Wall clock time and date at job start Tue Mar 31 2020 19:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47291 * 2 1 4 4 C 1.36938 * 120.00235 * 274.03959 * 3 2 1 5 5 H 1.08004 * 120.00067 * 174.70707 * 4 3 2 6 6 C 1.38814 * 119.99812 * 354.70709 * 4 3 2 7 7 N 1.31619 * 119.99601 * 31.38875 * 6 4 3 8 8 Si 1.86792 * 120.00069 * 211.38126 * 6 4 3 9 9 H 1.48507 * 109.47151 * 84.99866 * 8 6 4 10 10 H 1.48501 * 109.47176 * 204.99880 * 8 6 4 11 11 H 1.48503 * 109.47481 * 325.00167 * 8 6 4 12 12 C 1.46503 * 120.00078 * 94.04158 * 3 2 1 13 13 H 1.09000 * 109.47292 * 179.97438 * 12 3 2 14 14 C 1.53005 * 109.47332 * 59.99872 * 12 3 2 15 15 C 1.52997 * 109.47077 * 299.99925 * 12 3 2 16 16 N 1.46500 * 109.47331 * 305.00209 * 15 12 3 17 17 C 1.34773 * 120.00283 * 180.02562 * 16 15 12 18 18 O 1.21654 * 120.00016 * 0.26826 * 17 16 15 19 19 C 1.46981 * 120.00169 * 179.97438 * 17 16 15 20 20 C 1.33678 * 124.64247 * 179.97438 * 19 17 16 21 21 C 1.40310 * 115.50842 * 180.02562 * 20 19 17 22 22 C 1.41638 * 129.15070 * 180.02562 * 21 20 19 23 23 C 1.36529 * 118.86120 * 180.02562 * 22 21 20 24 24 C 1.38776 * 119.72067 * 359.95506 * 23 22 21 25 25 N 1.31280 * 121.07672 * 0.04912 * 24 23 22 26 26 C 1.33431 * 121.98108 * 359.97359 * 25 24 23 27 27 S 1.75477 * 124.63790 * 359.69928 * 19 17 16 28 28 H 1.08998 * 109.47430 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46940 * 299.99964 * 1 2 3 30 30 H 1.08996 * 109.47026 * 59.99806 * 1 2 3 31 31 H 1.09000 * 109.46771 * 239.99715 * 2 1 3 32 32 H 1.09005 * 109.47318 * 120.00267 * 2 1 3 33 33 H 0.97005 * 119.99716 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47106 * 180.02562 * 14 12 3 35 35 H 1.08995 * 109.46750 * 300.00555 * 14 12 3 36 36 H 1.09007 * 109.47030 * 59.99633 * 14 12 3 37 37 H 1.09002 * 109.47340 * 184.99802 * 15 12 3 38 38 H 1.09005 * 109.46990 * 64.99879 * 15 12 3 39 39 H 0.97003 * 119.99801 * 359.97438 * 16 15 12 40 40 H 1.07996 * 122.24300 * 0.02696 * 20 19 17 41 41 H 1.08000 * 120.56901 * 359.97438 * 22 21 20 42 42 H 1.08000 * 120.14266 * 179.97438 * 23 22 21 43 43 H 1.07997 * 119.45865 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1679 2.0546 -1.1829 5 1 2.4455 3.0983 -1.1788 6 6 1.9626 1.3957 -2.3874 7 7 1.0860 0.4167 -2.4608 8 14 2.9303 1.8986 -3.9039 9 1 4.2410 1.2004 -3.9087 10 1 2.1677 1.5283 -5.1231 11 1 3.1518 3.3669 -3.8854 12 6 2.3469 2.0420 1.2656 13 1 2.6913 3.0568 1.0669 14 6 3.4518 1.2592 1.9779 15 6 1.1021 2.0901 2.1539 16 7 0.0068 2.7348 1.4253 17 6 -1.1955 2.8892 2.0144 18 8 -1.3699 2.4975 3.1529 19 6 -2.2943 3.5365 1.2836 20 6 -3.5207 3.7365 1.7764 21 6 -4.4231 4.3735 0.9111 22 6 -5.7776 4.7240 1.1317 23 6 -6.4686 5.3456 0.1316 24 6 -5.8369 5.6216 -1.0728 25 7 -4.5811 5.2936 -1.2700 26 6 -3.8540 4.6843 -0.3316 27 16 -2.1736 4.1588 -0.3527 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.9428 -0.0440 -3.3024 34 1 3.6959 1.7507 2.9197 35 1 3.1078 0.2442 2.1765 36 1 4.3387 1.2249 1.3450 37 1 1.3222 2.6590 3.0573 38 1 0.8102 1.0756 2.4255 39 1 0.1472 3.0513 0.5192 40 1 -3.7983 3.4286 2.7736 41 1 -6.2557 4.5027 2.0744 42 1 -7.5025 5.6218 0.2773 43 1 -6.3874 6.1138 -1.8608 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156188764.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:41 Heat of formation + Delta-G solvation = 53.448760 kcal Electronic energy + Delta-G solvation = -26460.222030 eV Core-core repulsion = 22826.150358 eV Total energy + Delta-G solvation = -3634.071672 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -40.51235 -39.41159 -37.13849 -35.72715 -33.97605 -32.53025 -32.24390 -30.25467 -29.88552 -28.44121 -26.37566 -24.58820 -24.05020 -23.69668 -21.90828 -21.43341 -20.07868 -19.19488 -18.41069 -17.20133 -16.97294 -16.40943 -15.90678 -15.43977 -15.20203 -15.02109 -14.91019 -14.41722 -13.96615 -13.87311 -13.32802 -13.07294 -12.90283 -12.68229 -12.53103 -12.40759 -12.31420 -11.91933 -11.63358 -11.48782 -11.15598 -10.95886 -10.79191 -10.73035 -10.63154 -10.52553 -10.30414 -9.86522 -9.82277 -9.64806 -9.61000 -9.30146 -8.87721 -8.54042 -8.25126 -8.07140 -7.04414 -5.86945 -3.07900 0.13513 0.90918 1.17497 1.82816 1.88156 3.32235 3.38604 3.46705 3.47683 3.49646 3.57276 4.29095 4.45319 4.46837 4.66100 4.71928 4.99690 5.12642 5.18894 5.36336 5.37080 5.49624 5.55158 5.72816 5.85944 5.92897 6.02484 6.04891 6.09077 6.25654 6.29453 6.33360 6.60909 6.66933 6.79359 6.90424 6.97928 7.10931 7.20476 7.57614 7.65925 7.80145 7.89472 8.11600 8.28070 8.47079 9.18562 9.82164 10.27310 11.16462 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012713 B = 0.004067 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.014019 B = 6882.402594 C = 8406.148031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.165 3.835 3 N -0.595 5.595 4 C -0.268 4.268 5 H 0.076 0.924 6 C 0.014 3.986 7 N -0.878 5.878 8 Si 0.878 3.122 9 H -0.289 1.289 10 H -0.294 1.294 11 H -0.282 1.282 12 C 0.160 3.840 13 H 0.069 0.931 14 C -0.157 4.157 15 C 0.104 3.896 16 N -0.691 5.691 17 C 0.582 3.418 18 O -0.542 6.542 19 C -0.214 4.214 20 C -0.054 4.054 21 C -0.132 4.132 22 C -0.025 4.025 23 C -0.182 4.182 24 C 0.138 3.862 25 N -0.455 5.455 26 C 0.048 3.952 27 S 0.217 5.783 28 H 0.014 0.986 29 H 0.018 0.982 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.007 0.993 33 H 0.253 0.747 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.411 0.589 40 H 0.156 0.844 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.130 8.101 6.973 15.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.041 3.959 3 N -0.317 5.317 4 C -0.395 4.395 5 H 0.094 0.906 6 C -0.185 4.185 7 N -0.522 5.522 8 Si 0.708 3.292 9 H -0.217 1.217 10 H -0.221 1.221 11 H -0.207 1.207 12 C 0.051 3.949 13 H 0.087 0.913 14 C -0.217 4.217 15 C -0.022 4.022 16 N -0.341 5.341 17 C 0.366 3.634 18 O -0.422 6.422 19 C -0.333 4.333 20 C -0.087 4.087 21 C -0.144 4.144 22 C -0.053 4.053 23 C -0.205 4.205 24 C -0.034 4.034 25 N -0.165 5.165 26 C -0.196 4.196 27 S 0.484 5.516 28 H 0.034 0.966 29 H 0.037 0.963 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.025 0.975 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.249 0.751 40 H 0.173 0.827 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.490 7.881 5.771 13.619 hybrid contribution -1.153 0.021 0.408 1.223 sum -10.643 7.901 6.179 14.625 Atomic orbital electron populations 1.22435 0.99212 0.98122 1.01304 1.20895 0.92425 0.84477 0.98125 1.44258 1.75705 1.11275 1.00460 1.19187 1.42232 0.94863 0.83260 0.90625 1.24674 0.98511 0.98156 0.97153 1.70278 1.30136 1.26515 1.25241 0.86657 0.81260 0.78075 0.83235 1.21683 1.22117 1.20728 1.20563 0.91069 0.96607 0.86633 0.91272 1.22178 0.99651 1.00606 0.99265 1.22131 0.87900 0.97420 0.94731 1.45808 1.10321 1.58964 1.18991 1.16958 0.81722 0.79118 0.85601 1.90775 1.82527 1.51291 1.17650 1.24055 0.99513 1.09731 1.00025 1.19983 0.90807 0.97066 1.00834 1.19026 0.96237 1.04293 0.94846 1.21241 0.91292 0.93387 0.99381 1.21685 1.01792 1.02106 0.94919 1.22896 0.89578 0.94636 0.96291 1.67274 1.07361 1.10974 1.30922 1.24096 1.00525 1.01785 0.93172 1.84982 1.02083 1.55809 1.08747 0.96649 0.96323 0.89312 0.89736 0.97507 0.93662 0.93595 0.92917 0.92152 0.92352 0.91574 0.75133 0.82681 0.84178 0.84077 0.81773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.27 37.16 0.34 -3.10 16 2 C 0.17 3.76 5.01 -4.04 -0.02 3.74 16 3 N -0.59 -13.12 1.92 -165.66 -0.32 -13.44 16 4 C -0.27 -6.54 9.38 -15.06 -0.14 -6.68 16 5 H 0.08 1.82 7.83 -52.48 -0.41 1.41 16 6 C 0.01 0.35 4.97 -17.43 -0.09 0.26 16 7 N -0.88 -23.09 8.40 55.49 0.47 -22.62 16 8 Si 0.88 20.51 29.65 -169.99 -5.04 15.47 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.16 2.93 2.87 -67.93 -0.19 2.74 16 13 H 0.07 1.25 7.78 -51.93 -0.40 0.84 16 14 C -0.16 -2.53 9.18 37.16 0.34 -2.19 16 15 C 0.10 1.84 4.32 -4.04 -0.02 1.82 16 16 N -0.69 -12.67 3.98 -61.52 -0.25 -12.91 16 17 C 0.58 10.70 7.54 -12.72 -0.10 10.60 16 18 O -0.54 -11.03 16.72 5.23 0.09 -10.94 16 19 C -0.21 -3.49 6.32 -37.64 -0.24 -3.73 16 20 C -0.05 -0.78 9.80 -40.40 -0.40 -1.17 16 21 C -0.13 -1.77 5.88 -107.10 -0.63 -2.40 16 22 C -0.03 -0.25 10.16 -38.90 -0.40 -0.64 16 23 C -0.18 -1.53 10.01 -40.00 -0.40 -1.93 16 24 C 0.14 1.40 11.18 -17.59 -0.20 1.21 16 25 N -0.46 -6.49 10.39 -11.64 -0.12 -6.61 16 26 C 0.05 0.72 7.66 -16.13 -0.12 0.60 16 27 S 0.22 3.50 22.25 -107.50 -2.39 1.11 16 28 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.02 0.40 4.84 -51.92 -0.25 0.15 16 30 H 0.09 2.26 6.30 -51.93 -0.33 1.93 16 31 H 0.08 2.17 5.84 -51.93 -0.30 1.87 16 32 H 0.01 0.14 6.43 -51.93 -0.33 -0.19 16 33 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.86 6.66 -51.93 -0.35 0.52 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.26 6.92 -51.93 -0.36 0.90 16 39 H 0.41 7.88 6.94 -40.82 -0.28 7.59 16 40 H 0.16 2.00 7.96 -52.49 -0.42 1.58 16 41 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 43 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -29.23 360.72 -9.91 -39.14 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.53 Total: 6.25 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -2.25 Total: -0.87 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.22 Total: -55.58 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.04 Total: 15.47 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -2.39 Total: 1.11 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.23 -9.91 -39.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156188764.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.584 kcal (2) G-P(sol) polarization free energy of solvation -29.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds