Wall clock time and date at job start Tue Mar 31 2020 19:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45202 * 109.47270 * 2 1 4 4 C 1.34232 * 116.99968 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99745 * 0.02562 * 4 3 2 6 6 C 1.50691 * 119.99874 * 180.02562 * 4 3 2 7 7 N 1.46895 * 109.47210 * 183.93865 * 6 4 3 8 8 C 1.46904 * 110.99860 * 64.02683 * 7 6 4 9 9 C 1.50700 * 109.47353 * 71.94685 * 8 7 6 10 10 H 1.07999 * 119.99722 * 355.15830 * 9 8 7 11 11 C 1.37880 * 120.00020 * 175.15494 * 9 8 7 12 12 N 1.31512 * 119.99976 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 119.99937 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47186 * 60.00007 * 13 11 9 15 15 H 1.48501 * 109.47529 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47227 * 300.00099 * 13 11 9 17 17 C 1.37878 * 111.00045 * 300.07379 * 7 6 4 18 18 N 1.32628 * 120.91237 * 108.54105 * 17 7 6 19 19 C 1.32349 * 121.49249 * 180.02562 * 18 17 7 20 20 N 1.31181 * 122.97189 * 0.26523 * 19 18 17 21 21 C 1.34149 * 120.46401 * 359.45031 * 20 19 18 22 22 C 1.40155 * 121.95972 * 180.26491 * 21 20 19 23 23 C 1.36284 * 119.61661 * 180.30102 * 22 21 20 24 24 C 1.39419 * 121.00543 * 359.97438 * 23 22 21 25 25 F 1.35098 * 119.57532 * 179.97438 * 24 23 22 26 26 C 1.36582 * 120.84185 * 359.97438 * 24 23 22 27 27 C 1.39913 * 119.48449 * 0.02562 * 26 24 23 28 28 H 1.09008 * 109.47204 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47163 * 300.00081 * 1 2 3 30 30 H 1.09001 * 109.46749 * 60.00326 * 1 2 3 31 31 H 1.09002 * 109.47285 * 239.99594 * 2 1 3 32 32 H 1.09004 * 109.46954 * 120.00154 * 2 1 3 33 33 H 1.09002 * 109.47509 * 63.93828 * 6 4 3 34 34 H 1.09003 * 109.47084 * 303.93851 * 6 4 3 35 35 H 1.09009 * 109.46849 * 191.94828 * 8 7 6 36 36 H 1.09001 * 109.46923 * 311.94192 * 8 7 6 37 37 H 0.97003 * 120.00041 * 179.97438 * 12 11 9 38 38 H 1.07994 * 118.51651 * 179.97438 * 19 18 17 39 39 H 1.07998 * 120.19426 * 0.27111 * 22 21 20 40 40 H 1.08000 * 119.49940 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.25041 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9373 0.0012 7 7 5.3847 2.8617 -0.0935 8 6 5.7996 2.2677 -1.3714 9 6 5.5464 3.2486 -2.4871 10 1 5.0485 4.1845 -2.2806 11 6 5.9503 2.9512 -3.7714 12 7 6.5561 1.8114 -4.0229 13 14 5.6357 4.1667 -5.1544 14 1 6.3196 5.4494 -4.8512 15 1 6.1614 3.6140 -6.4285 16 1 4.1752 4.4029 -5.2832 17 6 5.9132 2.1628 0.9710 18 7 6.4238 0.9501 0.8039 19 6 6.9335 0.2688 1.8176 20 7 6.9668 0.7322 3.0443 21 6 6.4822 1.9514 3.3243 22 6 6.5068 2.4794 4.6223 23 6 5.9956 3.7213 4.8540 24 6 5.4477 4.4771 3.8184 25 9 4.9485 5.7047 4.0808 26 6 5.4093 3.9922 2.5422 27 6 5.9264 2.7203 2.2729 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.6421 3.4454 0.9244 34 1 3.5297 3.4926 -0.8514 35 1 6.8623 2.0280 -1.3325 36 1 5.2282 1.3571 -1.5513 37 1 6.8399 1.6020 -4.9265 38 1 7.3362 -0.7149 1.6270 39 1 6.9281 1.9054 5.4343 40 1 6.0152 4.1262 5.8550 41 1 4.9830 4.5860 1.7471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157151815.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:20 Heat of formation + Delta-G solvation = -35.376996 kcal Electronic energy + Delta-G solvation = -29148.158502 eV Core-core repulsion = 24944.021880 eV Total energy + Delta-G solvation = -4204.136622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.91489 -41.40453 -40.14823 -37.84083 -37.07120 -35.78591 -33.17539 -32.35584 -31.66996 -31.38062 -29.77354 -28.24858 -26.70026 -24.31457 -24.08373 -23.14810 -22.44438 -21.49710 -20.50641 -18.64841 -18.31307 -17.51702 -17.23795 -16.48756 -16.39783 -15.88945 -15.71559 -15.64205 -15.23657 -14.99486 -14.58279 -14.37143 -14.11495 -13.92517 -13.76927 -13.54909 -13.17369 -13.03255 -12.76901 -12.27799 -12.17221 -11.80300 -11.59696 -11.54596 -11.40523 -11.24658 -11.01228 -10.88744 -10.64872 -10.59763 -10.34392 -10.27460 -10.10829 -9.51374 -9.19411 -8.83080 -8.67549 -8.39907 -7.72399 -6.10712 -4.16245 0.29841 0.77995 1.89017 2.55500 2.88814 2.97604 3.27494 3.32769 3.33895 3.81057 4.13236 4.23568 4.27766 4.39000 4.48371 4.64679 4.85004 4.89397 4.95383 4.98982 5.07756 5.16200 5.25313 5.30954 5.38687 5.51630 5.69008 5.71416 5.77019 5.78378 5.87057 5.91062 5.93796 5.98850 6.37172 6.57323 6.67690 6.80504 7.15149 7.41205 7.56685 7.66663 7.94050 8.10020 8.22425 8.52805 8.89060 9.47441 10.98893 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.008904 B = 0.004780 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.925753 B = 5855.904747 C = 6937.853081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.363 6.363 4 C 0.423 3.577 5 O -0.473 6.473 6 C 0.075 3.925 7 N -0.453 5.453 8 C 0.190 3.810 9 C -0.530 4.530 10 H 0.064 0.936 11 C 0.063 3.937 12 N -0.886 5.886 13 Si 0.899 3.101 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.409 3.591 18 N -0.513 5.513 19 C 0.326 3.674 20 N -0.539 5.539 21 C 0.161 3.839 22 C -0.080 4.080 23 C -0.114 4.114 24 C 0.076 3.924 25 F -0.139 7.139 26 C -0.093 4.093 27 C -0.148 4.148 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.142 0.858 35 H 0.049 0.951 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.191 0.809 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.461 0.515 14.782 16.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.280 6.280 4 C 0.263 3.737 5 O -0.358 6.358 6 C -0.053 4.053 7 N -0.170 5.170 8 C 0.068 3.932 9 C -0.568 4.568 10 H 0.082 0.918 11 C -0.140 4.140 12 N -0.524 5.524 13 Si 0.727 3.273 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.201 1.201 17 C 0.157 3.843 18 N -0.231 5.231 19 C 0.036 3.964 20 N -0.256 5.256 21 C 0.033 3.967 22 C -0.099 4.099 23 C -0.136 4.136 24 C 0.057 3.943 25 F -0.118 7.118 26 C -0.115 4.115 27 C -0.155 4.155 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.126 0.874 34 H 0.160 0.840 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.208 0.792 39 H 0.164 0.836 40 H 0.159 0.841 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.606 -0.354 14.527 15.962 hybrid contribution -0.561 0.693 -0.844 1.227 sum -7.167 0.339 13.683 15.450 Atomic orbital electron populations 1.21783 0.92933 1.02632 1.03353 1.22926 0.95015 0.80877 1.02397 1.86497 1.25086 1.31935 1.84493 1.25097 0.80845 0.94375 0.73414 1.90813 1.59343 1.42531 1.43097 1.22090 0.85666 0.90840 1.06748 1.59582 1.05570 1.46704 1.05152 1.20112 0.98528 0.94723 0.79882 1.21091 1.39866 1.03947 0.91923 0.91767 1.24940 0.94917 0.95454 0.98720 1.69975 1.38907 1.22387 1.21122 0.86545 0.78598 0.81184 0.81009 1.20051 1.21243 1.20128 1.20507 0.88801 0.86001 0.88943 1.68766 1.13387 1.05452 1.35492 1.24805 0.89491 0.99076 0.83020 1.68795 1.20887 1.12801 1.23108 1.18870 0.93993 0.90494 0.93376 1.20528 0.99475 0.94721 0.95139 1.20934 0.98763 0.94686 0.99216 1.17305 1.01179 0.81927 0.93917 1.91507 1.85372 1.40158 1.94716 1.20965 0.99249 0.95268 0.95977 1.18940 1.05173 0.96536 0.94878 0.90563 0.91740 0.91402 0.91169 0.91863 0.87388 0.84021 0.93268 0.94658 0.92627 0.79226 0.83636 0.84066 0.82962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.29 37.16 0.38 -1.10 16 2 C 0.06 0.85 6.19 37.16 0.23 1.08 16 3 O -0.36 -5.87 10.22 -39.26 -0.40 -6.28 16 4 C 0.42 7.87 7.19 36.00 0.26 8.13 16 5 O -0.47 -10.18 11.50 -18.75 -0.22 -10.40 16 6 C 0.07 1.29 5.39 -4.98 -0.03 1.26 16 7 N -0.45 -9.31 4.17 -175.40 -0.73 -10.04 16 8 C 0.19 4.83 3.75 -4.97 -0.02 4.81 16 9 C -0.53 -14.04 8.62 -34.44 -0.30 -14.34 16 10 H 0.06 1.61 7.36 -52.49 -0.39 1.22 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 13 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 17 C 0.41 8.12 4.76 -154.95 -0.74 7.38 16 18 N -0.51 -10.68 7.20 -13.54 -0.10 -10.78 16 19 C 0.33 5.78 12.22 -92.20 -1.13 4.66 16 20 N -0.54 -9.10 10.45 -12.65 -0.13 -9.23 16 21 C 0.16 2.58 6.61 -84.84 -0.56 2.02 16 22 C -0.08 -0.98 10.00 -39.57 -0.40 -1.38 16 23 C -0.11 -1.26 9.92 -39.85 -0.40 -1.65 16 24 C 0.08 0.97 7.24 -39.74 -0.29 0.69 16 25 F -0.14 -1.75 17.25 2.25 0.04 -1.71 16 26 C -0.09 -1.35 8.49 -39.55 -0.34 -1.69 16 27 C -0.15 -2.51 5.65 -106.69 -0.60 -3.12 16 28 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 32 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 33 H 0.11 1.49 5.97 -51.93 -0.31 1.18 16 34 H 0.14 2.37 7.10 -51.93 -0.37 2.00 16 35 H 0.05 1.41 7.61 -51.92 -0.40 1.01 16 36 H 0.04 0.99 5.73 -51.93 -0.30 0.69 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 38 H 0.19 2.76 8.06 -52.49 -0.42 2.34 16 39 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 40 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 41 H 0.15 2.09 6.49 -52.49 -0.34 1.75 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -32.39 350.15 -9.17 -41.56 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -4.61 Total: 2.58 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: -4.01 Total: 8.37 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.23 Total: -55.19 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.62 Total: -16.68 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.39 -9.17 -41.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157151815.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.185 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds