Wall clock time and date at job start Tue Mar 31 2020 19:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45202 * 109.47270 * 2 1 4 4 C 1.34232 * 116.99968 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99745 * 0.02562 * 4 3 2 6 6 C 1.50691 * 119.99874 * 180.02562 * 4 3 2 7 7 N 1.46895 * 109.47210 * 183.93865 * 6 4 3 8 8 C 1.46904 * 110.99860 * 64.02683 * 7 6 4 9 9 C 1.50700 * 109.47353 * 71.94685 * 8 7 6 10 10 H 1.07999 * 119.99722 * 355.15830 * 9 8 7 11 11 C 1.37880 * 120.00020 * 175.15494 * 9 8 7 12 12 N 1.31512 * 119.99976 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 119.99937 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47186 * 60.00007 * 13 11 9 15 15 H 1.48501 * 109.47529 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47227 * 300.00099 * 13 11 9 17 17 C 1.37878 * 111.00045 * 300.07379 * 7 6 4 18 18 N 1.32628 * 120.91237 * 108.54105 * 17 7 6 19 19 C 1.32349 * 121.49249 * 180.02562 * 18 17 7 20 20 N 1.31181 * 122.97189 * 0.26523 * 19 18 17 21 21 C 1.34149 * 120.46401 * 359.45031 * 20 19 18 22 22 C 1.40155 * 121.95972 * 180.26491 * 21 20 19 23 23 C 1.36284 * 119.61661 * 180.30102 * 22 21 20 24 24 C 1.39419 * 121.00543 * 359.97438 * 23 22 21 25 25 F 1.35098 * 119.57532 * 179.97438 * 24 23 22 26 26 C 1.36582 * 120.84185 * 359.97438 * 24 23 22 27 27 C 1.39913 * 119.48449 * 0.02562 * 26 24 23 28 28 H 1.09008 * 109.47204 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47163 * 300.00081 * 1 2 3 30 30 H 1.09001 * 109.46749 * 60.00326 * 1 2 3 31 31 H 1.09002 * 109.47285 * 239.99594 * 2 1 3 32 32 H 1.09004 * 109.46954 * 120.00154 * 2 1 3 33 33 H 1.09002 * 109.47509 * 63.93828 * 6 4 3 34 34 H 1.09003 * 109.47084 * 303.93851 * 6 4 3 35 35 H 1.09009 * 109.46849 * 191.94828 * 8 7 6 36 36 H 1.09001 * 109.46923 * 311.94192 * 8 7 6 37 37 H 0.97003 * 120.00041 * 179.97438 * 12 11 9 38 38 H 1.07994 * 118.51651 * 179.97438 * 19 18 17 39 39 H 1.07998 * 120.19426 * 0.27111 * 22 21 20 40 40 H 1.08000 * 119.49940 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.25041 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9373 0.0012 7 7 5.3847 2.8617 -0.0935 8 6 5.7996 2.2677 -1.3714 9 6 5.5464 3.2486 -2.4871 10 1 5.0485 4.1845 -2.2806 11 6 5.9503 2.9512 -3.7714 12 7 6.5561 1.8114 -4.0229 13 14 5.6357 4.1667 -5.1544 14 1 6.3196 5.4494 -4.8512 15 1 6.1614 3.6140 -6.4285 16 1 4.1752 4.4029 -5.2832 17 6 5.9132 2.1628 0.9710 18 7 6.4238 0.9501 0.8039 19 6 6.9335 0.2688 1.8176 20 7 6.9668 0.7322 3.0443 21 6 6.4822 1.9514 3.3243 22 6 6.5068 2.4794 4.6223 23 6 5.9956 3.7213 4.8540 24 6 5.4477 4.4771 3.8184 25 9 4.9485 5.7047 4.0808 26 6 5.4093 3.9922 2.5422 27 6 5.9264 2.7203 2.2729 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.6421 3.4454 0.9244 34 1 3.5297 3.4926 -0.8514 35 1 6.8623 2.0280 -1.3325 36 1 5.2282 1.3571 -1.5513 37 1 6.8399 1.6020 -4.9265 38 1 7.3362 -0.7149 1.6270 39 1 6.9281 1.9054 5.4343 40 1 6.0152 4.1262 5.8550 41 1 4.9830 4.5860 1.7471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157151815.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:19 Heat of formation + Delta-G solvation = -54.205033 kcal Electronic energy + Delta-G solvation = -29148.974947 eV Core-core repulsion = 24944.021880 eV Total energy + Delta-G solvation = -4204.953067 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.95111 -42.75253 -41.52782 -39.19955 -38.30654 -37.25497 -35.01978 -33.89890 -32.74682 -32.56612 -30.97617 -29.94884 -28.32707 -25.71619 -25.33478 -24.39201 -23.90313 -22.84014 -21.91307 -19.87064 -19.62893 -18.94783 -18.64952 -18.14602 -17.73900 -17.25088 -17.07769 -16.87467 -16.59245 -16.34557 -16.10678 -15.71758 -15.31012 -15.26216 -15.12479 -14.72434 -14.46708 -14.19474 -14.05465 -13.64561 -13.51075 -13.12190 -12.98490 -12.81247 -12.74552 -12.66666 -12.54734 -12.45120 -12.24787 -12.16540 -11.82617 -11.79398 -11.57968 -11.42852 -10.64245 -10.32734 -10.20401 -10.02171 -9.08607 -8.20274 -6.33771 -0.91111 -0.39050 0.66237 1.10431 1.43146 1.46775 1.54151 1.62132 1.81200 2.29292 2.50823 2.93165 3.07117 3.10446 3.13601 3.26467 3.48409 3.60537 3.72651 3.85643 3.91449 3.97799 4.05299 4.18769 4.26713 4.31522 4.37726 4.68538 4.76540 4.82931 4.85086 4.87931 4.91769 4.98112 5.07603 5.16526 5.32577 5.40109 5.53548 5.60369 5.72940 5.90136 6.10732 6.28079 6.67102 6.79787 7.18157 7.35698 8.90478 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.008904 B = 0.004780 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.925753 B = 5855.904747 C = 6937.853081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.420 3.580 5 O -0.508 6.508 6 C 0.073 3.927 7 N -0.453 5.453 8 C 0.218 3.782 9 C -0.537 4.537 10 H 0.080 0.920 11 C 0.005 3.995 12 N -0.931 5.931 13 Si 0.973 3.027 14 H -0.266 1.266 15 H -0.289 1.289 16 H -0.260 1.260 17 C 0.386 3.614 18 N -0.554 5.554 19 C 0.308 3.692 20 N -0.532 5.532 21 C 0.139 3.861 22 C -0.073 4.073 23 C -0.093 4.093 24 C 0.095 3.905 25 F -0.132 7.132 26 C -0.112 4.112 27 C -0.153 4.153 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.003 0.997 36 H 0.001 0.999 37 H 0.264 0.736 38 H 0.208 0.792 39 H 0.175 0.825 40 H 0.186 0.814 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.009 2.784 17.232 19.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.261 3.739 5 O -0.396 6.396 6 C -0.054 4.054 7 N -0.171 5.171 8 C 0.094 3.906 9 C -0.575 4.575 10 H 0.098 0.902 11 C -0.194 4.194 12 N -0.571 5.571 13 Si 0.797 3.203 14 H -0.190 1.190 15 H -0.215 1.215 16 H -0.185 1.185 17 C 0.135 3.865 18 N -0.273 5.273 19 C 0.018 3.982 20 N -0.248 5.248 21 C 0.010 3.990 22 C -0.092 4.092 23 C -0.115 4.115 24 C 0.075 3.925 25 F -0.111 7.111 26 C -0.133 4.133 27 C -0.160 4.160 28 H 0.119 0.881 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.021 0.979 36 H 0.019 0.981 37 H 0.072 0.928 38 H 0.225 0.775 39 H 0.193 0.807 40 H 0.204 0.796 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.186 1.937 17.019 18.985 hybrid contribution -0.117 -0.006 -1.392 1.397 sum -8.303 1.930 15.627 17.801 Atomic orbital electron populations 1.21798 0.89459 1.04450 1.03972 1.23219 0.97643 0.79554 1.01556 1.86493 1.23676 1.33454 1.83904 1.25352 0.81412 0.94523 0.72564 1.90808 1.60292 1.43693 1.44760 1.22290 0.83942 0.90454 1.08757 1.59510 1.07504 1.46592 1.03465 1.19443 0.95138 0.93573 0.82469 1.21509 1.39247 1.04412 0.92364 0.90227 1.25947 0.94561 0.97231 1.01690 1.70151 1.40513 1.24772 1.21622 0.85388 0.79197 0.78628 0.77135 1.19039 1.21480 1.18499 1.20644 0.89628 0.86319 0.89929 1.68651 1.14582 1.06755 1.37284 1.25108 0.90323 0.99774 0.83045 1.68821 1.20312 1.13359 1.22298 1.19426 0.94355 0.90315 0.94874 1.20857 0.99005 0.95341 0.93969 1.21354 0.96080 0.93446 1.00586 1.17417 0.99604 0.81851 0.93606 1.91535 1.85116 1.39862 1.94580 1.20960 1.00482 0.94588 0.97275 1.18943 1.05863 0.97612 0.93607 0.88136 0.90563 0.91252 0.92901 0.91979 0.83664 0.83574 0.97866 0.98077 0.92771 0.77526 0.80746 0.79628 0.82643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 10.29 71.98 0.74 -1.82 16 2 C 0.05 1.50 6.19 71.98 0.45 1.95 16 3 O -0.36 -11.72 10.22 -51.43 -0.53 -12.25 16 4 C 0.42 16.21 7.19 71.23 0.51 16.72 16 5 O -0.51 -23.31 11.50 21.96 0.25 -23.06 16 6 C 0.07 2.55 5.39 85.56 0.46 3.01 16 7 N -0.45 -19.42 4.17 -708.84 -2.96 -22.37 16 8 C 0.22 11.80 3.75 85.56 0.32 12.12 16 9 C -0.54 -29.30 8.62 25.60 0.22 -29.08 16 10 H 0.08 3.99 7.36 -2.91 -0.02 3.96 16 11 C 0.00 0.26 5.46 84.66 0.46 0.72 16 12 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 13 Si 0.97 43.11 29.54 68.60 2.03 45.13 16 14 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 15 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 16 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 17 C 0.39 15.99 4.76 134.00 0.64 16.62 16 18 N -0.55 -24.69 7.20 -196.74 -1.42 -26.11 16 19 C 0.31 11.48 12.22 180.90 2.21 13.70 16 20 N -0.53 -17.98 10.45 -193.93 -2.03 -20.01 16 21 C 0.14 4.29 6.61 40.09 0.27 4.56 16 22 C -0.07 -1.54 10.00 22.28 0.22 -1.32 16 23 C -0.09 -1.60 9.92 22.10 0.22 -1.38 16 24 C 0.09 2.08 7.24 22.17 0.16 2.24 16 25 F -0.13 -2.80 17.25 44.97 0.78 -2.03 16 26 C -0.11 -3.05 8.49 22.29 0.19 -2.86 16 27 C -0.15 -5.18 5.65 -21.20 -0.12 -5.30 16 28 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.63 8.13 -2.39 -0.02 1.61 16 32 H 0.06 1.72 8.13 -2.38 -0.02 1.70 16 33 H 0.15 3.89 5.97 -2.39 -0.01 3.87 16 34 H 0.15 4.91 7.10 -2.39 -0.02 4.89 16 35 H 0.00 0.19 7.61 -2.38 -0.02 0.18 16 36 H 0.00 0.08 5.73 -2.39 -0.01 0.07 16 37 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.21 6.48 8.06 -2.91 -0.02 6.46 16 39 H 0.18 2.69 8.06 -2.91 -0.02 2.66 16 40 H 0.19 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.16 4.05 6.49 -2.91 -0.02 4.03 16 Total: -1.00 -75.36 350.15 4.44 -70.92 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 1.08 Total: 16.50 kcal Atomic # 6 Polarization: 22.93 SS G_CDS: 6.95 Total: 29.87 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -6.12 Total: -125.09 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -0.27 Total: -35.31 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -75.36 4.44 -70.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157151815.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.714 kcal (2) G-P(sol) polarization free energy of solvation -75.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds