Wall clock time and date at job start Tue Mar 31 2020 19:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45209 * 109.47142 * 2 1 4 4 C 1.34226 * 117.00099 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99959 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00022 * 179.97438 * 4 3 2 7 7 N 1.46502 * 109.47394 * 179.97438 * 6 4 3 8 8 C 1.46495 * 119.99859 * 270.00050 * 7 6 4 9 9 C 1.50700 * 109.47377 * 269.99647 * 8 7 6 10 10 H 1.07997 * 119.99623 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00044 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99784 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00099 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47388 * 89.99863 * 13 11 9 15 15 H 1.48502 * 109.47073 * 210.00341 * 13 11 9 16 16 H 1.48504 * 109.47164 * 329.99739 * 13 11 9 17 17 C 1.38681 * 119.99826 * 89.99623 * 7 6 4 18 18 C 1.40619 * 119.75496 * 4.98348 * 17 7 6 19 19 N 1.31099 * 120.61132 * 180.02562 * 18 17 7 20 20 C 1.33897 * 119.87632 * 359.97438 * 19 18 17 21 21 C 1.40546 * 120.94543 * 180.02562 * 20 19 18 22 22 C 1.36065 * 119.77837 * 179.97438 * 21 20 19 23 23 C 1.39584 * 120.91245 * 359.97438 * 22 21 20 24 24 F 1.35102 * 119.56055 * 180.02562 * 23 22 21 25 25 C 1.36347 * 120.87412 * 0.05052 * 23 22 21 26 26 C 1.40450 * 119.71798 * 359.94940 * 25 23 22 27 27 N 1.31952 * 119.75243 * 185.00107 * 17 7 6 28 28 H 1.09001 * 109.46947 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46917 * 300.00263 * 1 2 3 30 30 H 1.08992 * 109.47119 * 60.00047 * 1 2 3 31 31 H 1.08993 * 109.47443 * 239.99762 * 2 1 3 32 32 H 1.09001 * 109.47215 * 119.99136 * 2 1 3 33 33 H 1.08999 * 109.47043 * 59.99622 * 6 4 3 34 34 H 1.09003 * 109.47240 * 300.00037 * 6 4 3 35 35 H 1.08994 * 109.47380 * 30.00140 * 8 7 6 36 36 H 1.09008 * 109.46914 * 149.99569 * 8 7 6 37 37 H 0.96996 * 120.00009 * 179.97438 * 12 11 9 38 38 H 1.07994 * 119.69393 * 0.03798 * 18 17 7 39 39 H 1.08000 * 120.11130 * 0.02562 * 21 20 19 40 40 H 1.07999 * 119.54529 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.13754 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 7 5.3837 2.8609 -0.0010 8 6 6.1151 2.8232 1.2677 9 6 6.4403 4.2291 1.7021 10 1 6.1325 5.0669 1.0941 11 6 7.1307 4.4457 2.8758 12 7 7.4140 5.6727 3.2551 13 14 7.6636 2.9965 3.9270 14 1 9.0154 2.5495 3.5051 15 1 7.7008 3.4071 5.3537 16 1 6.6982 1.8809 3.7581 17 6 6.0762 2.8240 -1.2020 18 6 5.3784 2.9661 -2.4146 19 7 6.0161 2.9333 -3.5596 20 6 7.3441 2.7637 -3.5787 21 6 8.0504 2.7256 -4.7933 22 6 9.4000 2.5525 -4.7851 23 6 10.0976 2.4121 -3.5843 24 9 11.4377 2.2421 -3.6079 25 6 9.4445 2.4436 -2.3878 26 6 8.0515 2.6207 -2.3594 27 7 7.3849 2.6555 -1.1984 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.5850 3.4699 0.8888 34 1 3.5844 3.4694 -0.8912 35 1 5.5000 2.3412 2.0275 36 1 7.0394 2.2601 1.1377 37 1 7.8994 5.8252 4.0809 38 1 4.3073 3.1037 -2.4025 39 1 7.5238 2.8342 -5.7299 40 1 9.9390 2.5243 -5.7205 41 1 9.9961 2.3333 -1.4659 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157159604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:33 Heat of formation + Delta-G solvation = -42.364018 kcal Electronic energy + Delta-G solvation = -28106.631276 eV Core-core repulsion = 23902.191674 eV Total energy + Delta-G solvation = -4204.439602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.90192 -41.13876 -40.37242 -37.91690 -36.62071 -35.69510 -34.20516 -32.72843 -31.93139 -30.41460 -29.99636 -29.18439 -26.84070 -24.70748 -23.78716 -23.10612 -22.36796 -21.57451 -20.79444 -18.70488 -17.96671 -17.86111 -17.42819 -16.95374 -16.62612 -16.47280 -15.88725 -15.65237 -15.57162 -14.85790 -14.69608 -14.42172 -14.25950 -13.88168 -13.75346 -13.42422 -13.35394 -12.96519 -12.77101 -12.50542 -12.33074 -12.04058 -11.90132 -11.72830 -11.66810 -11.43095 -11.36629 -11.16062 -11.04605 -10.64673 -10.61033 -10.51269 -10.24476 -9.70098 -9.18368 -8.75700 -8.66765 -8.43074 -7.26142 -6.18383 -4.18811 0.39674 0.86753 2.15111 2.25881 2.44973 2.90892 3.21970 3.26333 3.32172 3.34679 4.14692 4.23467 4.28084 4.31829 4.45058 4.65011 4.68348 4.76146 4.84658 4.86737 4.92265 5.07183 5.10944 5.14240 5.23400 5.45398 5.46506 5.50664 5.59124 5.77158 5.79684 5.89277 5.98391 6.13573 6.23495 6.40738 6.48084 6.75470 6.84086 7.22121 7.42486 7.51598 7.71740 7.82470 8.26322 8.38923 8.83507 9.40727 10.94291 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.007604 B = 0.004800 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3681.166620 B = 5831.890527 C = 8676.940200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.360 6.360 4 C 0.435 3.565 5 O -0.493 6.493 6 C 0.131 3.869 7 N -0.549 5.549 8 C 0.224 3.776 9 C -0.533 4.533 10 H 0.077 0.923 11 C 0.078 3.922 12 N -0.893 5.893 13 Si 0.871 3.129 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.266 1.266 17 C 0.402 3.598 18 C 0.036 3.964 19 N -0.393 5.393 20 C -0.005 4.005 21 C -0.025 4.025 22 C -0.172 4.172 23 C 0.130 3.870 24 F -0.137 7.137 25 C -0.142 4.142 26 C 0.174 3.826 27 N -0.488 5.488 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.139 0.861 34 H 0.117 0.883 35 H 0.030 0.970 36 H 0.048 0.952 37 H 0.266 0.734 38 H 0.166 0.834 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.388 -8.259 -12.303 17.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.276 6.276 4 C 0.275 3.725 5 O -0.379 6.379 6 C 0.004 3.996 7 N -0.257 5.257 8 C 0.104 3.896 9 C -0.572 4.572 10 H 0.095 0.905 11 C -0.125 4.125 12 N -0.530 5.530 13 Si 0.698 3.302 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.191 1.191 17 C 0.151 3.849 18 C -0.147 4.147 19 N -0.105 5.105 20 C -0.130 4.130 21 C -0.045 4.045 22 C -0.193 4.193 23 C 0.108 3.892 24 F -0.115 7.115 25 C -0.163 4.163 26 C 0.046 3.954 27 N -0.212 5.212 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.156 0.844 34 H 0.135 0.865 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.183 0.817 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.974 -8.494 -12.061 16.769 hybrid contribution 0.615 -0.857 0.870 1.367 sum -7.359 -9.350 -11.191 16.335 Atomic orbital electron populations 1.21798 0.92669 1.02805 1.03570 1.22993 0.95247 0.80538 1.02536 1.86509 1.24616 1.32211 1.84308 1.24909 0.80608 0.94056 0.72896 1.90699 1.60334 1.42865 1.43997 1.21029 0.80922 0.89957 1.07688 1.46411 1.02644 1.71968 1.04697 1.19855 0.92642 0.98619 0.78450 1.21262 1.37384 0.91143 1.07407 0.90482 1.24777 0.94967 0.95548 0.97198 1.69880 1.39972 1.19651 1.23542 0.86925 0.80180 0.83157 0.79938 1.19715 1.20973 1.19058 1.19446 0.89503 0.88863 0.87068 1.23491 1.01177 1.02487 0.87591 1.68407 1.07722 1.06740 1.27654 1.19309 0.90701 1.08704 0.94249 1.20485 0.92613 0.94765 0.96601 1.20709 0.94714 1.06672 0.97196 1.17279 0.77204 1.00559 0.94127 1.91509 1.29971 1.92654 1.97411 1.20588 0.92822 1.04892 0.98021 1.18908 0.93800 0.94291 0.88415 1.68414 1.06266 1.20189 1.26372 0.90448 0.91384 0.91450 0.91407 0.91323 0.84382 0.86526 0.95218 0.93357 0.92403 0.81716 0.84031 0.84227 0.83360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.29 37.16 0.38 -0.72 16 2 C 0.06 0.64 6.19 37.16 0.23 0.87 16 3 O -0.36 -4.50 10.22 -39.25 -0.40 -4.90 16 4 C 0.44 6.50 8.03 36.00 0.29 6.79 16 5 O -0.49 -9.13 16.18 -18.75 -0.30 -9.44 16 6 C 0.13 1.88 5.84 -5.19 -0.03 1.85 16 7 N -0.55 -10.64 2.05 -176.33 -0.36 -11.00 16 8 C 0.22 5.20 4.29 -5.20 -0.02 5.18 16 9 C -0.53 -14.28 9.94 -34.44 -0.34 -14.62 16 10 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 11 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 12 N -0.89 -26.41 13.96 55.43 0.77 -25.63 16 13 Si 0.87 20.98 27.47 -169.99 -4.67 16.31 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 17 C 0.40 7.84 7.38 -155.15 -1.14 6.69 16 18 C 0.04 0.59 10.41 -16.97 -0.18 0.41 16 19 N -0.39 -6.48 10.45 -10.61 -0.11 -6.59 16 20 C -0.01 -0.08 6.59 -84.78 -0.56 -0.64 16 21 C -0.03 -0.33 9.98 -39.49 -0.39 -0.72 16 22 C -0.17 -2.08 9.92 -39.86 -0.40 -2.48 16 23 C 0.13 1.86 7.24 -39.76 -0.29 1.57 16 24 F -0.14 -1.92 17.24 2.25 0.04 -1.88 16 25 C -0.14 -2.38 9.94 -39.43 -0.39 -2.77 16 26 C 0.17 3.26 6.59 -84.81 -0.56 2.70 16 27 N -0.49 -10.40 9.18 -10.04 -0.09 -10.49 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 33 H 0.14 1.85 8.07 -51.93 -0.42 1.44 16 34 H 0.12 1.24 5.96 -51.93 -0.31 0.93 16 35 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 36 H 0.05 1.21 6.72 -51.92 -0.35 0.86 16 37 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.17 2.03 5.99 -52.49 -0.31 1.72 16 39 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 40 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.15 2.48 8.06 -52.49 -0.42 2.05 16 LS Contribution 360.69 15.07 5.44 5.44 Total: -1.00 -33.62 360.69 -7.92 -41.54 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -4.73 Total: 0.46 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -3.50 Total: 6.19 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.21 Total: -53.72 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.70 Total: -14.33 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.62 -7.92 -41.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.824 kcal (2) G-P(sol) polarization free energy of solvation -33.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds