Wall clock time and date at job start Tue Mar 31 2020 18:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47678 * 2 1 4 4 C 1.53002 * 109.47189 * 239.99487 * 2 1 3 5 5 C 1.53003 * 109.47269 * 175.00147 * 4 2 1 6 6 H 1.09000 * 109.46953 * 305.00936 * 5 4 2 7 7 C 1.52996 * 109.47332 * 185.00423 * 5 4 2 8 8 N 1.46505 * 109.46807 * 65.00478 * 5 4 2 9 9 C 1.36931 * 119.99788 * 205.00000 * 8 5 4 10 10 H 1.08002 * 120.00438 * 0.02562 * 9 8 5 11 11 C 1.38817 * 119.99680 * 179.72358 * 9 8 5 12 12 N 1.31614 * 119.99888 * 0.27479 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27671 * 11 9 8 14 14 H 1.48508 * 109.46872 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47141 * 119.99997 * 13 11 9 16 16 H 1.48498 * 109.47018 * 240.00044 * 13 11 9 17 17 N 1.46508 * 109.46657 * 120.00295 * 2 1 3 18 18 C 1.34771 * 119.99837 * 274.99636 * 17 2 1 19 19 O 1.21592 * 120.00210 * 0.02562 * 18 17 2 20 20 C 1.47588 * 120.00015 * 180.02562 * 18 17 2 21 21 C 1.40183 * 120.12652 * 359.72802 * 20 18 17 22 22 C 1.35763 * 120.61713 * 179.68605 * 21 20 18 23 23 C 1.41240 * 120.62844 * 0.61087 * 22 21 20 24 24 N 1.34420 * 129.47772 * 179.69635 * 23 22 21 25 25 C 1.28052 * 117.91399 * 179.97438 * 24 23 22 26 26 S 1.70647 * 111.51893 * 359.97438 * 25 24 23 27 27 C 1.40144 * 118.74718 * 359.67310 * 23 22 21 28 28 C 1.38918 * 120.41023 * 0.02562 * 27 23 22 29 29 H 1.09010 * 109.46692 * 59.99697 * 1 2 3 30 30 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46944 * 300.00322 * 1 2 3 32 32 H 1.09000 * 109.46766 * 55.00662 * 4 2 1 33 33 H 1.08992 * 109.47398 * 295.00756 * 4 2 1 34 34 H 1.09002 * 109.46807 * 300.00318 * 7 5 4 35 35 H 1.08998 * 109.47019 * 59.99816 * 7 5 4 36 36 H 1.08998 * 109.47099 * 180.02562 * 7 5 4 37 37 H 0.97000 * 119.99792 * 24.99795 * 8 5 4 38 38 H 0.97005 * 119.99715 * 179.97438 * 12 11 9 39 39 H 0.96999 * 120.00119 * 94.99915 * 17 2 1 40 40 H 1.08000 * 119.69554 * 359.97438 * 21 20 18 41 41 H 1.07994 * 119.68225 * 180.27989 * 22 21 20 42 42 H 1.08007 * 124.24454 * 180.02562 * 25 24 23 43 43 H 1.08007 * 120.07324 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2677 7 6 4.0645 -1.2252 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3943 -0.9859 0.2807 10 1 5.9386 -0.1792 -0.1877 11 6 5.9497 -1.6652 1.3564 12 7 5.2861 -2.6479 1.9276 13 14 7.6389 -1.1846 1.9930 14 1 8.1707 -0.0585 1.1840 15 1 7.5318 -0.7668 3.4139 16 1 8.5570 -2.3469 1.8866 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0184 2.3572 19 8 1.8574 1.1613 2.4119 20 6 2.6393 -0.7141 3.5621 21 6 2.9685 -2.0754 3.5034 22 6 3.4283 -2.7237 4.6041 23 6 3.5719 -2.0423 5.8330 24 7 3.9996 -2.5035 7.0210 25 6 4.0433 -1.6821 8.0024 26 16 3.5224 -0.1246 7.5387 27 6 3.2373 -0.6827 5.8929 28 6 2.7731 -0.0223 4.7624 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6055 -0.2618 -2.1369 33 1 1.7516 -1.7715 -1.2056 34 1 3.7722 -2.2743 -2.6698 35 1 3.6264 -0.6888 -3.4656 36 1 5.1509 -1.1487 -2.6696 37 1 3.6646 -2.0586 0.2387 38 1 5.6745 -3.1228 2.6790 39 1 2.2489 -1.6319 1.1527 40 1 2.8597 -2.6126 2.5728 41 1 3.6817 -3.7716 4.5408 42 1 4.3697 -1.9422 8.9985 43 1 2.5164 1.0255 4.8148 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136079772.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:29 Heat of formation + Delta-G solvation = 35.755418 kcal Electronic energy + Delta-G solvation = -27182.324971 eV Core-core repulsion = 23547.486058 eV Total energy + Delta-G solvation = -3634.838913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -40.22884 -39.19986 -37.00707 -36.05663 -34.22762 -32.40979 -31.00266 -30.69027 -29.33433 -28.49006 -26.37758 -25.15811 -23.72325 -23.08456 -21.93091 -20.88322 -20.27374 -19.67789 -18.37221 -17.25018 -16.97189 -16.23005 -15.62650 -15.34869 -14.81668 -14.63804 -14.26314 -14.11846 -13.84092 -13.59148 -13.53591 -13.30250 -12.98720 -12.74384 -12.44856 -12.19357 -12.11762 -11.92515 -11.75860 -11.69935 -11.37775 -11.02759 -10.88217 -10.78424 -10.54193 -10.39413 -10.26296 -9.94629 -9.86570 -9.72370 -9.51677 -9.37665 -9.02252 -8.49613 -8.30762 -7.78381 -6.98513 -5.88165 -3.09496 0.46932 1.44343 1.63240 1.89108 2.35312 3.40030 3.46925 3.48047 3.49765 3.74946 4.19172 4.32804 4.55010 4.92669 5.03822 5.24246 5.29454 5.38812 5.47086 5.51245 5.59644 5.63312 5.64946 5.81947 5.89787 5.92981 5.98160 6.10001 6.20172 6.21724 6.32503 6.35633 6.41145 6.51873 6.55479 6.65059 6.78987 6.81382 7.00094 7.05405 7.13462 7.65901 7.77407 8.12321 8.32578 8.81816 9.44809 9.96373 10.32378 11.34176 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011663 B = 0.005009 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.233096 B = 5588.166907 C = 7173.007586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.150 3.850 3 H 0.084 0.916 4 C -0.134 4.134 5 C 0.168 3.832 6 H 0.049 0.951 7 C -0.163 4.163 8 N -0.715 5.715 9 C -0.222 4.222 10 H 0.067 0.933 11 C -0.007 4.007 12 N -0.924 5.924 13 Si 0.897 3.103 14 H -0.283 1.283 15 H -0.293 1.293 16 H -0.293 1.293 17 N -0.690 5.690 18 C 0.573 3.427 19 O -0.560 6.560 20 C -0.107 4.107 21 C -0.014 4.014 22 C -0.062 4.062 23 C 0.090 3.910 24 N -0.463 5.463 25 C 0.059 3.941 26 S 0.074 5.926 27 C -0.194 4.194 28 C -0.020 4.020 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.035 0.965 36 H 0.052 0.948 37 H 0.376 0.624 38 H 0.255 0.745 39 H 0.404 0.596 40 H 0.148 0.852 41 H 0.135 0.865 42 H 0.199 0.801 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.797 1.048 3.870 9.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.102 0.898 4 C -0.173 4.173 5 C 0.059 3.941 6 H 0.067 0.933 7 C -0.223 4.223 8 N -0.358 5.358 9 C -0.353 4.353 10 H 0.085 0.915 11 C -0.203 4.203 12 N -0.573 5.573 13 Si 0.729 3.271 14 H -0.209 1.209 15 H -0.221 1.221 16 H -0.221 1.221 17 N -0.342 5.342 18 C 0.361 3.639 19 O -0.441 6.441 20 C -0.114 4.114 21 C -0.036 4.036 22 C -0.084 4.084 23 C -0.029 4.029 24 N -0.175 5.175 25 C -0.246 4.246 26 S 0.326 5.674 27 C -0.312 4.312 28 C -0.043 4.043 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.211 0.789 38 H 0.065 0.935 39 H 0.243 0.757 40 H 0.166 0.834 41 H 0.153 0.847 42 H 0.216 0.784 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.725 2.290 4.577 10.115 hybrid contribution 1.344 -0.994 -0.167 1.680 sum -7.381 1.296 4.410 8.695 Atomic orbital electron populations 1.22212 0.96155 1.01706 1.02030 1.20836 0.92571 0.97781 0.84340 0.89759 1.22220 0.97780 1.00643 0.96622 1.20302 0.89708 0.95942 0.88188 0.93343 1.22411 1.01544 1.00346 0.98025 1.42464 1.18674 1.39887 1.34798 1.19243 0.93116 1.12903 1.10054 0.91451 1.24481 0.98292 0.98790 0.98739 1.69490 1.37613 1.24473 1.25738 0.86252 0.84736 0.77465 0.78623 1.20875 1.22052 1.22054 1.45875 1.65429 1.14389 1.08553 1.17856 0.76842 0.86060 0.83174 1.90698 1.52094 1.15664 1.85609 1.19864 1.03455 0.94741 0.93339 1.20841 0.92082 0.92695 0.97959 1.20179 0.99007 1.00537 0.88629 1.19398 1.00623 0.90218 0.92683 1.66145 1.15933 1.36389 0.99054 1.28017 1.01803 0.92511 1.02248 1.83768 1.66199 1.14823 1.02565 1.23492 1.11451 0.97977 0.98310 1.20262 0.95417 0.99533 0.89093 0.92068 0.92745 0.92329 0.90693 0.91693 0.93589 0.94558 0.92865 0.78895 0.93465 0.75709 0.83406 0.84735 0.78417 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.48 37.16 0.35 -1.72 16 2 C 0.15 2.29 2.57 -67.93 -0.17 2.11 16 3 H 0.08 1.48 7.58 -51.93 -0.39 1.08 16 4 C -0.13 -1.88 4.43 -26.73 -0.12 -2.00 16 5 C 0.17 2.96 2.89 -67.93 -0.20 2.77 16 6 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 7 C -0.16 -2.66 9.49 37.16 0.35 -2.31 16 8 N -0.72 -15.18 3.84 -53.42 -0.21 -15.39 16 9 C -0.22 -5.55 9.93 -15.06 -0.15 -5.70 16 10 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 11 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 12 N -0.92 -23.06 10.72 55.49 0.59 -22.46 16 13 Si 0.90 21.96 29.55 -169.99 -5.02 16.94 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 16 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 17 N -0.69 -11.87 3.75 -54.83 -0.21 -12.08 16 18 C 0.57 11.23 7.73 -12.45 -0.10 11.14 16 19 O -0.56 -12.17 16.00 5.28 0.08 -12.09 16 20 C -0.11 -2.05 5.87 -105.00 -0.62 -2.66 16 21 C -0.01 -0.25 7.72 -39.74 -0.31 -0.56 16 22 C -0.06 -1.14 10.03 -39.33 -0.39 -1.53 16 23 C 0.09 1.66 7.00 -84.88 -0.59 1.07 16 24 N -0.46 -7.84 10.56 -12.83 -0.14 -7.98 16 25 C 0.06 0.79 12.11 51.19 0.62 1.41 16 26 S 0.07 1.01 23.17 -107.50 -2.49 -1.48 16 27 C -0.19 -3.42 6.54 -38.61 -0.25 -3.67 16 28 C -0.02 -0.36 9.62 -38.98 -0.37 -0.74 16 29 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.38 8.02 5.70 -40.82 -0.23 7.79 16 38 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 39 H 0.40 6.86 4.53 -40.82 -0.18 6.68 16 40 H 0.15 2.68 5.84 -52.49 -0.31 2.38 16 41 H 0.13 2.31 8.06 -52.49 -0.42 1.89 16 42 H 0.20 1.73 8.06 -52.48 -0.42 1.31 16 43 H 0.14 2.41 7.64 -52.48 -0.40 2.00 16 LS Contribution 366.59 15.07 5.52 5.52 Total: -1.00 -28.77 366.59 -9.61 -38.39 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -5.71 Total: 13.31 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -2.05 Total: -2.68 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.05 Total: -57.90 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.08 Total: -12.09 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.49 Total: -1.48 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.77 -9.61 -38.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136079772.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.144 kcal (2) G-P(sol) polarization free energy of solvation -28.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds