Wall clock time and date at job start Tue Mar 31 2020 19:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.46905 * 2 1 4 4 C 1.36939 * 120.00193 * 275.73154 * 3 2 1 5 5 H 1.08001 * 119.99702 * 33.27179 * 4 3 2 6 6 C 1.38815 * 120.00407 * 213.26671 * 4 3 2 7 7 N 1.31619 * 119.99239 * 17.27873 * 6 4 3 8 8 Si 1.86796 * 120.00182 * 197.27780 * 6 4 3 9 9 H 1.48503 * 109.47092 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46949 * 120.00104 * 8 6 4 11 11 H 1.48503 * 109.46988 * 240.00184 * 8 6 4 12 12 C 1.46503 * 120.00212 * 95.73478 * 3 2 1 13 13 H 1.08991 * 109.47334 * 180.08951 * 12 3 2 14 14 C 1.52998 * 109.46851 * 60.08270 * 12 3 2 15 15 C 1.53006 * 109.46986 * 300.09025 * 12 3 2 16 16 N 1.46508 * 109.46905 * 304.99489 * 15 12 3 17 17 C 1.34767 * 119.99965 * 180.02562 * 16 15 12 18 18 O 1.21618 * 120.00082 * 0.02562 * 17 16 15 19 19 C 1.47394 * 119.99909 * 180.02562 * 17 16 15 20 20 C 1.38867 * 120.01994 * 0.02562 * 19 17 16 21 21 C 1.38240 * 120.46157 * 179.97438 * 20 19 17 22 22 C 1.37955 * 120.27380 * 0.04896 * 21 20 19 23 23 C 1.39183 * 120.45287 * 359.94845 * 22 21 20 24 24 S 1.76145 * 131.64087 * 180.02562 * 23 22 21 25 25 C 1.70679 * 90.71717 * 179.97438 * 24 23 22 26 26 N 1.28156 * 111.37239 * 0.02562 * 25 24 23 27 27 C 1.33636 * 118.02468 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.46984 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47207 * 299.99558 * 1 2 3 30 30 H 1.08998 * 109.47469 * 60.00061 * 1 2 3 31 31 H 1.09004 * 109.46838 * 240.00212 * 2 1 3 32 32 H 1.08996 * 109.47242 * 120.00431 * 2 1 3 33 33 H 0.97006 * 119.99666 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47046 * 60.00976 * 14 12 3 35 35 H 1.09002 * 109.46796 * 179.97438 * 14 12 3 36 36 H 1.08991 * 109.47708 * 300.00452 * 14 12 3 37 37 H 1.08996 * 109.47015 * 185.00009 * 15 12 3 38 38 H 1.09003 * 109.47061 * 64.99427 * 15 12 3 39 39 H 0.97003 * 119.99731 * 0.02562 * 16 15 12 40 40 H 1.08000 * 119.76794 * 359.97438 * 20 19 17 41 41 H 1.07992 * 119.86058 * 180.02562 * 21 20 19 42 42 H 1.07997 * 119.76966 * 179.97438 * 22 21 20 43 43 H 1.08001 * 124.31169 * 179.73301 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1348 2.0662 -1.1800 5 1 1.4369 1.8810 -1.9831 6 6 3.1500 2.9988 -1.3439 7 7 4.1870 2.9918 -0.5334 8 14 3.0442 4.2634 -2.7146 9 1 1.7878 4.0601 -3.4798 10 1 3.0519 5.6285 -2.1302 11 1 4.2084 4.1071 -3.6231 12 6 2.3820 2.0296 1.2624 13 1 2.7188 3.0470 1.0644 14 6 3.5077 1.2413 1.9348 15 6 1.1630 2.0667 2.1864 16 7 0.0465 2.7173 1.4960 17 6 -1.1387 2.8637 2.1206 18 8 -1.2812 2.4563 3.2576 19 6 -2.2620 3.5177 1.4258 20 6 -2.0998 3.9827 0.1274 21 6 -3.1474 4.5970 -0.5331 22 6 -4.3667 4.7555 0.0927 23 6 -4.5566 4.2988 1.3936 24 16 -5.9604 4.3437 2.4566 25 6 -5.0799 3.5555 3.6881 26 7 -3.8799 3.3030 3.3158 27 6 -3.5133 3.6728 2.0851 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.8966 3.6432 -0.6481 34 1 4.3762 1.2149 1.2766 35 1 3.7786 1.7240 2.8738 36 1 3.1708 0.2238 2.1328 37 1 1.4080 2.6267 3.0888 38 1 0.8802 1.0490 2.4558 39 1 0.1604 3.0426 0.5892 40 1 -1.1486 3.8635 -0.3700 41 1 -3.0107 4.9545 -1.5429 42 1 -5.1794 5.2370 -0.4308 43 1 -5.4814 3.3059 4.6592 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153349892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:07 Heat of formation + Delta-G solvation = 50.697985 kcal Electronic energy + Delta-G solvation = -26903.148297 eV Core-core repulsion = 23268.957342 eV Total energy + Delta-G solvation = -3634.190955 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.70657 -38.86205 -36.95933 -36.74011 -33.63377 -31.95223 -31.68897 -30.64229 -29.99276 -28.17310 -25.91554 -24.92233 -23.96644 -23.63532 -21.80247 -21.40380 -20.36161 -19.33842 -18.48042 -17.11233 -16.77987 -16.42755 -15.91996 -15.22699 -15.13022 -15.00476 -14.68370 -14.59306 -13.89430 -13.81551 -13.62422 -13.15138 -12.70610 -12.69174 -12.35632 -12.18819 -12.12367 -11.89748 -11.78829 -11.49827 -11.33679 -11.08216 -10.95630 -10.84156 -10.66842 -10.29785 -10.19013 -10.08792 -9.73606 -9.63839 -9.43433 -9.27460 -8.89012 -8.54439 -8.42137 -8.16111 -6.68612 -5.90698 -3.39406 0.13444 0.77013 1.10170 1.54596 2.30179 3.05201 3.27274 3.36361 3.38092 3.67860 3.90824 3.93572 4.38687 4.51823 4.77253 4.90283 5.05978 5.09377 5.24442 5.36791 5.38848 5.63305 5.88295 5.93468 5.99329 6.07211 6.14067 6.21279 6.27884 6.39791 6.45721 6.50606 6.56461 6.63730 6.69699 6.84285 6.91985 7.09132 7.17467 7.48180 7.56745 7.58544 7.74876 8.17258 8.40936 8.77289 9.13804 9.75489 10.33255 11.15840 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014994 B = 0.003792 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.959407 B = 7382.406691 C = 8448.677065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.141 3.859 3 N -0.583 5.583 4 C -0.264 4.264 5 H 0.065 0.935 6 C 0.012 3.988 7 N -0.889 5.889 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.177 3.823 13 H 0.100 0.900 14 C -0.144 4.144 15 C 0.103 3.897 16 N -0.697 5.697 17 C 0.541 3.459 18 O -0.525 6.525 19 C -0.070 4.070 20 C -0.070 4.070 21 C -0.104 4.104 22 C -0.055 4.055 23 C -0.189 4.189 24 S 0.078 5.922 25 C 0.067 3.933 26 N -0.432 5.432 27 C 0.126 3.874 28 H 0.032 0.968 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.254 0.746 34 H 0.078 0.922 35 H 0.033 0.967 36 H 0.030 0.970 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.408 0.592 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.133 0.867 43 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.680 3.587 2.605 17.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.305 5.305 4 C -0.394 4.394 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.531 5.531 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.217 1.217 12 C 0.069 3.931 13 H 0.118 0.882 14 C -0.204 4.204 15 C -0.022 4.022 16 N -0.349 5.349 17 C 0.326 3.674 18 O -0.403 6.403 19 C -0.077 4.077 20 C -0.091 4.091 21 C -0.125 4.125 22 C -0.078 4.078 23 C -0.308 4.308 24 S 0.331 5.669 25 C -0.238 4.238 26 N -0.142 5.142 27 C 0.003 3.997 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.246 0.754 40 H 0.165 0.835 41 H 0.161 0.839 42 H 0.151 0.849 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -17.257 3.442 3.820 18.007 hybrid contribution 0.854 0.654 -1.446 1.803 sum -16.403 4.096 2.374 17.073 Atomic orbital electron populations 1.22455 1.00021 0.99035 1.01534 1.20750 0.91639 0.87424 0.98723 1.43903 1.75983 1.08315 1.02280 1.19131 1.08651 1.18194 0.93386 0.91777 1.25163 0.94538 1.01375 0.97757 1.70018 1.07837 1.35843 1.39447 0.86378 0.77709 0.81658 0.81935 1.20123 1.21500 1.21684 1.20499 0.88889 0.99513 0.84183 0.88240 1.22018 1.01090 0.97987 0.99261 1.22186 0.87884 0.96323 0.95803 1.45919 1.10759 1.59229 1.18990 1.17957 0.82643 0.80422 0.86339 1.90810 1.82774 1.49216 1.17453 1.19795 0.92182 1.01420 0.94258 1.21472 1.00230 0.94769 0.92671 1.21126 0.91981 0.98892 1.00540 1.20452 0.98082 0.98050 0.91194 1.23844 0.97350 1.08623 1.00952 1.83882 1.14461 1.60468 1.08111 1.28387 0.91784 0.99556 1.04041 1.65939 1.15135 1.18600 1.14554 1.18774 0.93895 0.98307 0.88727 0.94890 0.92925 0.93496 0.94127 0.94505 0.93585 0.90289 0.94820 0.95122 0.92841 0.92715 0.75382 0.83482 0.83905 0.84875 0.77988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 9.87 37.16 0.37 -2.76 16 2 C 0.14 2.84 5.67 -4.04 -0.02 2.82 16 3 N -0.58 -12.90 1.85 -165.66 -0.31 -13.21 16 4 C -0.26 -6.36 9.26 -15.06 -0.14 -6.50 16 5 H 0.06 1.55 7.89 -52.49 -0.41 1.14 16 6 C 0.01 0.30 4.85 -17.43 -0.08 0.21 16 7 N -0.89 -23.17 10.60 55.49 0.59 -22.58 16 8 Si 0.89 19.62 29.59 -169.99 -5.03 14.59 16 9 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 10 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.18 3.76 1.92 -67.93 -0.13 3.63 16 13 H 0.10 2.40 6.04 -51.93 -0.31 2.08 16 14 C -0.14 -2.95 9.05 37.16 0.34 -2.61 16 15 C 0.10 2.03 4.34 -4.03 -0.02 2.01 16 16 N -0.70 -13.01 3.93 -61.39 -0.24 -13.26 16 17 C 0.54 10.43 7.52 -12.54 -0.09 10.33 16 18 O -0.53 -11.74 15.78 5.26 0.08 -11.66 16 19 C -0.07 -1.16 5.92 -104.38 -0.62 -1.78 16 20 C -0.07 -0.95 9.50 -39.35 -0.37 -1.32 16 21 C -0.10 -1.12 10.02 -39.68 -0.40 -1.52 16 22 C -0.06 -0.58 10.05 -39.33 -0.40 -0.98 16 23 C -0.19 -2.42 6.55 -38.59 -0.25 -2.67 16 24 S 0.08 0.77 23.18 -107.50 -2.49 -1.72 16 25 C 0.07 0.77 12.12 51.23 0.62 1.40 16 26 N -0.43 -7.06 9.43 -12.74 -0.12 -7.18 16 27 C 0.13 2.03 6.73 -84.89 -0.57 1.45 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 1.01 4.99 -51.93 -0.26 0.75 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 32 H 0.04 0.72 6.45 -51.93 -0.33 0.39 16 33 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 34 H 0.08 1.83 7.39 -51.93 -0.38 1.44 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.03 0.58 6.67 -51.93 -0.35 0.24 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.05 1.11 7.05 -51.93 -0.37 0.74 16 39 H 0.41 7.51 5.89 -40.82 -0.24 7.27 16 40 H 0.15 1.93 6.34 -52.49 -0.33 1.60 16 41 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.20 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 360.89 15.07 5.44 5.44 Total: -1.00 -30.22 360.89 -9.36 -39.58 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.51 Total: 8.30 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -1.77 Total: 1.70 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.08 Total: -56.22 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.08 Total: -11.66 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.49 Total: -1.72 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.22 -9.36 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153349892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.279 kcal (2) G-P(sol) polarization free energy of solvation -30.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds