 -37.59 16 21 C -0.23 -12.72 9.93 84.03 0.83 -11.88 16 22 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 23 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 24 N -0.97 -61.47 13.06 21.65 0.28 -61.19 16 25 Si 0.96 48.42 29.55 68.60 2.03 50.45 16 26 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 27 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 28 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.41 7.83 6.62 -92.71 -0.61 7.21 16 38 H 0.17 2.05 6.38 -2.91 -0.02 2.03 16 39 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.25 1.10 8.06 -2.91 -0.02 1.08 16 41 H 0.13 4.00 7.64 -2.91 -0.02 3.98 16 42 H 0.37 20.01 7.80 -92.71 -0.72 19.29 16 43 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -81.21 375.37 1.44 -79.77 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: -0.29 Total: 29.82 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 6.26 Total: -2.76 kcal Atomic # 7 Polarization: -127.01 SS G_CDS: -5.18 Total: -132.19 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.06 Total: -26.13 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.45 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -1.31 Total: 1.04 kcal Total: -81.21 1.44 -79.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136079771.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.356 kcal (2) G-P(sol) polarization free energy of solvation -81.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds