Wall clock time and date at job start Tue Mar 31 2020 19:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.46905 * 2 1 4 4 C 1.36939 * 120.00193 * 275.73154 * 3 2 1 5 5 H 1.08001 * 119.99702 * 33.27179 * 4 3 2 6 6 C 1.38815 * 120.00407 * 213.26671 * 4 3 2 7 7 N 1.31619 * 119.99239 * 17.27873 * 6 4 3 8 8 Si 1.86796 * 120.00182 * 197.27780 * 6 4 3 9 9 H 1.48503 * 109.47092 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46949 * 120.00104 * 8 6 4 11 11 H 1.48503 * 109.46988 * 240.00184 * 8 6 4 12 12 C 1.46503 * 120.00212 * 95.73478 * 3 2 1 13 13 H 1.08991 * 109.47334 * 180.08951 * 12 3 2 14 14 C 1.52998 * 109.46851 * 60.08270 * 12 3 2 15 15 C 1.53006 * 109.46986 * 300.09025 * 12 3 2 16 16 N 1.46508 * 109.46905 * 304.99489 * 15 12 3 17 17 C 1.34767 * 119.99965 * 180.02562 * 16 15 12 18 18 O 1.21618 * 120.00082 * 0.02562 * 17 16 15 19 19 C 1.47394 * 119.99909 * 180.02562 * 17 16 15 20 20 C 1.38867 * 120.01994 * 0.02562 * 19 17 16 21 21 C 1.38240 * 120.46157 * 179.97438 * 20 19 17 22 22 C 1.37955 * 120.27380 * 0.04896 * 21 20 19 23 23 C 1.39183 * 120.45287 * 359.94845 * 22 21 20 24 24 S 1.76145 * 131.64087 * 180.02562 * 23 22 21 25 25 C 1.70679 * 90.71717 * 179.97438 * 24 23 22 26 26 N 1.28156 * 111.37239 * 0.02562 * 25 24 23 27 27 C 1.33636 * 118.02468 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.46984 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47207 * 299.99558 * 1 2 3 30 30 H 1.08998 * 109.47469 * 60.00061 * 1 2 3 31 31 H 1.09004 * 109.46838 * 240.00212 * 2 1 3 32 32 H 1.08996 * 109.47242 * 120.00431 * 2 1 3 33 33 H 0.97006 * 119.99666 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47046 * 60.00976 * 14 12 3 35 35 H 1.09002 * 109.46796 * 179.97438 * 14 12 3 36 36 H 1.08991 * 109.47708 * 300.00452 * 14 12 3 37 37 H 1.08996 * 109.47015 * 185.00009 * 15 12 3 38 38 H 1.09003 * 109.47061 * 64.99427 * 15 12 3 39 39 H 0.97003 * 119.99731 * 0.02562 * 16 15 12 40 40 H 1.08000 * 119.76794 * 359.97438 * 20 19 17 41 41 H 1.07992 * 119.86058 * 180.02562 * 21 20 19 42 42 H 1.07997 * 119.76966 * 179.97438 * 22 21 20 43 43 H 1.08001 * 124.31169 * 179.73301 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1348 2.0662 -1.1800 5 1 1.4369 1.8810 -1.9831 6 6 3.1500 2.9988 -1.3439 7 7 4.1870 2.9918 -0.5334 8 14 3.0442 4.2634 -2.7146 9 1 1.7878 4.0601 -3.4798 10 1 3.0519 5.6285 -2.1302 11 1 4.2084 4.1071 -3.6231 12 6 2.3820 2.0296 1.2624 13 1 2.7188 3.0470 1.0644 14 6 3.5077 1.2413 1.9348 15 6 1.1630 2.0667 2.1864 16 7 0.0465 2.7173 1.4960 17 6 -1.1387 2.8637 2.1206 18 8 -1.2812 2.4563 3.2576 19 6 -2.2620 3.5177 1.4258 20 6 -2.0998 3.9827 0.1274 21 6 -3.1474 4.5970 -0.5331 22 6 -4.3667 4.7555 0.0927 23 6 -4.5566 4.2988 1.3936 24 16 -5.9604 4.3437 2.4566 25 6 -5.0799 3.5555 3.6881 26 7 -3.8799 3.3030 3.3158 27 6 -3.5133 3.6728 2.0851 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.8966 3.6432 -0.6481 34 1 4.3762 1.2149 1.2766 35 1 3.7786 1.7240 2.8738 36 1 3.1708 0.2238 2.1328 37 1 1.4080 2.6267 3.0888 38 1 0.8802 1.0490 2.4558 39 1 0.1604 3.0426 0.5892 40 1 -1.1486 3.8635 -0.3700 41 1 -3.0107 4.9545 -1.5429 42 1 -5.1794 5.2370 -0.4308 43 1 -5.4814 3.3059 4.6592 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153349892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:06 Heat of formation + Delta-G solvation = 33.272037 kcal Electronic energy + Delta-G solvation = -26903.903943 eV Core-core repulsion = 23268.957342 eV Total energy + Delta-G solvation = -3634.946601 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.76494 -40.26608 -38.51816 -37.83509 -35.23299 -33.72611 -33.07147 -31.99717 -30.92900 -29.91799 -27.34661 -25.91605 -25.77224 -24.78359 -23.38727 -22.44304 -21.63612 -21.02696 -19.69453 -18.67418 -18.05618 -17.45475 -17.21786 -16.58662 -16.47398 -16.30215 -16.00522 -15.92531 -15.37955 -15.30111 -14.78593 -14.52256 -14.32192 -13.99051 -13.78156 -13.63806 -13.44163 -13.20367 -13.07842 -12.89247 -12.80624 -12.68595 -12.54780 -12.38564 -12.24833 -11.99301 -11.84705 -11.36401 -11.16875 -11.15513 -10.96724 -10.44599 -10.41662 -9.94270 -9.80242 -9.11680 -8.51785 -7.79375 -5.30103 -0.82590 -0.19834 0.27221 0.65360 1.39064 1.51799 1.57119 1.64473 1.82709 2.29508 2.57524 2.76526 3.03699 3.35343 3.53776 3.66557 3.84469 3.94075 4.18692 4.19953 4.23911 4.44383 4.48681 4.55915 4.61992 4.68965 4.79743 4.87869 4.93348 4.96480 5.01327 5.04873 5.05987 5.21292 5.22135 5.31519 5.50286 5.57926 5.59682 5.70355 5.78111 5.87622 6.52151 6.63902 6.73105 7.25400 7.31630 7.93771 8.47817 9.25050 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014994 B = 0.003792 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.959407 B = 7382.406691 C = 8448.677065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 N -0.591 5.591 4 C -0.262 4.262 5 H 0.065 0.935 6 C -0.032 4.032 7 N -0.916 5.916 8 Si 0.951 3.049 9 H -0.260 1.260 10 H -0.293 1.293 11 H -0.303 1.303 12 C 0.185 3.815 13 H 0.072 0.928 14 C -0.135 4.135 15 C 0.117 3.883 16 N -0.694 5.694 17 C 0.542 3.458 18 O -0.566 6.566 19 C -0.113 4.113 20 C -0.065 4.065 21 C -0.103 4.103 22 C -0.036 4.036 23 C -0.214 4.214 24 S 0.157 5.843 25 C 0.065 3.935 26 N -0.496 5.496 27 C 0.101 3.899 28 H 0.052 0.948 29 H 0.040 0.960 30 H 0.044 0.956 31 H 0.034 0.966 32 H 0.041 0.959 33 H 0.248 0.752 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.041 0.959 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.410 0.590 40 H 0.144 0.856 41 H 0.179 0.821 42 H 0.174 0.826 43 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.821 4.566 1.292 20.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.015 3.985 3 N -0.313 5.313 4 C -0.392 4.392 5 H 0.083 0.917 6 C -0.229 4.229 7 N -0.560 5.560 8 Si 0.780 3.220 9 H -0.184 1.184 10 H -0.220 1.220 11 H -0.230 1.230 12 C 0.078 3.922 13 H 0.090 0.910 14 C -0.195 4.195 15 C -0.009 4.009 16 N -0.345 5.345 17 C 0.329 3.671 18 O -0.447 6.447 19 C -0.120 4.120 20 C -0.086 4.086 21 C -0.125 4.125 22 C -0.059 4.059 23 C -0.333 4.333 24 S 0.411 5.589 25 C -0.238 4.238 26 N -0.208 5.208 27 C -0.022 4.022 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.248 0.752 40 H 0.162 0.838 41 H 0.196 0.804 42 H 0.191 0.809 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -20.441 4.418 2.492 21.061 hybrid contribution 1.676 0.350 -1.016 1.991 sum -18.765 4.768 1.476 19.418 Atomic orbital electron populations 1.22266 0.98330 1.00121 1.00812 1.20808 0.92779 0.86334 0.98583 1.44018 1.76106 1.09123 1.02072 1.19316 1.08079 1.17985 0.93814 0.91704 1.25754 0.94410 1.03035 0.99743 1.70158 1.08418 1.36349 1.41061 0.85464 0.77629 0.79325 0.79544 1.18387 1.21952 1.23027 1.20318 0.89589 0.98036 0.84306 0.91004 1.21885 0.99661 0.98731 0.99183 1.21910 0.87635 0.96079 0.95282 1.45839 1.10614 1.59167 1.18880 1.18440 0.83120 0.79609 0.85922 1.90762 1.83499 1.51183 1.19235 1.19657 0.91891 1.04634 0.95772 1.21572 1.01099 0.94315 0.91629 1.21511 0.91150 0.97988 1.01819 1.20982 0.98910 0.95815 0.90151 1.24281 0.98132 1.08655 1.02223 1.83539 1.11498 1.58361 1.05456 1.28999 0.91044 0.98020 1.05732 1.65954 1.17631 1.21486 1.15721 1.18963 0.94565 0.99262 0.89363 0.92873 0.94046 0.93714 0.94765 0.94076 0.94310 0.93054 0.93327 0.94010 0.93170 0.93276 0.75238 0.83813 0.80351 0.80868 0.74936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.60 9.87 71.98 0.71 -4.89 16 2 C 0.14 5.64 5.67 86.38 0.49 6.13 16 3 N -0.59 -26.43 1.85 -678.04 -1.25 -27.68 16 4 C -0.26 -12.65 9.26 84.03 0.78 -11.87 16 5 H 0.07 3.09 7.89 -2.91 -0.02 3.07 16 6 C -0.03 -1.59 4.85 84.86 0.41 -1.18 16 7 N -0.92 -48.84 10.60 21.65 0.23 -48.61 16 8 Si 0.95 40.44 29.59 68.60 2.03 42.47 16 9 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 10 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 12 C 0.18 8.07 1.92 44.99 0.09 8.15 16 13 H 0.07 3.58 6.04 -2.39 -0.01 3.57 16 14 C -0.14 -5.64 9.05 71.98 0.65 -4.99 16 15 C 0.12 4.72 4.34 86.38 0.37 5.10 16 16 N -0.69 -26.77 3.93 -466.38 -1.83 -28.61 16 17 C 0.54 21.73 7.52 86.66 0.65 22.38 16 18 O -0.57 -26.59 15.78 -4.09 -0.06 -26.66 16 19 C -0.11 -3.82 5.92 -19.71 -0.12 -3.94 16 20 C -0.06 -1.71 9.50 22.42 0.21 -1.50 16 21 C -0.10 -1.91 10.02 22.20 0.22 -1.69 16 22 C -0.04 -0.63 10.05 22.43 0.23 -0.41 16 23 C -0.21 -4.99 6.55 22.91 0.15 -4.84 16 24 S 0.16 2.62 23.18 -56.49 -1.31 1.31 16 25 C 0.06 1.40 12.12 130.78 1.58 2.99 16 26 N -0.50 -16.30 9.43 -194.19 -1.83 -18.13 16 27 C 0.10 3.25 6.73 40.29 0.27 3.52 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.04 1.58 4.99 -2.39 -0.01 1.57 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.03 1.41 8.09 -2.39 -0.02 1.39 16 32 H 0.04 1.60 6.45 -2.39 -0.02 1.59 16 33 H 0.25 13.06 8.31 -92.70 -0.77 12.29 16 34 H 0.05 2.43 7.39 -2.39 -0.02 2.41 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.04 1.61 6.67 -2.39 -0.02 1.59 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.05 2.04 7.05 -2.39 -0.02 2.02 16 39 H 0.41 15.47 5.89 -92.71 -0.55 14.93 16 40 H 0.14 3.74 6.34 -2.91 -0.02 3.72 16 41 H 0.18 1.98 8.06 -2.91 -0.02 1.95 16 42 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 43 H 0.23 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -68.47 360.89 3.18 -65.29 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.50 Total: 27.65 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 6.70 Total: 12.97 kcal Atomic # 7 Polarization: -118.34 SS G_CDS: -4.69 Total: -123.03 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.06 Total: -26.66 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -1.31 Total: 1.31 kcal Total: -68.47 3.18 -65.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153349892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.566 kcal (2) G-P(sol) polarization free energy of solvation -68.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds