Wall clock time and date at job start Tue Mar 31 2020 18:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47678 * 2 1 4 4 C 1.53002 * 109.47189 * 239.99487 * 2 1 3 5 5 C 1.53003 * 109.47269 * 175.00147 * 4 2 1 6 6 H 1.09000 * 109.46953 * 305.00936 * 5 4 2 7 7 C 1.52996 * 109.47332 * 185.00423 * 5 4 2 8 8 N 1.46505 * 109.46807 * 65.00478 * 5 4 2 9 9 C 1.36931 * 119.99788 * 205.00000 * 8 5 4 10 10 H 1.08002 * 120.00438 * 0.02562 * 9 8 5 11 11 C 1.38817 * 119.99680 * 179.72358 * 9 8 5 12 12 N 1.31614 * 119.99888 * 0.27479 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27671 * 11 9 8 14 14 H 1.48508 * 109.46872 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47141 * 119.99997 * 13 11 9 16 16 H 1.48498 * 109.47018 * 240.00044 * 13 11 9 17 17 N 1.46508 * 109.46657 * 120.00295 * 2 1 3 18 18 C 1.34771 * 119.99837 * 274.99636 * 17 2 1 19 19 O 1.21592 * 120.00210 * 0.02562 * 18 17 2 20 20 C 1.47588 * 120.00015 * 180.02562 * 18 17 2 21 21 C 1.40183 * 120.12652 * 359.72802 * 20 18 17 22 22 C 1.35763 * 120.61713 * 179.68605 * 21 20 18 23 23 C 1.41240 * 120.62844 * 0.61087 * 22 21 20 24 24 N 1.34420 * 129.47772 * 179.69635 * 23 22 21 25 25 C 1.28052 * 117.91399 * 179.97438 * 24 23 22 26 26 S 1.70647 * 111.51893 * 359.97438 * 25 24 23 27 27 C 1.40144 * 118.74718 * 359.67310 * 23 22 21 28 28 C 1.38918 * 120.41023 * 0.02562 * 27 23 22 29 29 H 1.09010 * 109.46692 * 59.99697 * 1 2 3 30 30 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46944 * 300.00322 * 1 2 3 32 32 H 1.09000 * 109.46766 * 55.00662 * 4 2 1 33 33 H 1.08992 * 109.47398 * 295.00756 * 4 2 1 34 34 H 1.09002 * 109.46807 * 300.00318 * 7 5 4 35 35 H 1.08998 * 109.47019 * 59.99816 * 7 5 4 36 36 H 1.08998 * 109.47099 * 180.02562 * 7 5 4 37 37 H 0.97000 * 119.99792 * 24.99795 * 8 5 4 38 38 H 0.97005 * 119.99715 * 179.97438 * 12 11 9 39 39 H 0.96999 * 120.00119 * 94.99915 * 17 2 1 40 40 H 1.08000 * 119.69554 * 359.97438 * 21 20 18 41 41 H 1.07994 * 119.68225 * 180.27989 * 22 21 20 42 42 H 1.08007 * 124.24454 * 180.02562 * 25 24 23 43 43 H 1.08007 * 120.07324 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2677 7 6 4.0645 -1.2252 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3943 -0.9859 0.2807 10 1 5.9386 -0.1792 -0.1877 11 6 5.9497 -1.6652 1.3564 12 7 5.2861 -2.6479 1.9276 13 14 7.6389 -1.1846 1.9930 14 1 8.1707 -0.0585 1.1840 15 1 7.5318 -0.7668 3.4139 16 1 8.5570 -2.3469 1.8866 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0184 2.3572 19 8 1.8574 1.1613 2.4119 20 6 2.6393 -0.7141 3.5621 21 6 2.9685 -2.0754 3.5034 22 6 3.4283 -2.7237 4.6041 23 6 3.5719 -2.0423 5.8330 24 7 3.9996 -2.5035 7.0210 25 6 4.0433 -1.6821 8.0024 26 16 3.5224 -0.1246 7.5387 27 6 3.2373 -0.6827 5.8929 28 6 2.7731 -0.0223 4.7624 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6055 -0.2618 -2.1369 33 1 1.7516 -1.7715 -1.2056 34 1 3.7722 -2.2743 -2.6698 35 1 3.6264 -0.6888 -3.4656 36 1 5.1509 -1.1487 -2.6696 37 1 3.6646 -2.0586 0.2387 38 1 5.6745 -3.1228 2.6790 39 1 2.2489 -1.6319 1.1527 40 1 2.8597 -2.6126 2.5728 41 1 3.6817 -3.7716 4.5408 42 1 4.3697 -1.9422 8.9985 43 1 2.5164 1.0255 4.8148 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136079772.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:28 Heat of formation + Delta-G solvation = 19.269957 kcal Electronic energy + Delta-G solvation = -27183.039834 eV Core-core repulsion = 23547.486058 eV Total energy + Delta-G solvation = -3635.553776 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.59011 -40.58481 -38.41705 -37.45576 -35.77770 -34.06764 -32.43535 -32.08520 -30.75951 -30.00345 -27.57531 -26.42139 -25.53466 -24.43797 -23.27255 -22.19426 -21.67168 -21.11323 -19.67618 -19.07622 -18.32559 -17.56939 -16.95804 -16.77903 -16.44617 -16.03064 -15.64608 -15.59518 -15.48165 -15.13274 -14.91955 -14.54014 -14.33371 -14.17385 -13.84904 -13.56103 -13.42705 -13.29936 -13.17218 -12.92775 -12.79162 -12.70713 -12.59799 -12.26318 -12.13263 -11.87370 -11.68309 -11.58100 -11.38551 -11.14882 -10.91976 -10.84655 -10.70267 -9.94555 -9.65289 -9.06686 -8.75373 -7.83362 -5.01264 -0.81742 0.21683 0.25656 0.69301 1.04987 1.39738 1.46834 1.48498 2.04729 2.38292 2.59658 2.87624 3.06961 3.52133 3.58936 3.75198 3.91229 4.06457 4.16630 4.20232 4.22419 4.26674 4.40297 4.54733 4.60136 4.71657 4.82374 4.86721 4.90645 4.94235 5.03771 5.10905 5.16390 5.18605 5.24767 5.38417 5.40529 5.45050 5.63879 5.64803 5.68774 5.78015 6.40287 6.55092 6.68298 7.34562 7.50344 8.20201 8.48705 9.36475 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011663 B = 0.005009 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.233096 B = 5588.166907 C = 7173.007586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.144 3.856 3 H 0.058 0.942 4 C -0.120 4.120 5 C 0.161 3.839 6 H 0.028 0.972 7 C -0.153 4.153 8 N -0.718 5.718 9 C -0.223 4.223 10 H 0.052 0.948 11 C -0.040 4.040 12 N -0.921 5.921 13 Si 0.928 3.072 14 H -0.284 1.284 15 H -0.311 1.311 16 H -0.297 1.297 17 N -0.682 5.682 18 C 0.567 3.433 19 O -0.591 6.591 20 C -0.129 4.129 21 C -0.010 4.010 22 C -0.078 4.078 23 C 0.084 3.916 24 N -0.498 5.498 25 C 0.078 3.922 26 S 0.132 5.868 27 C -0.223 4.223 28 C -0.025 4.025 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.027 0.973 37 H 0.376 0.624 38 H 0.248 0.752 39 H 0.405 0.595 40 H 0.146 0.854 41 H 0.138 0.862 42 H 0.248 0.752 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.817 0.805 4.244 10.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 H 0.077 0.923 4 C -0.158 4.158 5 C 0.053 3.947 6 H 0.046 0.954 7 C -0.213 4.213 8 N -0.361 5.361 9 C -0.356 4.356 10 H 0.070 0.930 11 C -0.235 4.235 12 N -0.571 5.571 13 Si 0.762 3.238 14 H -0.210 1.210 15 H -0.240 1.240 16 H -0.225 1.225 17 N -0.333 5.333 18 C 0.355 3.645 19 O -0.474 6.474 20 C -0.135 4.135 21 C -0.032 4.032 22 C -0.099 4.099 23 C -0.037 4.037 24 N -0.212 5.212 25 C -0.226 4.226 26 S 0.385 5.615 27 C -0.342 4.342 28 C -0.048 4.048 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.128 0.872 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.210 0.790 38 H 0.058 0.942 39 H 0.244 0.756 40 H 0.163 0.837 41 H 0.156 0.844 42 H 0.264 0.736 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.767 2.050 4.918 11.126 hybrid contribution 1.665 -0.840 -0.126 1.869 sum -8.101 1.210 4.792 9.490 Atomic orbital electron populations 1.22116 0.93677 1.02851 1.02408 1.21013 0.94455 0.96386 0.84115 0.92341 1.22140 0.94797 1.01683 0.97203 1.20498 0.92156 0.94427 0.87627 0.95354 1.22265 1.00014 1.00873 0.98173 1.42479 1.17611 1.40137 1.35863 1.19218 0.94440 1.12134 1.09796 0.92996 1.24776 0.99385 0.99706 0.99608 1.69533 1.37406 1.24566 1.25613 0.85765 0.83976 0.76925 0.77146 1.20986 1.23987 1.22473 1.45930 1.64488 1.14333 1.08566 1.18044 0.76673 0.85809 0.83972 1.90662 1.53764 1.16803 1.86164 1.19961 1.04717 0.95209 0.93660 1.20752 0.92110 0.92359 0.97986 1.20278 0.99660 1.00888 0.89045 1.19632 1.00101 0.90572 0.93350 1.66228 1.18258 1.37505 0.99197 1.28954 0.98469 0.91914 1.03230 1.83596 1.64821 1.14142 0.98933 1.23831 1.11570 0.98327 1.00429 1.20351 0.95422 0.99572 0.89501 0.89432 0.91161 0.94218 0.87191 0.90290 0.93214 0.91346 0.95358 0.78970 0.94199 0.75554 0.83651 0.84375 0.73572 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.48 71.98 0.68 -2.91 16 2 C 0.14 4.29 2.57 44.99 0.12 4.41 16 3 H 0.06 2.06 7.58 -2.39 -0.02 2.04 16 4 C -0.12 -3.08 4.43 30.60 0.14 -2.95 16 5 C 0.16 5.53 2.89 44.99 0.13 5.66 16 6 H 0.03 1.09 8.08 -2.39 -0.02 1.07 16 7 C -0.15 -4.74 9.49 71.98 0.68 -4.05 16 8 N -0.72 -30.53 3.84 -322.93 -1.24 -31.78 16 9 C -0.22 -11.34 9.93 84.04 0.83 -10.51 16 10 H 0.05 2.76 7.83 -2.91 -0.02 2.74 16 11 C -0.04 -2.07 5.50 84.86 0.47 -1.60 16 12 N -0.92 -46.61 10.72 21.65 0.23 -46.37 16 13 Si 0.93 45.82 29.55 68.60 2.03 47.84 16 14 H -0.28 -13.91 7.11 99.48 0.71 -13.21 16 15 H -0.31 -16.18 7.11 99.48 0.71 -15.47 16 16 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 17 N -0.68 -23.66 3.75 -445.64 -1.67 -25.33 16 18 C 0.57 22.92 7.73 86.71 0.67 23.59 16 19 O -0.59 -26.58 16.00 -4.01 -0.06 -26.65 16 20 C -0.13 -5.10 5.87 -20.11 -0.12 -5.21 16 21 C -0.01 -0.38 7.72 22.17 0.17 -0.21 16 22 C -0.08 -2.89 10.03 22.43 0.23 -2.67 16 23 C 0.08 3.06 7.00 39.95 0.28 3.33 16 24 N -0.50 -16.14 10.56 -194.44 -2.05 -18.19 16 25 C 0.08 1.83 12.11 130.79 1.58 3.41 16 26 S 0.13 3.29 23.17 -56.49 -1.31 1.98 16 27 C -0.22 -7.79 6.54 22.90 0.15 -7.64 16 28 C -0.03 -0.95 9.62 22.66 0.22 -0.73 16 29 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.38 15.98 5.70 -92.71 -0.53 15.46 16 38 H 0.25 12.80 8.31 -92.70 -0.77 12.03 16 39 H 0.41 13.83 4.53 -92.71 -0.42 13.41 16 40 H 0.15 5.44 5.84 -2.91 -0.02 5.43 16 41 H 0.14 4.89 8.06 -2.91 -0.02 4.86 16 42 H 0.25 3.08 8.06 -2.91 -0.02 3.06 16 43 H 0.14 4.96 7.64 -2.91 -0.02 4.94 16 Total: -1.00 -64.31 366.59 2.25 -62.07 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: 0.10 Total: 34.50 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 6.23 Total: 1.93 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -4.73 Total: -121.67 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.06 Total: -26.65 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -1.31 Total: 1.98 kcal Total: -64.31 2.25 -62.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136079772.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.337 kcal (2) G-P(sol) polarization free energy of solvation -64.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds