Wall clock time and date at job start Tue Mar 31 2020 19:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45200 * 109.46996 * 2 1 4 4 C 1.34229 * 117.00002 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99925 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00336 * 179.97438 * 4 3 2 7 7 N 1.46897 * 109.47001 * 180.02562 * 6 4 3 8 8 C 1.46902 * 110.99865 * 72.44498 * 7 6 4 9 9 C 1.50700 * 109.46864 * 193.95232 * 8 7 6 10 10 H 1.07999 * 119.99952 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99934 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99959 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 120.00006 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.47128 * 90.00212 * 13 11 9 15 15 H 1.48500 * 109.47325 * 210.00585 * 13 11 9 16 16 H 1.48503 * 109.47303 * 330.00878 * 13 11 9 17 17 C 1.37862 * 110.99468 * 196.38970 * 7 6 4 18 18 N 1.32671 * 120.91146 * 294.89049 * 17 7 6 19 19 C 1.32327 * 121.49817 * 180.30411 * 18 17 7 20 20 N 1.31199 * 122.96454 * 359.43172 * 19 18 17 21 21 C 1.34145 * 120.45767 * 0.27755 * 20 19 18 22 22 C 1.40061 * 121.96983 * 180.02562 * 21 20 19 23 23 C 1.36568 * 119.56899 * 179.97438 * 22 21 20 24 24 F 1.35100 * 119.51089 * 180.02562 * 23 22 21 25 25 C 1.39465 * 120.97612 * 0.03871 * 23 22 21 26 26 C 1.36312 * 120.86556 * 359.96184 * 25 23 22 27 27 C 1.39983 * 119.53550 * 0.02562 * 26 25 23 28 28 H 1.09004 * 109.46899 * 299.99271 * 1 2 3 29 29 H 1.08992 * 109.47210 * 59.99922 * 1 2 3 30 30 H 1.08996 * 109.47105 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46992 * 240.00007 * 2 1 3 32 32 H 1.09005 * 109.46958 * 120.00165 * 2 1 3 33 33 H 1.09001 * 109.46528 * 59.99974 * 6 4 3 34 34 H 1.09004 * 109.47036 * 300.00536 * 6 4 3 35 35 H 1.09002 * 109.46631 * 313.94636 * 8 7 6 36 36 H 1.08991 * 109.47442 * 73.94707 * 8 7 6 37 37 H 0.97002 * 119.99742 * 179.97438 * 12 11 9 38 38 H 1.07995 * 118.51632 * 179.71261 * 19 18 17 39 39 H 1.07995 * 120.21415 * 359.97438 * 22 21 20 40 40 H 1.08000 * 119.56904 * 179.97438 * 25 23 22 41 41 H 1.08001 * 120.23583 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9208 2.9374 0.0000 7 7 5.3877 2.8604 0.0001 8 6 5.8918 2.4192 -1.3073 9 6 7.3404 2.0238 -1.1796 10 1 7.8370 2.0937 -0.2231 11 6 8.0321 1.5738 -2.2842 12 7 9.2964 1.2292 -2.1729 13 14 7.1733 1.4536 -3.9388 14 1 7.3298 2.7354 -4.6720 15 1 7.7778 0.3528 -4.7314 16 1 5.7296 1.1769 -3.7283 17 6 5.9456 4.0678 0.3628 18 7 5.7988 5.1431 -0.4002 19 6 6.3342 6.3062 -0.0663 20 7 7.0298 6.4829 1.0320 21 6 7.2350 5.4626 1.8784 22 6 7.9719 5.6157 3.0596 23 6 8.1501 4.5435 3.8865 24 9 8.8607 4.6926 5.0258 25 6 7.6096 3.2969 3.5721 26 6 6.8876 3.1156 2.4301 27 6 6.6870 4.1951 1.5619 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.5843 3.4700 0.8895 34 1 3.5852 3.4691 -0.8905 35 1 5.3105 1.5635 -1.6508 36 1 5.7993 3.2334 -2.0260 37 1 9.7828 0.9123 -2.9500 38 1 6.1883 7.1492 -0.7254 39 1 8.3965 6.5753 3.3148 40 1 7.7649 2.4643 4.2422 41 1 6.4740 2.1456 2.1964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157151698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:15 Heat of formation + Delta-G solvation = -57.727925 kcal Electronic energy + Delta-G solvation = -28613.504551 eV Core-core repulsion = 24408.398720 eV Total energy + Delta-G solvation = -4205.105831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.10904 -42.57437 -41.48996 -39.20217 -38.28794 -37.38646 -34.90820 -34.10558 -32.70664 -32.07196 -31.37427 -30.72343 -28.23513 -25.63771 -25.32765 -24.24180 -23.91357 -22.67527 -21.83320 -20.04398 -19.49520 -18.95817 -18.81489 -18.02426 -17.74218 -17.44356 -17.26603 -16.89908 -16.77180 -16.53132 -16.02740 -15.50361 -15.35517 -15.22060 -15.15143 -14.61897 -14.49415 -14.40940 -14.08787 -13.96942 -13.60306 -13.57097 -13.01015 -12.98372 -12.84805 -12.75810 -12.51226 -12.46907 -12.04749 -11.91401 -11.85817 -11.70801 -11.49117 -11.39263 -10.84720 -10.44964 -10.12186 -9.79288 -9.48732 -8.33274 -6.36082 -0.97066 -0.44012 0.65389 1.18892 1.28790 1.30333 1.39594 1.45222 1.76198 2.28460 2.46791 2.76506 2.89983 3.02031 3.15127 3.30865 3.53547 3.63452 3.73628 3.86336 3.98398 4.05007 4.12504 4.18035 4.19506 4.23998 4.38646 4.57773 4.63567 4.79127 4.85563 4.87382 4.94703 4.95601 5.05484 5.15069 5.19805 5.34134 5.46819 5.54773 5.59019 5.89755 6.06942 6.30182 6.66729 6.79871 7.02443 7.25285 8.82896 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.008218 B = 0.004943 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3406.136961 B = 5663.250623 C = 7427.751668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 O -0.359 6.359 4 C 0.464 3.536 5 O -0.510 6.510 6 C 0.070 3.930 7 N -0.482 5.482 8 C 0.183 3.817 9 C -0.512 4.512 10 H 0.042 0.958 11 C 0.016 3.984 12 N -0.941 5.941 13 Si 0.936 3.064 14 H -0.265 1.265 15 H -0.279 1.279 16 H -0.252 1.252 17 C 0.427 3.573 18 N -0.575 5.575 19 C 0.319 3.681 20 N -0.529 5.529 21 C 0.175 3.825 22 C -0.157 4.157 23 C 0.153 3.847 24 F -0.127 7.127 25 C -0.162 4.162 26 C -0.017 4.017 27 C -0.166 4.166 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.137 0.863 34 H 0.104 0.896 35 H 0.040 0.960 36 H 0.010 0.990 37 H 0.267 0.733 38 H 0.230 0.770 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.387 5.286 8.624 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.306 3.694 5 O -0.397 6.397 6 C -0.057 4.057 7 N -0.206 5.206 8 C 0.057 3.943 9 C -0.550 4.550 10 H 0.060 0.940 11 C -0.182 4.182 12 N -0.581 5.581 13 Si 0.759 3.241 14 H -0.190 1.190 15 H -0.205 1.205 16 H -0.176 1.176 17 C 0.178 3.822 18 N -0.293 5.293 19 C 0.029 3.971 20 N -0.244 5.244 21 C 0.047 3.953 22 C -0.177 4.177 23 C 0.130 3.870 24 F -0.106 7.106 25 C -0.181 4.181 26 C -0.038 4.038 27 C -0.172 4.172 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.155 0.845 34 H 0.122 0.878 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.076 0.924 38 H 0.246 0.754 39 H 0.184 0.816 40 H 0.186 0.814 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.970 5.435 8.371 17.992 hybrid contribution 0.515 -0.738 -0.855 1.242 sum -14.454 4.697 7.516 16.955 Atomic orbital electron populations 1.21810 0.89878 1.04390 1.03867 1.23307 0.97288 0.79123 1.02427 1.86460 1.23127 1.33839 1.84134 1.23513 0.80944 0.92374 0.72563 1.90752 1.60892 1.43547 1.44496 1.21604 0.85902 0.91263 1.06974 1.59273 1.05445 1.21697 1.34210 1.20103 0.95334 0.95085 0.83734 1.21050 0.94523 1.43297 0.96115 0.94002 1.25678 0.95289 0.94518 1.02750 1.70024 1.10444 1.45897 1.31769 0.85885 0.79892 0.78581 0.79694 1.19025 1.20486 1.17625 1.20083 0.86993 0.87600 0.87509 1.68511 1.25667 1.01124 1.33990 1.25373 0.86575 0.94058 0.91108 1.68793 1.17789 1.32256 1.05571 1.18722 0.94141 0.88223 0.94231 1.20607 1.02964 1.00704 0.93402 1.17405 0.92411 0.94201 0.82982 1.91538 1.75459 1.96343 1.47235 1.21209 1.00237 0.97190 0.99436 1.20964 0.93709 0.98262 0.90841 1.19431 1.03328 0.96634 0.97853 0.90850 0.91246 0.88218 0.92029 0.91251 0.84485 0.87780 0.94163 0.97242 0.92413 0.75362 0.81564 0.81357 0.83478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 10.29 71.98 0.74 -1.19 16 2 C 0.05 1.12 6.19 71.98 0.45 1.57 16 3 O -0.36 -9.38 10.22 -51.41 -0.53 -9.91 16 4 C 0.46 14.94 7.56 71.24 0.54 15.48 16 5 O -0.51 -20.66 14.75 21.96 0.32 -20.34 16 6 C 0.07 2.11 5.41 85.56 0.46 2.58 16 7 N -0.48 -19.03 3.35 -708.92 -2.37 -21.40 16 8 C 0.18 8.65 3.33 85.56 0.28 8.93 16 9 C -0.51 -29.37 9.35 25.60 0.24 -29.13 16 10 H 0.04 2.66 7.99 -2.91 -0.02 2.64 16 11 C 0.02 0.93 5.47 84.65 0.46 1.39 16 12 N -0.94 -59.04 13.96 21.45 0.30 -58.74 16 13 Si 0.94 44.57 27.47 68.60 1.88 46.46 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 16 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16 17 C 0.43 16.32 4.64 133.97 0.62 16.94 16 18 N -0.57 -20.58 9.64 -196.80 -1.90 -22.48 16 19 C 0.32 9.87 12.22 180.90 2.21 12.08 16 20 N -0.53 -17.37 10.45 -193.97 -2.03 -19.40 16 21 C 0.17 5.92 6.61 40.08 0.26 6.18 16 22 C -0.16 -4.51 9.97 22.32 0.22 -4.29 16 23 C 0.15 4.14 7.24 22.18 0.16 4.30 16 24 F -0.13 -3.20 17.24 44.97 0.78 -2.43 16 25 C -0.16 -4.47 9.93 22.12 0.22 -4.25 16 26 C -0.02 -0.57 9.58 22.24 0.21 -0.36 16 27 C -0.17 -6.05 5.76 -21.19 -0.12 -6.18 16 28 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 32 H 0.07 1.50 8.13 -2.38 -0.02 1.48 16 33 H 0.14 3.30 7.96 -2.39 -0.02 3.28 16 34 H 0.10 2.89 8.05 -2.39 -0.02 2.87 16 35 H 0.04 1.98 5.47 -2.39 -0.01 1.96 16 36 H 0.01 0.46 7.00 -2.39 -0.02 0.45 16 37 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.23 4.99 8.06 -2.91 -0.02 4.97 16 39 H 0.17 4.05 8.06 -2.91 -0.02 4.03 16 40 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 41 H 0.15 5.14 7.65 -2.91 -0.02 5.12 16 Total: -1.00 -73.62 358.67 4.44 -69.18 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 1.01 Total: 15.00 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: 6.97 Total: 24.05 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -6.00 Total: -122.02 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.20 Total: -30.25 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.78 Total: -2.43 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.46 kcal Total: -73.62 4.44 -69.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157151698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.452 kcal (2) G-P(sol) polarization free energy of solvation -73.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds