Wall clock time and date at job start Tue Mar 31 2020 19:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45200 * 109.46996 * 2 1 4 4 C 1.34229 * 117.00002 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99925 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00336 * 179.97438 * 4 3 2 7 7 N 1.46897 * 109.47001 * 180.02562 * 6 4 3 8 8 C 1.46902 * 110.99865 * 72.44498 * 7 6 4 9 9 C 1.50700 * 109.46864 * 193.95232 * 8 7 6 10 10 H 1.07999 * 119.99952 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99934 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99959 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 120.00006 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.47128 * 90.00212 * 13 11 9 15 15 H 1.48500 * 109.47325 * 210.00585 * 13 11 9 16 16 H 1.48503 * 109.47303 * 330.00878 * 13 11 9 17 17 C 1.37862 * 110.99468 * 196.38970 * 7 6 4 18 18 N 1.32671 * 120.91146 * 294.89049 * 17 7 6 19 19 C 1.32327 * 121.49817 * 180.30411 * 18 17 7 20 20 N 1.31199 * 122.96454 * 359.43172 * 19 18 17 21 21 C 1.34145 * 120.45767 * 0.27755 * 20 19 18 22 22 C 1.40061 * 121.96983 * 180.02562 * 21 20 19 23 23 C 1.36568 * 119.56899 * 179.97438 * 22 21 20 24 24 F 1.35100 * 119.51089 * 180.02562 * 23 22 21 25 25 C 1.39465 * 120.97612 * 0.03871 * 23 22 21 26 26 C 1.36312 * 120.86556 * 359.96184 * 25 23 22 27 27 C 1.39983 * 119.53550 * 0.02562 * 26 25 23 28 28 H 1.09004 * 109.46899 * 299.99271 * 1 2 3 29 29 H 1.08992 * 109.47210 * 59.99922 * 1 2 3 30 30 H 1.08996 * 109.47105 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46992 * 240.00007 * 2 1 3 32 32 H 1.09005 * 109.46958 * 120.00165 * 2 1 3 33 33 H 1.09001 * 109.46528 * 59.99974 * 6 4 3 34 34 H 1.09004 * 109.47036 * 300.00536 * 6 4 3 35 35 H 1.09002 * 109.46631 * 313.94636 * 8 7 6 36 36 H 1.08991 * 109.47442 * 73.94707 * 8 7 6 37 37 H 0.97002 * 119.99742 * 179.97438 * 12 11 9 38 38 H 1.07995 * 118.51632 * 179.71261 * 19 18 17 39 39 H 1.07995 * 120.21415 * 359.97438 * 22 21 20 40 40 H 1.08000 * 119.56904 * 179.97438 * 25 23 22 41 41 H 1.08001 * 120.23583 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9208 2.9374 0.0000 7 7 5.3877 2.8604 0.0001 8 6 5.8918 2.4192 -1.3073 9 6 7.3404 2.0238 -1.1796 10 1 7.8370 2.0937 -0.2231 11 6 8.0321 1.5738 -2.2842 12 7 9.2964 1.2292 -2.1729 13 14 7.1733 1.4536 -3.9388 14 1 7.3298 2.7354 -4.6720 15 1 7.7778 0.3528 -4.7314 16 1 5.7296 1.1769 -3.7283 17 6 5.9456 4.0678 0.3628 18 7 5.7988 5.1431 -0.4002 19 6 6.3342 6.3062 -0.0663 20 7 7.0298 6.4829 1.0320 21 6 7.2350 5.4626 1.8784 22 6 7.9719 5.6157 3.0596 23 6 8.1501 4.5435 3.8865 24 9 8.8607 4.6926 5.0258 25 6 7.6096 3.2969 3.5721 26 6 6.8876 3.1156 2.4301 27 6 6.6870 4.1951 1.5619 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.5843 3.4700 0.8895 34 1 3.5852 3.4691 -0.8905 35 1 5.3105 1.5635 -1.6508 36 1 5.7993 3.2334 -2.0260 37 1 9.7828 0.9123 -2.9500 38 1 6.1883 7.1492 -0.7254 39 1 8.3965 6.5753 3.3148 40 1 7.7649 2.4643 4.2422 41 1 6.4740 2.1456 2.1964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157151698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:16 Heat of formation + Delta-G solvation = -38.424119 kcal Electronic energy + Delta-G solvation = -28612.667475 eV Core-core repulsion = 24408.398720 eV Total energy + Delta-G solvation = -4204.268755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.95872 -41.24945 -40.23329 -37.84325 -37.01786 -36.08453 -33.04988 -32.51151 -31.80727 -30.80338 -30.11191 -29.00348 -26.72883 -24.34594 -23.94104 -23.15163 -22.41273 -21.33967 -20.52201 -18.77569 -18.02380 -17.67846 -16.96338 -16.72232 -16.54031 -16.15893 -15.99955 -15.67850 -15.46566 -15.04649 -14.52921 -14.15336 -14.03125 -13.94927 -13.74800 -13.31490 -13.23479 -12.93575 -12.81862 -12.65550 -12.41548 -12.15417 -11.76949 -11.72813 -11.63100 -11.57875 -10.90052 -10.80758 -10.67621 -10.48513 -10.37297 -10.22343 -9.94548 -9.50633 -9.09330 -8.86808 -8.67594 -8.28308 -8.19494 -6.13784 -4.12072 0.33278 0.83086 1.96123 2.46913 2.61937 3.00469 3.23870 3.30811 3.31891 3.84636 3.98553 4.19934 4.34688 4.40512 4.56108 4.75726 4.83303 4.84490 4.93962 4.95792 5.01650 5.17412 5.20040 5.21486 5.38697 5.42623 5.48128 5.60261 5.66197 5.80317 5.82619 6.03943 6.14445 6.26790 6.34492 6.49768 6.55341 6.74878 6.80127 7.11982 7.24167 7.48469 7.64102 8.03676 8.34418 8.43778 8.90473 9.45180 10.98845 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.008218 B = 0.004943 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3406.136961 B = 5663.250623 C = 7427.751668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.366 6.366 4 C 0.457 3.543 5 O -0.466 6.466 6 C 0.071 3.929 7 N -0.474 5.474 8 C 0.165 3.835 9 C -0.512 4.512 10 H 0.080 0.920 11 C 0.075 3.925 12 N -0.892 5.892 13 Si 0.872 3.128 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.267 1.267 17 C 0.445 3.555 18 N -0.565 5.565 19 C 0.326 3.674 20 N -0.527 5.527 21 C 0.191 3.809 22 C -0.159 4.159 23 C 0.146 3.854 24 F -0.136 7.136 25 C -0.177 4.177 26 C 0.000 4.000 27 C -0.150 4.150 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.011 0.989 37 H 0.265 0.735 38 H 0.193 0.807 39 H 0.148 0.852 40 H 0.142 0.858 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.538 4.294 8.423 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.284 6.284 4 C 0.297 3.703 5 O -0.349 6.349 6 C -0.058 4.058 7 N -0.198 5.198 8 C 0.041 3.959 9 C -0.550 4.550 10 H 0.098 0.902 11 C -0.127 4.127 12 N -0.530 5.530 13 Si 0.699 3.301 14 H -0.201 1.201 15 H -0.209 1.209 16 H -0.191 1.191 17 C 0.197 3.803 18 N -0.283 5.283 19 C 0.036 3.964 20 N -0.242 5.242 21 C 0.063 3.937 22 C -0.179 4.179 23 C 0.124 3.876 24 F -0.114 7.114 25 C -0.196 4.196 26 C -0.020 4.020 27 C -0.156 4.156 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.126 0.874 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.029 0.971 37 H 0.075 0.925 38 H 0.209 0.791 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.074 4.417 8.148 16.026 hybrid contribution -0.058 -0.460 -0.976 1.081 sum -13.132 3.957 7.172 15.477 Atomic orbital electron populations 1.21794 0.92886 1.02763 1.03353 1.22973 0.94997 0.80449 1.02763 1.86456 1.24807 1.32257 1.84905 1.23390 0.80398 0.92671 0.73857 1.90765 1.59747 1.42254 1.42173 1.21450 0.88286 0.91125 1.04905 1.59546 1.03121 1.20659 1.36498 1.20519 0.98142 0.95568 0.81624 1.20834 0.92356 1.44050 0.97747 0.90184 1.24794 0.94667 0.94666 0.98617 1.69876 1.08651 1.43978 1.30536 0.86902 0.80386 0.78192 0.84578 1.20089 1.20888 1.19142 1.20008 0.86103 0.87553 0.86647 1.68518 1.25236 1.00705 1.33826 1.24636 0.87257 0.93711 0.90840 1.68740 1.17712 1.32424 1.05343 1.18435 0.93540 0.88365 0.93326 1.20401 1.03673 0.99616 0.94167 1.17439 0.92800 0.94416 0.82962 1.91512 1.75762 1.96401 1.47756 1.20960 1.02142 0.96321 1.00158 1.21018 0.92213 0.98897 0.89875 1.19243 1.03062 0.95726 0.97578 0.91601 0.91572 0.90411 0.91220 0.91205 0.87433 0.89214 0.93479 0.97149 0.92473 0.79062 0.83468 0.84030 0.82432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.29 37.16 0.38 -0.81 16 2 C 0.06 0.70 6.19 37.16 0.23 0.93 16 3 O -0.37 -5.02 10.22 -39.26 -0.40 -5.42 16 4 C 0.46 7.46 7.56 36.00 0.27 7.74 16 5 O -0.47 -9.31 14.75 -18.75 -0.28 -9.58 16 6 C 0.07 1.10 5.41 -4.98 -0.03 1.07 16 7 N -0.47 -9.29 3.35 -175.42 -0.59 -9.88 16 8 C 0.17 3.89 3.33 -4.98 -0.02 3.87 16 9 C -0.51 -14.27 9.35 -34.44 -0.32 -14.59 16 10 H 0.08 2.42 7.99 -52.49 -0.42 2.01 16 11 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 12 N -0.89 -27.17 13.96 55.43 0.77 -26.39 16 13 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 17 C 0.45 8.51 4.64 -154.96 -0.72 7.79 16 18 N -0.56 -10.33 9.64 -13.56 -0.13 -10.47 16 19 C 0.33 5.27 12.22 -92.20 -1.13 4.14 16 20 N -0.53 -8.95 10.45 -12.66 -0.13 -9.08 16 21 C 0.19 3.30 6.61 -84.86 -0.56 2.74 16 22 C -0.16 -2.39 9.97 -39.50 -0.39 -2.78 16 23 C 0.15 2.10 7.24 -39.73 -0.29 1.82 16 24 F -0.14 -1.86 17.24 2.25 0.04 -1.82 16 25 C -0.18 -2.52 9.93 -39.82 -0.40 -2.92 16 26 C 0.00 0.00 9.58 -39.62 -0.38 -0.38 16 27 C -0.15 -2.71 5.76 -106.67 -0.61 -3.33 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.83 8.13 -51.93 -0.42 0.40 16 32 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 33 H 0.11 1.38 7.96 -51.93 -0.41 0.96 16 34 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 35 H 0.05 1.15 5.47 -51.93 -0.28 0.87 16 36 H 0.01 0.26 7.00 -51.93 -0.36 -0.11 16 37 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.19 2.32 8.06 -52.49 -0.42 1.89 16 39 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 40 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.16 2.63 7.65 -52.49 -0.40 2.23 16 LS Contribution 358.67 15.07 5.41 5.41 Total: -1.00 -33.20 358.67 -8.88 -42.08 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -4.85 Total: 0.98 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -4.06 Total: 7.36 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.08 Total: -55.82 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.68 Total: -15.00 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.20 -8.88 -42.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157151698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.655 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds