Wall clock time and date at job start Tue Mar 31 2020 19:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47291 * 2 1 4 4 C 1.36938 * 120.00235 * 274.03959 * 3 2 1 5 5 H 1.08004 * 120.00067 * 174.70707 * 4 3 2 6 6 C 1.38814 * 119.99812 * 354.70709 * 4 3 2 7 7 N 1.31619 * 119.99601 * 31.38875 * 6 4 3 8 8 Si 1.86792 * 120.00069 * 211.38126 * 6 4 3 9 9 H 1.48507 * 109.47151 * 84.99866 * 8 6 4 10 10 H 1.48501 * 109.47176 * 204.99880 * 8 6 4 11 11 H 1.48503 * 109.47481 * 325.00167 * 8 6 4 12 12 C 1.46503 * 120.00078 * 94.04158 * 3 2 1 13 13 H 1.09000 * 109.47292 * 179.97438 * 12 3 2 14 14 C 1.53005 * 109.47332 * 59.99872 * 12 3 2 15 15 C 1.52997 * 109.47077 * 299.99925 * 12 3 2 16 16 N 1.46500 * 109.47331 * 305.00209 * 15 12 3 17 17 C 1.34773 * 120.00283 * 180.02562 * 16 15 12 18 18 O 1.21654 * 120.00016 * 0.26826 * 17 16 15 19 19 C 1.46981 * 120.00169 * 179.97438 * 17 16 15 20 20 C 1.33678 * 124.64247 * 179.97438 * 19 17 16 21 21 C 1.40310 * 115.50842 * 180.02562 * 20 19 17 22 22 C 1.41638 * 129.15070 * 180.02562 * 21 20 19 23 23 C 1.36529 * 118.86120 * 180.02562 * 22 21 20 24 24 C 1.38776 * 119.72067 * 359.95506 * 23 22 21 25 25 N 1.31280 * 121.07672 * 0.04912 * 24 23 22 26 26 C 1.33431 * 121.98108 * 359.97359 * 25 24 23 27 27 S 1.75477 * 124.63790 * 359.69928 * 19 17 16 28 28 H 1.08998 * 109.47430 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46940 * 299.99964 * 1 2 3 30 30 H 1.08996 * 109.47026 * 59.99806 * 1 2 3 31 31 H 1.09000 * 109.46771 * 239.99715 * 2 1 3 32 32 H 1.09005 * 109.47318 * 120.00267 * 2 1 3 33 33 H 0.97005 * 119.99716 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47106 * 180.02562 * 14 12 3 35 35 H 1.08995 * 109.46750 * 300.00555 * 14 12 3 36 36 H 1.09007 * 109.47030 * 59.99633 * 14 12 3 37 37 H 1.09002 * 109.47340 * 184.99802 * 15 12 3 38 38 H 1.09005 * 109.46990 * 64.99879 * 15 12 3 39 39 H 0.97003 * 119.99801 * 359.97438 * 16 15 12 40 40 H 1.07996 * 122.24300 * 0.02696 * 20 19 17 41 41 H 1.08000 * 120.56901 * 359.97438 * 22 21 20 42 42 H 1.08000 * 120.14266 * 179.97438 * 23 22 21 43 43 H 1.07997 * 119.45865 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1679 2.0546 -1.1829 5 1 2.4455 3.0983 -1.1788 6 6 1.9626 1.3957 -2.3874 7 7 1.0860 0.4167 -2.4608 8 14 2.9303 1.8986 -3.9039 9 1 4.2410 1.2004 -3.9087 10 1 2.1677 1.5283 -5.1231 11 1 3.1518 3.3669 -3.8854 12 6 2.3469 2.0420 1.2656 13 1 2.6913 3.0568 1.0669 14 6 3.4518 1.2592 1.9779 15 6 1.1021 2.0901 2.1539 16 7 0.0068 2.7348 1.4253 17 6 -1.1955 2.8892 2.0144 18 8 -1.3699 2.4975 3.1529 19 6 -2.2943 3.5365 1.2836 20 6 -3.5207 3.7365 1.7764 21 6 -4.4231 4.3735 0.9111 22 6 -5.7776 4.7240 1.1317 23 6 -6.4686 5.3456 0.1316 24 6 -5.8369 5.6216 -1.0728 25 7 -4.5811 5.2936 -1.2700 26 6 -3.8540 4.6843 -0.3316 27 16 -2.1736 4.1588 -0.3527 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.9428 -0.0440 -3.3024 34 1 3.6959 1.7507 2.9197 35 1 3.1078 0.2442 2.1765 36 1 4.3387 1.2249 1.3450 37 1 1.3222 2.6590 3.0573 38 1 0.8102 1.0756 2.4255 39 1 0.1472 3.0513 0.5192 40 1 -3.7983 3.4286 2.7736 41 1 -6.2557 4.5027 2.0744 42 1 -7.5025 5.6218 0.2773 43 1 -6.3874 6.1138 -1.8608 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156188764.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:40 Heat of formation + Delta-G solvation = 36.959501 kcal Electronic energy + Delta-G solvation = -26460.937058 eV Core-core repulsion = 22826.150358 eV Total energy + Delta-G solvation = -3634.786700 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.48405 -40.79268 -38.74258 -36.81909 -35.58886 -33.86919 -33.36882 -32.02939 -31.01182 -30.19055 -27.64369 -25.74560 -25.53843 -24.97051 -23.56548 -22.58916 -21.36332 -20.74408 -19.59145 -18.78625 -18.22475 -17.63102 -17.21632 -16.88922 -16.39554 -16.26484 -16.08782 -15.81549 -15.42926 -15.33429 -14.72982 -14.33487 -14.15967 -14.09203 -14.00267 -13.78768 -13.56727 -13.26005 -13.17259 -12.78391 -12.75149 -12.57640 -12.47146 -12.38407 -12.12716 -12.08419 -11.62546 -11.41485 -11.38933 -11.26954 -11.14319 -10.51676 -10.20959 -10.12473 -9.76204 -9.19845 -8.89016 -7.81200 -5.00372 -0.89085 0.06262 0.07670 0.71874 0.83110 1.49658 1.56420 1.59269 1.99342 2.14278 2.57032 2.66665 3.27834 3.40208 3.57694 3.61958 3.66702 3.88804 4.01590 4.03790 4.31881 4.37401 4.50220 4.59135 4.64138 4.67232 4.77645 4.79630 4.84029 4.99620 5.02049 5.11953 5.16637 5.25477 5.28110 5.33718 5.37707 5.55273 5.59033 5.71152 5.89164 6.18709 6.37014 6.43575 6.69836 7.02649 7.26020 7.97861 8.39285 9.20998 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012713 B = 0.004067 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.014019 B = 6882.402594 C = 8406.148031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.173 3.827 3 N -0.602 5.602 4 C -0.259 4.259 5 H 0.078 0.922 6 C -0.031 4.031 7 N -0.899 5.899 8 Si 0.928 3.072 9 H -0.295 1.295 10 H -0.306 1.306 11 H -0.276 1.276 12 C 0.158 3.842 13 H 0.073 0.927 14 C -0.148 4.148 15 C 0.110 3.890 16 N -0.695 5.695 17 C 0.583 3.417 18 O -0.568 6.568 19 C -0.241 4.241 20 C -0.032 4.032 21 C -0.150 4.150 22 C -0.021 4.021 23 C -0.165 4.165 24 C 0.142 3.858 25 N -0.497 5.497 26 C 0.037 3.963 27 S 0.159 5.841 28 H 0.017 0.983 29 H 0.023 0.977 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.024 0.976 33 H 0.244 0.756 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.406 0.594 40 H 0.170 0.830 41 H 0.177 0.823 42 H 0.191 0.809 43 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.323 9.564 8.374 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.048 3.952 3 N -0.324 5.324 4 C -0.388 4.388 5 H 0.096 0.904 6 C -0.227 4.227 7 N -0.545 5.545 8 Si 0.759 3.241 9 H -0.223 1.223 10 H -0.234 1.234 11 H -0.201 1.201 12 C 0.050 3.950 13 H 0.091 0.909 14 C -0.207 4.207 15 C -0.015 4.015 16 N -0.343 5.343 17 C 0.369 3.631 18 O -0.450 6.450 19 C -0.360 4.360 20 C -0.065 4.065 21 C -0.161 4.161 22 C -0.049 4.049 23 C -0.187 4.187 24 C -0.029 4.029 25 N -0.208 5.208 26 C -0.206 4.206 27 S 0.425 5.575 28 H 0.036 0.964 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.243 0.757 40 H 0.188 0.812 41 H 0.195 0.805 42 H 0.208 0.792 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -11.667 9.369 7.193 16.602 hybrid contribution -0.713 -0.294 -0.015 0.772 sum -12.380 9.075 7.178 16.945 Atomic orbital electron populations 1.22230 0.99333 0.97799 1.00000 1.20688 0.92155 0.84939 0.97414 1.44363 1.75737 1.11022 1.01295 1.19399 1.40332 0.94956 0.84118 0.90408 1.25131 0.99522 0.99017 0.99027 1.70412 1.31347 1.27800 1.24929 0.85855 0.79628 0.77819 0.80791 1.22328 1.23367 1.20110 1.20778 0.91979 0.96891 0.85354 0.90865 1.22061 0.98132 1.00268 1.00271 1.22067 0.87321 0.97005 0.95144 1.45866 1.10728 1.58981 1.18750 1.17182 0.81992 0.78565 0.85336 1.90741 1.83017 1.52663 1.18590 1.23760 0.99894 1.12407 0.99989 1.20255 0.90107 0.94905 1.01186 1.19245 0.97892 1.05060 0.93921 1.21764 0.89519 0.92223 1.01348 1.22230 1.03617 0.99632 0.93198 1.23723 0.88250 0.92799 0.98113 1.67262 1.09359 1.12657 1.31544 1.23994 0.99565 1.02705 0.94313 1.84951 1.05115 1.57564 1.09869 0.96434 0.95848 0.92162 0.92681 0.95781 0.94619 0.90404 0.93285 0.92806 0.90467 0.92880 0.75715 0.81240 0.80544 0.79205 0.78176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.26 9.27 71.98 0.67 -5.59 16 2 C 0.17 8.00 5.01 86.38 0.43 8.43 16 3 N -0.60 -26.73 1.92 -678.03 -1.30 -28.03 16 4 C -0.26 -12.84 9.38 84.03 0.79 -12.05 16 5 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 6 C -0.03 -1.60 4.97 84.86 0.42 -1.17 16 7 N -0.90 -49.00 8.40 21.65 0.18 -48.82 16 8 Si 0.93 43.24 29.65 68.60 2.03 45.28 16 9 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 10 H -0.31 -14.74 7.11 99.48 0.71 -14.03 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 C 0.16 5.65 2.87 44.99 0.13 5.78 16 13 H 0.07 2.57 7.78 -2.39 -0.02 2.55 16 14 C -0.15 -4.50 9.18 71.98 0.66 -3.84 16 15 C 0.11 3.84 4.32 86.38 0.37 4.22 16 16 N -0.69 -25.98 3.98 -466.80 -1.86 -27.84 16 17 C 0.58 21.90 7.54 86.53 0.65 22.56 16 18 O -0.57 -23.21 16.72 -4.20 -0.07 -23.28 16 19 C -0.24 -8.12 6.32 23.53 0.15 -7.97 16 20 C -0.03 -0.89 9.80 21.74 0.21 -0.67 16 21 C -0.15 -3.79 5.88 -21.47 -0.13 -3.92 16 22 C -0.02 -0.33 10.16 22.71 0.23 -0.10 16 23 C -0.16 -1.94 10.01 22.00 0.22 -1.72 16 24 C 0.14 2.39 11.18 84.90 0.95 3.34 16 25 N -0.50 -13.68 10.39 -190.75 -1.98 -15.66 16 26 C 0.04 1.13 7.66 84.92 0.65 1.78 16 27 S 0.16 5.43 22.25 -56.49 -1.26 4.17 16 28 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.02 1.03 4.84 -2.38 -0.01 1.02 16 30 H 0.06 3.18 6.30 -2.39 -0.02 3.17 16 31 H 0.05 2.91 5.84 -2.39 -0.01 2.89 16 32 H 0.02 1.02 6.43 -2.38 -0.02 1.00 16 33 H 0.24 13.31 8.31 -92.70 -0.77 12.54 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.05 1.52 6.66 -2.39 -0.02 1.51 16 36 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.05 2.00 6.92 -2.38 -0.02 1.99 16 39 H 0.41 16.17 6.94 -92.71 -0.64 15.53 16 40 H 0.17 4.14 7.96 -2.91 -0.02 4.12 16 41 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.19 0.45 8.06 -2.91 -0.02 0.43 16 43 H 0.20 1.73 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -66.33 360.72 2.57 -63.77 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.41 Total: 21.33 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 6.41 Total: 9.08 kcal Atomic # 7 Polarization: -115.39 SS G_CDS: -4.96 Total: -120.35 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.07 Total: -23.28 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -1.26 Total: 4.17 kcal Total: -66.33 2.57 -63.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156188764.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.728 kcal (2) G-P(sol) polarization free energy of solvation -66.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds