Wall clock time and date at job start Tue Mar 31 2020 19:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47367 * 2 1 4 4 C 1.36934 * 120.00421 * 275.73782 * 3 2 1 5 5 H 1.07997 * 119.99780 * 33.26824 * 4 3 2 6 6 C 1.38809 * 120.00183 * 213.27074 * 4 3 2 7 7 N 1.31618 * 120.00192 * 17.25879 * 6 4 3 8 8 Si 1.86799 * 119.99803 * 197.26724 * 6 4 3 9 9 H 1.48502 * 109.47581 * 89.99875 * 8 6 4 10 10 H 1.48505 * 109.46910 * 209.99669 * 8 6 4 11 11 H 1.48501 * 109.47339 * 329.99302 * 8 6 4 12 12 C 1.46507 * 119.99515 * 95.73747 * 3 2 1 13 13 H 1.09003 * 109.46806 * 180.09101 * 12 3 2 14 14 C 1.52996 * 109.47311 * 60.08704 * 12 3 2 15 15 C 1.53003 * 109.46955 * 300.08435 * 12 3 2 16 16 N 1.46497 * 109.47439 * 305.00603 * 15 12 3 17 17 C 1.34773 * 120.00193 * 180.02562 * 16 15 12 18 18 O 1.21622 * 119.99761 * 359.97438 * 17 16 15 19 19 C 1.47192 * 120.00274 * 179.97438 * 17 16 15 20 20 C 1.33789 * 124.65466 * 179.97438 * 19 17 16 21 21 C 1.40097 * 115.50643 * 179.73117 * 20 19 17 22 22 C 1.41717 * 129.98672 * 179.55029 * 21 20 19 23 23 C 1.36041 * 119.33437 * 180.41704 * 22 21 20 24 24 N 1.32309 * 121.58171 * 0.29448 * 23 22 21 25 25 C 1.31360 * 122.05467 * 359.97438 * 24 23 22 26 26 C 1.39731 * 120.59698 * 0.02562 * 25 24 23 27 27 S 1.75538 * 124.64818 * 359.97438 * 19 17 16 28 28 H 1.08999 * 109.46564 * 299.99304 * 1 2 3 29 29 H 1.08992 * 109.47229 * 59.99612 * 1 2 3 30 30 H 1.08999 * 109.47161 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46940 * 240.00437 * 2 1 3 32 32 H 1.08998 * 109.47602 * 120.00639 * 2 1 3 33 33 H 0.96997 * 120.00197 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46997 * 59.99828 * 14 12 3 35 35 H 1.08999 * 109.47063 * 179.97438 * 14 12 3 36 36 H 1.08994 * 109.46943 * 300.00152 * 14 12 3 37 37 H 1.08998 * 109.47045 * 185.00093 * 15 12 3 38 38 H 1.08998 * 109.47038 * 65.00424 * 15 12 3 39 39 H 0.97007 * 120.00139 * 359.97438 * 16 15 12 40 40 H 1.08001 * 122.24250 * 0.02584 * 20 19 17 41 41 H 1.07994 * 120.33352 * 0.69013 * 22 21 20 42 42 H 1.08000 * 119.20757 * 180.27845 * 23 22 21 43 43 H 1.07998 * 119.69811 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1349 2.0663 -1.1799 5 1 1.4369 1.8812 -1.9829 6 6 3.1501 2.9987 -1.3438 7 7 4.1871 2.9918 -0.5333 8 14 3.0444 4.2632 -2.7146 9 1 2.3488 5.4768 -2.2161 10 1 4.4138 4.6256 -3.1604 11 1 2.2868 3.6925 -3.8572 12 6 2.3822 2.0294 1.2625 13 1 2.7191 3.0470 1.0645 14 6 3.5079 1.2411 1.9348 15 6 1.1631 2.0666 2.1864 16 7 0.0468 2.7172 1.4961 17 6 -1.1384 2.8637 2.1208 18 8 -1.2813 2.4555 3.2575 19 6 -2.2600 3.5179 1.4274 20 6 -3.4732 3.7113 1.9572 21 6 -4.3971 4.3605 1.1280 22 6 -5.7495 4.7089 1.3689 23 6 -6.4596 5.3379 0.3938 24 7 -5.9198 5.6282 -0.7787 25 6 -4.6738 5.3275 -1.0663 26 6 -3.8639 4.6805 -0.1293 27 16 -2.1891 4.1512 -0.2082 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 4.8963 3.6436 -0.6476 34 1 4.3763 1.2146 1.2765 35 1 3.7788 1.7236 2.8739 36 1 3.1708 0.2236 2.1327 37 1 1.4082 2.6266 3.0889 38 1 0.8803 1.0491 2.4558 39 1 0.1608 3.0432 0.5896 40 1 -3.7220 3.3928 2.9587 41 1 -6.2104 4.4813 2.3187 42 1 -7.4887 5.6065 0.5813 43 1 -4.2718 5.5827 -2.0356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153827967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:50 Heat of formation + Delta-G solvation = 26.177906 kcal Electronic energy + Delta-G solvation = -26434.614137 eV Core-core repulsion = 22799.359912 eV Total energy + Delta-G solvation = -3635.254225 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.53550 -40.82008 -38.69873 -37.12001 -35.37503 -33.73840 -32.87050 -32.47616 -31.52421 -29.94333 -27.72505 -25.82572 -25.65013 -24.91927 -23.41044 -22.62081 -21.38664 -20.95016 -19.69483 -18.71181 -17.95011 -17.62850 -17.26279 -16.86976 -16.57451 -16.34998 -15.90405 -15.60011 -15.43233 -15.32950 -14.89902 -14.86774 -14.34007 -14.05649 -14.02033 -13.88030 -13.53577 -13.27841 -13.05758 -12.90002 -12.79529 -12.72262 -12.55959 -12.41836 -12.05246 -11.97963 -11.85517 -11.37581 -11.29065 -11.18243 -11.03163 -10.76449 -10.43751 -10.33497 -9.99021 -9.01455 -8.53915 -7.82376 -5.32504 -0.96529 -0.05166 0.16565 0.65747 0.82316 1.49356 1.54190 1.59118 1.97954 2.07271 2.54561 2.68721 3.32175 3.38176 3.49937 3.59587 3.65128 3.82900 3.84059 4.19117 4.32118 4.43767 4.47053 4.52701 4.59727 4.64429 4.66877 4.79547 4.85182 4.92373 4.94413 4.96237 5.05466 5.07197 5.21769 5.31201 5.35845 5.53347 5.56781 5.68779 5.75717 5.87203 6.43373 6.51226 6.83541 7.00460 7.24589 7.92097 8.44322 9.21575 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013464 B = 0.004002 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.108464 B = 6995.593128 C = 8277.927824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.139 3.861 3 N -0.592 5.592 4 C -0.263 4.263 5 H 0.061 0.939 6 C -0.027 4.027 7 N -0.913 5.913 8 Si 0.943 3.057 9 H -0.282 1.282 10 H -0.301 1.301 11 H -0.272 1.272 12 C 0.181 3.819 13 H 0.071 0.929 14 C -0.135 4.135 15 C 0.112 3.888 16 N -0.692 5.692 17 C 0.578 3.422 18 O -0.567 6.567 19 C -0.221 4.221 20 C -0.048 4.048 21 C -0.060 4.060 22 C -0.111 4.111 23 C 0.073 3.927 24 N -0.481 5.481 25 C 0.151 3.849 26 C -0.208 4.208 27 S 0.165 5.835 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.056 0.944 31 H 0.032 0.968 32 H 0.046 0.954 33 H 0.249 0.751 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.408 0.592 40 H 0.168 0.832 41 H 0.174 0.826 42 H 0.194 0.806 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.226 2.902 3.330 17.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.014 3.986 3 N -0.314 5.314 4 C -0.393 4.393 5 H 0.079 0.921 6 C -0.225 4.225 7 N -0.556 5.556 8 Si 0.772 3.228 9 H -0.209 1.209 10 H -0.228 1.228 11 H -0.196 1.196 12 C 0.074 3.926 13 H 0.089 0.911 14 C -0.194 4.194 15 C -0.013 4.013 16 N -0.341 5.341 17 C 0.364 3.636 18 O -0.449 6.449 19 C -0.341 4.341 20 C -0.081 4.081 21 C -0.075 4.075 22 C -0.133 4.133 23 C -0.076 4.076 24 N -0.191 5.191 25 C -0.019 4.019 26 C -0.327 4.327 27 S 0.431 5.569 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.245 0.755 40 H 0.185 0.815 41 H 0.191 0.809 42 H 0.211 0.789 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -16.506 3.145 2.434 16.978 hybrid contribution 0.197 0.236 0.495 0.582 sum -16.309 3.381 2.928 16.911 Atomic orbital electron populations 1.22281 0.98328 1.00348 1.00725 1.20833 0.92800 0.86184 0.98805 1.44028 1.76144 1.09230 1.02032 1.19238 1.07993 1.18100 0.93949 0.92126 1.25654 0.94465 1.02811 0.99566 1.70123 1.08309 1.36273 1.40941 0.85655 0.76291 0.80411 0.80464 1.20887 1.22839 1.19645 1.20371 0.89829 0.98134 0.84307 0.91126 1.21876 0.99473 0.98819 0.99235 1.22066 0.87133 0.96667 0.95464 1.45888 1.10869 1.58526 1.18773 1.17335 0.82091 0.78887 0.85322 1.90753 1.83397 1.52025 1.18678 1.23936 0.99222 1.10402 1.00557 1.20293 0.90082 0.96135 1.01593 1.18547 0.96415 1.00043 0.92524 1.22152 0.90864 0.97632 1.02634 1.22756 1.01815 0.95156 0.87876 1.67782 1.11505 1.18025 1.21794 1.22653 0.88424 0.92422 0.98378 1.24331 0.99919 1.07991 1.00442 1.84697 1.05887 1.56972 1.09373 0.93774 0.94153 0.92484 0.94918 0.93531 0.94206 0.93186 0.93030 0.93721 0.91993 0.92204 0.75508 0.81488 0.80851 0.78923 0.80276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.40 9.87 71.98 0.71 -4.69 16 2 C 0.14 5.39 5.67 86.38 0.49 5.88 16 3 N -0.59 -25.96 1.85 -678.02 -1.25 -27.22 16 4 C -0.26 -12.77 9.26 84.03 0.78 -11.99 16 5 H 0.06 2.97 7.89 -2.91 -0.02 2.94 16 6 C -0.03 -1.36 4.85 84.86 0.41 -0.95 16 7 N -0.91 -48.30 10.60 21.65 0.23 -48.07 16 8 Si 0.94 41.21 29.59 68.60 2.03 43.24 16 9 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 11 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 12 C 0.18 7.56 1.92 44.99 0.09 7.65 16 13 H 0.07 3.42 6.04 -2.39 -0.01 3.41 16 14 C -0.13 -5.32 9.05 71.98 0.65 -4.67 16 15 C 0.11 4.15 4.34 86.38 0.37 4.52 16 16 N -0.69 -24.99 3.98 -466.62 -1.86 -26.85 16 17 C 0.58 20.25 7.57 86.60 0.66 20.91 16 18 O -0.57 -22.27 16.73 -4.10 -0.07 -22.34 16 19 C -0.22 -6.53 6.33 23.61 0.15 -6.38 16 20 C -0.05 -1.20 9.81 21.71 0.21 -0.99 16 21 C -0.06 -1.33 5.91 -21.48 -0.13 -1.46 16 22 C -0.11 -1.75 10.13 22.62 0.23 -1.52 16 23 C 0.07 1.14 11.06 84.11 0.93 2.07 16 24 N -0.48 -9.83 10.34 -196.33 -2.03 -11.86 16 25 C 0.15 3.17 11.24 85.12 0.96 4.12 16 26 C -0.21 -4.91 6.54 23.12 0.15 -4.76 16 27 S 0.16 4.44 22.26 -56.49 -1.26 3.18 16 28 H 0.04 1.56 4.99 -2.39 -0.01 1.55 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.03 1.32 8.09 -2.38 -0.02 1.30 16 32 H 0.05 1.71 6.45 -2.39 -0.02 1.69 16 33 H 0.25 13.05 8.31 -92.71 -0.77 12.28 16 34 H 0.05 2.28 7.40 -2.39 -0.02 2.26 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.04 1.60 6.67 -2.39 -0.02 1.59 16 37 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.06 2.21 7.05 -2.39 -0.02 2.20 16 39 H 0.41 15.34 6.95 -92.70 -0.64 14.69 16 40 H 0.17 3.76 7.96 -2.91 -0.02 3.74 16 41 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.19 1.57 8.06 -2.91 -0.02 1.54 16 43 H 0.18 2.96 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -59.44 364.73 2.85 -56.59 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.40 Total: 25.58 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 6.66 Total: 7.75 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -4.91 Total: -114.00 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.07 Total: -22.34 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -1.26 Total: 3.18 kcal Total: -59.44 2.85 -56.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153827967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.765 kcal (2) G-P(sol) polarization free energy of solvation -59.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds