Wall clock time and date at job start Tue Mar 31 2020 19:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47367 * 2 1 4 4 C 1.36934 * 120.00421 * 275.73782 * 3 2 1 5 5 H 1.07997 * 119.99780 * 33.26824 * 4 3 2 6 6 C 1.38809 * 120.00183 * 213.27074 * 4 3 2 7 7 N 1.31618 * 120.00192 * 17.25879 * 6 4 3 8 8 Si 1.86799 * 119.99803 * 197.26724 * 6 4 3 9 9 H 1.48502 * 109.47581 * 89.99875 * 8 6 4 10 10 H 1.48505 * 109.46910 * 209.99669 * 8 6 4 11 11 H 1.48501 * 109.47339 * 329.99302 * 8 6 4 12 12 C 1.46507 * 119.99515 * 95.73747 * 3 2 1 13 13 H 1.09003 * 109.46806 * 180.09101 * 12 3 2 14 14 C 1.52996 * 109.47311 * 60.08704 * 12 3 2 15 15 C 1.53003 * 109.46955 * 300.08435 * 12 3 2 16 16 N 1.46497 * 109.47439 * 305.00603 * 15 12 3 17 17 C 1.34773 * 120.00193 * 180.02562 * 16 15 12 18 18 O 1.21622 * 119.99761 * 359.97438 * 17 16 15 19 19 C 1.47192 * 120.00274 * 179.97438 * 17 16 15 20 20 C 1.33789 * 124.65466 * 179.97438 * 19 17 16 21 21 C 1.40097 * 115.50643 * 179.73117 * 20 19 17 22 22 C 1.41717 * 129.98672 * 179.55029 * 21 20 19 23 23 C 1.36041 * 119.33437 * 180.41704 * 22 21 20 24 24 N 1.32309 * 121.58171 * 0.29448 * 23 22 21 25 25 C 1.31360 * 122.05467 * 359.97438 * 24 23 22 26 26 C 1.39731 * 120.59698 * 0.02562 * 25 24 23 27 27 S 1.75538 * 124.64818 * 359.97438 * 19 17 16 28 28 H 1.08999 * 109.46564 * 299.99304 * 1 2 3 29 29 H 1.08992 * 109.47229 * 59.99612 * 1 2 3 30 30 H 1.08999 * 109.47161 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46940 * 240.00437 * 2 1 3 32 32 H 1.08998 * 109.47602 * 120.00639 * 2 1 3 33 33 H 0.96997 * 120.00197 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46997 * 59.99828 * 14 12 3 35 35 H 1.08999 * 109.47063 * 179.97438 * 14 12 3 36 36 H 1.08994 * 109.46943 * 300.00152 * 14 12 3 37 37 H 1.08998 * 109.47045 * 185.00093 * 15 12 3 38 38 H 1.08998 * 109.47038 * 65.00424 * 15 12 3 39 39 H 0.97007 * 120.00139 * 359.97438 * 16 15 12 40 40 H 1.08001 * 122.24250 * 0.02584 * 20 19 17 41 41 H 1.07994 * 120.33352 * 0.69013 * 22 21 20 42 42 H 1.08000 * 119.20757 * 180.27845 * 23 22 21 43 43 H 1.07998 * 119.69811 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1349 2.0663 -1.1799 5 1 1.4369 1.8812 -1.9829 6 6 3.1501 2.9987 -1.3438 7 7 4.1871 2.9918 -0.5333 8 14 3.0444 4.2632 -2.7146 9 1 2.3488 5.4768 -2.2161 10 1 4.4138 4.6256 -3.1604 11 1 2.2868 3.6925 -3.8572 12 6 2.3822 2.0294 1.2625 13 1 2.7191 3.0470 1.0645 14 6 3.5079 1.2411 1.9348 15 6 1.1631 2.0666 2.1864 16 7 0.0468 2.7172 1.4961 17 6 -1.1384 2.8637 2.1208 18 8 -1.2813 2.4555 3.2575 19 6 -2.2600 3.5179 1.4274 20 6 -3.4732 3.7113 1.9572 21 6 -4.3971 4.3605 1.1280 22 6 -5.7495 4.7089 1.3689 23 6 -6.4596 5.3379 0.3938 24 7 -5.9198 5.6282 -0.7787 25 6 -4.6738 5.3275 -1.0663 26 6 -3.8639 4.6805 -0.1293 27 16 -2.1891 4.1512 -0.2082 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 4.8963 3.6436 -0.6476 34 1 4.3763 1.2146 1.2765 35 1 3.7788 1.7236 2.8739 36 1 3.1708 0.2236 2.1327 37 1 1.4082 2.6266 3.0889 38 1 0.8803 1.0491 2.4558 39 1 0.1608 3.0432 0.5896 40 1 -3.7220 3.3928 2.9587 41 1 -6.2104 4.4813 2.3187 42 1 -7.4887 5.6065 0.5813 43 1 -4.2718 5.5827 -2.0356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153827967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:51 Heat of formation + Delta-G solvation = 40.409297 kcal Electronic energy + Delta-G solvation = -26433.997018 eV Core-core repulsion = 22799.359912 eV Total energy + Delta-G solvation = -3634.637106 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.62101 -39.46837 -37.11687 -36.08038 -33.84014 -31.94572 -31.68255 -31.34486 -30.43442 -28.24228 -26.37812 -24.61872 -24.02581 -23.91704 -21.91309 -21.47190 -20.14935 -19.35737 -18.50431 -17.11984 -16.83244 -16.59015 -16.14521 -15.47138 -15.13787 -14.81511 -14.64601 -14.57165 -14.10545 -14.02320 -13.91646 -13.41395 -13.03270 -12.75984 -12.51487 -12.35485 -12.00140 -11.99315 -11.91175 -11.56509 -11.11826 -11.00920 -10.98982 -10.85861 -10.75294 -10.34058 -10.17746 -10.14158 -9.95553 -9.83035 -9.70493 -9.50751 -9.25292 -8.62118 -8.54163 -8.06367 -6.73883 -5.93933 -3.43169 0.03764 0.76577 1.17784 1.65628 1.83513 3.25941 3.27437 3.36540 3.37152 3.39351 3.53310 4.19186 4.36470 4.38401 4.55143 4.66295 4.96365 5.16943 5.20504 5.29039 5.32801 5.37034 5.57642 5.77513 5.88670 5.97201 5.99892 6.08835 6.17827 6.29841 6.31110 6.39862 6.47999 6.53447 6.61594 6.77116 6.85138 6.86712 7.10731 7.40078 7.50558 7.65326 7.72424 7.87001 8.36370 8.41887 9.10115 9.71156 10.28237 11.12709 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013464 B = 0.004002 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.108464 B = 6995.593128 C = 8277.927824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.140 3.860 3 N -0.583 5.583 4 C -0.266 4.266 5 H 0.065 0.935 6 C 0.014 3.986 7 N -0.890 5.890 8 Si 0.893 3.107 9 H -0.285 1.285 10 H -0.291 1.291 11 H -0.277 1.277 12 C 0.175 3.825 13 H 0.101 0.899 14 C -0.144 4.144 15 C 0.100 3.900 16 N -0.689 5.689 17 C 0.574 3.426 18 O -0.539 6.539 19 C -0.192 4.192 20 C -0.069 4.069 21 C -0.042 4.042 22 C -0.122 4.122 23 C 0.074 3.926 24 N -0.471 5.471 25 C 0.161 3.839 26 C -0.207 4.207 27 S 0.184 5.816 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.255 0.745 34 H 0.080 0.920 35 H 0.033 0.967 36 H 0.030 0.970 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.411 0.589 40 H 0.158 0.842 41 H 0.141 0.859 42 H 0.159 0.841 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.466 2.664 3.020 15.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.396 4.396 5 H 0.083 0.917 6 C -0.187 4.187 7 N -0.532 5.532 8 Si 0.722 3.278 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.202 1.202 12 C 0.068 3.932 13 H 0.119 0.881 14 C -0.203 4.203 15 C -0.025 4.025 16 N -0.339 5.339 17 C 0.358 3.642 18 O -0.419 6.419 19 C -0.313 4.313 20 C -0.101 4.101 21 C -0.058 4.058 22 C -0.144 4.144 23 C -0.075 4.075 24 N -0.180 5.180 25 C -0.009 4.009 26 C -0.326 4.326 27 S 0.450 5.550 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.248 0.752 40 H 0.175 0.825 41 H 0.158 0.842 42 H 0.176 0.824 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -13.731 2.917 2.135 14.198 hybrid contribution -0.490 0.303 0.576 0.815 sum -14.221 3.220 2.711 14.831 Atomic orbital electron populations 1.22460 1.00087 0.99135 1.01432 1.20765 0.91596 0.87396 0.98857 1.43909 1.75998 1.08332 1.02261 1.19111 1.08735 1.18303 0.93409 0.91706 1.25150 0.94463 1.01272 0.97788 1.69997 1.07823 1.35821 1.39559 0.86449 0.77126 0.82017 0.82204 1.21156 1.21681 1.20219 1.20518 0.88760 0.99724 0.84212 0.88129 1.22015 1.01053 0.97954 0.99297 1.22314 0.87747 0.96449 0.95988 1.45921 1.10663 1.58370 1.18951 1.17101 0.81905 0.79559 0.85683 1.90781 1.82874 1.50698 1.17574 1.24237 0.99340 1.08042 0.99637 1.20092 0.90675 0.97984 1.01366 1.18349 0.95264 0.99402 0.92793 1.21765 0.92235 0.99159 1.01269 1.22125 1.00378 0.96245 0.88755 1.67706 1.11620 1.18022 1.20687 1.22355 0.88392 0.92425 0.97777 1.24259 1.00770 1.07764 0.99795 1.84734 1.04266 1.56146 1.09830 0.93234 0.93359 0.94703 0.93962 0.94443 0.93478 0.90152 0.94754 0.95056 0.92400 0.92289 0.75177 0.82456 0.84151 0.82394 0.81875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 9.87 37.16 0.37 -2.67 16 2 C 0.14 2.75 5.67 -4.04 -0.02 2.73 16 3 N -0.58 -12.71 1.85 -165.66 -0.31 -13.02 16 4 C -0.27 -6.41 9.26 -15.06 -0.14 -6.55 16 5 H 0.07 1.58 7.89 -52.49 -0.41 1.16 16 6 C 0.01 0.34 4.85 -17.43 -0.08 0.26 16 7 N -0.89 -23.00 10.60 55.49 0.59 -22.41 16 8 Si 0.89 19.79 29.59 -169.99 -5.03 14.76 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 C 0.18 3.63 1.92 -67.93 -0.13 3.50 16 13 H 0.10 2.38 6.04 -51.93 -0.31 2.06 16 14 C -0.14 -2.84 9.05 37.16 0.34 -2.50 16 15 C 0.10 1.86 4.34 -4.04 -0.02 1.84 16 16 N -0.69 -12.39 3.98 -61.46 -0.24 -12.64 16 17 C 0.57 10.08 7.57 -12.63 -0.10 9.99 16 18 O -0.54 -10.69 16.73 5.26 0.09 -10.60 16 19 C -0.19 -2.87 6.33 -37.51 -0.24 -3.11 16 20 C -0.07 -0.91 9.81 -40.45 -0.40 -1.31 16 21 C -0.04 -0.51 5.91 -107.11 -0.63 -1.15 16 22 C -0.12 -1.19 10.13 -39.04 -0.40 -1.58 16 23 C 0.07 0.71 11.06 -18.13 -0.20 0.51 16 24 N -0.47 -5.44 10.34 -13.41 -0.14 -5.58 16 25 C 0.16 1.83 11.24 -17.20 -0.19 1.64 16 26 C -0.21 -2.59 6.54 -38.26 -0.25 -2.84 16 27 S 0.18 2.50 22.26 -107.50 -2.39 0.10 16 28 H 0.05 0.90 4.99 -51.93 -0.26 0.64 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 32 H 0.04 0.71 6.45 -51.93 -0.33 0.37 16 33 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 34 H 0.08 1.81 7.40 -51.93 -0.38 1.43 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.03 0.57 6.67 -51.93 -0.35 0.22 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.11 7.05 -51.93 -0.37 0.75 16 39 H 0.41 7.60 6.95 -40.82 -0.28 7.32 16 40 H 0.16 1.92 7.96 -52.49 -0.42 1.50 16 41 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -27.63 364.73 -9.67 -37.30 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.63 Total: 7.82 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -2.09 Total: -1.24 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.10 Total: -53.65 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.76 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.39 Total: 0.10 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.63 -9.67 -37.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153827967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.710 kcal (2) G-P(sol) polarization free energy of solvation -27.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds