Wall clock time and date at job start Tue Mar 31 2020 19:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45209 * 109.47142 * 2 1 4 4 C 1.34226 * 117.00099 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99959 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00022 * 179.97438 * 4 3 2 7 7 N 1.46502 * 109.47394 * 179.97438 * 6 4 3 8 8 C 1.46495 * 119.99859 * 270.00050 * 7 6 4 9 9 C 1.50700 * 109.47377 * 269.99647 * 8 7 6 10 10 H 1.07997 * 119.99623 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00044 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99784 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00099 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47388 * 89.99863 * 13 11 9 15 15 H 1.48502 * 109.47073 * 210.00341 * 13 11 9 16 16 H 1.48504 * 109.47164 * 329.99739 * 13 11 9 17 17 C 1.38681 * 119.99826 * 89.99623 * 7 6 4 18 18 C 1.40619 * 119.75496 * 4.98348 * 17 7 6 19 19 N 1.31099 * 120.61132 * 180.02562 * 18 17 7 20 20 C 1.33897 * 119.87632 * 359.97438 * 19 18 17 21 21 C 1.40546 * 120.94543 * 180.02562 * 20 19 18 22 22 C 1.36065 * 119.77837 * 179.97438 * 21 20 19 23 23 C 1.39584 * 120.91245 * 359.97438 * 22 21 20 24 24 F 1.35102 * 119.56055 * 180.02562 * 23 22 21 25 25 C 1.36347 * 120.87412 * 0.05052 * 23 22 21 26 26 C 1.40450 * 119.71798 * 359.94940 * 25 23 22 27 27 N 1.31952 * 119.75243 * 185.00107 * 17 7 6 28 28 H 1.09001 * 109.46947 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46917 * 300.00263 * 1 2 3 30 30 H 1.08992 * 109.47119 * 60.00047 * 1 2 3 31 31 H 1.08993 * 109.47443 * 239.99762 * 2 1 3 32 32 H 1.09001 * 109.47215 * 119.99136 * 2 1 3 33 33 H 1.08999 * 109.47043 * 59.99622 * 6 4 3 34 34 H 1.09003 * 109.47240 * 300.00037 * 6 4 3 35 35 H 1.08994 * 109.47380 * 30.00140 * 8 7 6 36 36 H 1.09008 * 109.46914 * 149.99569 * 8 7 6 37 37 H 0.96996 * 120.00009 * 179.97438 * 12 11 9 38 38 H 1.07994 * 119.69393 * 0.03798 * 18 17 7 39 39 H 1.08000 * 120.11130 * 0.02562 * 21 20 19 40 40 H 1.07999 * 119.54529 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.13754 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 7 5.3837 2.8609 -0.0010 8 6 6.1151 2.8232 1.2677 9 6 6.4403 4.2291 1.7021 10 1 6.1325 5.0669 1.0941 11 6 7.1307 4.4457 2.8758 12 7 7.4140 5.6727 3.2551 13 14 7.6636 2.9965 3.9270 14 1 9.0154 2.5495 3.5051 15 1 7.7008 3.4071 5.3537 16 1 6.6982 1.8809 3.7581 17 6 6.0762 2.8240 -1.2020 18 6 5.3784 2.9661 -2.4146 19 7 6.0161 2.9333 -3.5596 20 6 7.3441 2.7637 -3.5787 21 6 8.0504 2.7256 -4.7933 22 6 9.4000 2.5525 -4.7851 23 6 10.0976 2.4121 -3.5843 24 9 11.4377 2.2421 -3.6079 25 6 9.4445 2.4436 -2.3878 26 6 8.0515 2.6207 -2.3594 27 7 7.3849 2.6555 -1.1984 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.5850 3.4699 0.8888 34 1 3.5844 3.4694 -0.8912 35 1 5.5000 2.3412 2.0275 36 1 7.0394 2.2601 1.1377 37 1 7.8994 5.8252 4.0809 38 1 4.3073 3.1037 -2.4025 39 1 7.5238 2.8342 -5.7299 40 1 9.9390 2.5243 -5.7205 41 1 9.9961 2.3333 -1.4659 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157159604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:32 Heat of formation + Delta-G solvation = -62.783046 kcal Electronic energy + Delta-G solvation = -28107.516711 eV Core-core repulsion = 23902.191674 eV Total energy + Delta-G solvation = -4205.325038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.07370 -42.42472 -41.52534 -39.18567 -37.75575 -37.02832 -35.54194 -34.75850 -32.74600 -31.60707 -31.46449 -30.62957 -28.26831 -26.15251 -24.96921 -24.28436 -23.54601 -22.99723 -22.02979 -19.92387 -19.32085 -19.25256 -18.78371 -18.63520 -17.70931 -17.66918 -17.09430 -16.84975 -16.81026 -16.42036 -16.05058 -15.81005 -15.50106 -15.20598 -14.88631 -14.62813 -14.53372 -14.44155 -13.89211 -13.74761 -13.56314 -13.54274 -13.16467 -12.87668 -12.78161 -12.68662 -12.64139 -12.51582 -12.47594 -12.36033 -12.12417 -11.79212 -11.66753 -11.52176 -10.83639 -10.59342 -10.10977 -9.63989 -8.68397 -8.34457 -6.38017 -0.82181 -0.38220 0.87574 1.09915 1.27746 1.32906 1.35097 1.41340 1.69876 2.02790 2.28123 2.91745 2.98767 3.00563 3.07188 3.19126 3.42889 3.65993 3.68741 3.89015 3.92971 4.01790 4.06751 4.11075 4.28433 4.34760 4.36324 4.58621 4.64731 4.81413 4.85349 4.87563 4.94656 4.95974 5.01184 5.14908 5.15472 5.41887 5.43292 5.57487 5.71671 5.97469 6.27093 6.38785 6.63682 6.68817 6.94733 7.25386 8.81526 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.007604 B = 0.004800 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3681.166620 B = 5831.890527 C = 8676.940200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 O -0.352 6.352 4 C 0.445 3.555 5 O -0.534 6.534 6 C 0.126 3.874 7 N -0.562 5.562 8 C 0.241 3.759 9 C -0.524 4.524 10 H 0.043 0.957 11 C 0.024 3.976 12 N -0.938 5.938 13 Si 0.932 3.068 14 H -0.277 1.277 15 H -0.275 1.275 16 H -0.251 1.251 17 C 0.382 3.618 18 C 0.040 3.960 19 N -0.389 5.389 20 C -0.016 4.016 21 C -0.017 4.017 22 C -0.152 4.152 23 C 0.143 3.857 24 F -0.133 7.133 25 C -0.173 4.173 26 C 0.145 3.855 27 N -0.538 5.538 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.147 0.853 34 H 0.158 0.842 35 H 0.035 0.965 36 H 0.026 0.974 37 H 0.268 0.732 38 H 0.204 0.796 39 H 0.180 0.820 40 H 0.185 0.815 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.695 -9.297 -14.779 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 O -0.268 6.268 4 C 0.287 3.713 5 O -0.423 6.423 6 C 0.001 3.999 7 N -0.271 5.271 8 C 0.119 3.881 9 C -0.563 4.563 10 H 0.061 0.939 11 C -0.175 4.175 12 N -0.578 5.578 13 Si 0.756 3.244 14 H -0.202 1.202 15 H -0.200 1.200 16 H -0.175 1.175 17 C 0.132 3.868 18 C -0.143 4.143 19 N -0.101 5.101 20 C -0.141 4.141 21 C -0.036 4.036 22 C -0.173 4.173 23 C 0.122 3.878 24 F -0.112 7.112 25 C -0.195 4.195 26 C 0.019 3.981 27 N -0.263 5.263 28 H 0.116 0.884 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.164 0.836 34 H 0.175 0.825 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.220 0.780 39 H 0.197 0.803 40 H 0.202 0.798 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.313 -9.537 -14.581 19.756 hybrid contribution 1.064 -0.529 1.478 1.897 sum -8.249 -10.066 -13.103 18.467 Atomic orbital electron populations 1.21815 0.89918 1.04326 1.04012 1.23296 0.97336 0.79322 1.02218 1.86509 1.23043 1.33617 1.83587 1.24868 0.81076 0.93601 0.71735 1.90690 1.61393 1.44076 1.46135 1.21352 0.78249 0.90230 1.10058 1.46263 1.04369 1.73096 1.03408 1.19337 0.92472 0.95711 0.80612 1.21432 1.36291 0.92060 1.06518 0.93905 1.25568 0.95245 0.97924 0.98735 1.70008 1.41582 1.21794 1.24439 0.85955 0.79618 0.80366 0.78459 1.20246 1.20000 1.17453 1.19825 0.89445 0.89464 0.88089 1.23922 1.02615 1.01551 0.86210 1.68508 1.07580 1.06707 1.27295 1.19763 0.91044 1.08429 0.94837 1.20905 0.92891 0.93313 0.96487 1.21137 0.94456 1.04028 0.97682 1.17439 0.77252 0.98917 0.94225 1.91521 1.29840 1.92427 1.97401 1.20583 0.92637 1.07487 0.98768 1.19191 0.94473 0.95729 0.88754 1.68272 1.07832 1.21667 1.28560 0.88386 0.91220 0.90686 0.91427 0.92107 0.83585 0.82510 0.94688 0.95574 0.92288 0.77961 0.80320 0.79794 0.84973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 10.29 71.98 0.74 -1.01 16 2 C 0.05 1.01 6.19 71.98 0.45 1.46 16 3 O -0.35 -8.23 10.22 -51.38 -0.53 -8.76 16 4 C 0.45 12.90 8.03 71.24 0.57 13.47 16 5 O -0.53 -19.80 16.18 21.95 0.36 -19.44 16 6 C 0.13 3.50 5.84 85.63 0.50 4.00 16 7 N -0.56 -22.09 2.05 -711.77 -1.46 -23.55 16 8 C 0.24 11.48 4.29 85.63 0.37 11.85 16 9 C -0.52 -29.12 9.94 25.60 0.25 -28.86 16 10 H 0.04 2.62 8.06 -2.91 -0.02 2.59 16 11 C 0.02 1.39 5.47 84.65 0.46 1.85 16 12 N -0.94 -57.39 13.96 21.45 0.30 -57.09 16 13 Si 0.93 44.34 27.47 68.60 1.88 46.23 16 14 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 15 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 16 H -0.25 -11.21 6.54 99.48 0.65 -10.55 16 17 C 0.38 15.15 7.38 133.67 0.99 16.14 16 18 C 0.04 1.26 10.41 85.38 0.89 2.15 16 19 N -0.39 -12.14 10.45 -187.48 -1.96 -14.10 16 20 C -0.02 -0.53 6.59 40.24 0.27 -0.26 16 21 C -0.02 -0.39 9.98 22.33 0.22 -0.16 16 22 C -0.15 -3.13 9.92 22.09 0.22 -2.91 16 23 C 0.14 3.90 7.24 22.15 0.16 4.06 16 24 F -0.13 -3.54 17.24 44.97 0.78 -2.76 16 25 C -0.17 -6.00 9.94 22.37 0.22 -5.78 16 26 C 0.14 5.57 6.59 40.21 0.26 5.83 16 27 N -0.54 -23.95 9.18 -185.68 -1.70 -25.65 16 28 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 1.33 8.13 -2.39 -0.02 1.31 16 32 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 33 H 0.15 3.81 8.07 -2.39 -0.02 3.79 16 34 H 0.16 2.98 5.96 -2.39 -0.01 2.96 16 35 H 0.04 1.63 7.13 -2.39 -0.02 1.61 16 36 H 0.03 1.36 6.72 -2.38 -0.02 1.35 16 37 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.20 4.45 5.99 -2.91 -0.02 4.44 16 39 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 40 H 0.18 2.22 8.06 -2.91 -0.02 2.19 16 41 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -77.54 360.69 5.26 -72.28 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 1.02 Total: 11.02 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: 6.57 Total: 21.82 kcal Atomic # 7 Polarization: -115.56 SS G_CDS: -4.82 Total: -120.39 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.17 Total: -28.20 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.23 kcal Total: -77.54 5.26 -72.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.499 kcal (2) G-P(sol) polarization free energy of solvation -77.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds