Wall clock time and date at job start Tue Mar 31 2020 19:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45195 * 109.47150 * 2 1 4 4 C 1.34227 * 117.00032 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00300 * 0.02562 * 4 3 2 6 6 C 1.50710 * 120.00070 * 179.97438 * 4 3 2 7 7 N 1.46904 * 109.46841 * 185.52591 * 6 4 3 8 8 C 1.46894 * 110.99984 * 293.73941 * 7 6 4 9 9 C 1.50709 * 109.47039 * 288.04793 * 8 7 6 10 10 H 1.07997 * 119.99832 * 3.35027 * 9 8 7 11 11 C 1.37874 * 119.99732 * 183.34628 * 9 8 7 12 12 N 1.31517 * 120.00213 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99869 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47200 * 59.99934 * 13 11 9 15 15 H 1.48497 * 109.47380 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47067 * 300.00028 * 13 11 9 17 17 C 1.37852 * 110.99766 * 57.69664 * 7 6 4 18 18 N 1.32690 * 120.90293 * 254.93443 * 17 7 6 19 19 C 1.32321 * 121.48550 * 180.23871 * 18 17 7 20 20 N 1.31209 * 122.96444 * 359.47759 * 19 18 17 21 21 C 1.34142 * 120.45089 * 0.25733 * 20 19 18 22 22 C 1.40100 * 121.98485 * 180.02562 * 21 20 19 23 23 C 1.36369 * 119.64451 * 179.97438 * 22 21 20 24 24 C 1.39111 * 121.07190 * 0.02775 * 23 22 21 25 25 C 1.36679 * 120.86252 * 359.97438 * 24 23 22 26 26 F 1.35098 * 120.27467 * 179.97438 * 25 24 23 27 27 C 1.40157 * 119.44005 * 359.95823 * 25 24 23 28 28 H 1.08999 * 109.46843 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46515 * 299.99740 * 1 2 3 30 30 H 1.08999 * 109.46940 * 60.00031 * 1 2 3 31 31 H 1.09002 * 109.46698 * 239.99793 * 2 1 3 32 32 H 1.08999 * 109.46940 * 119.99969 * 2 1 3 33 33 H 1.08991 * 109.46784 * 65.52710 * 6 4 3 34 34 H 1.09002 * 109.46928 * 305.52528 * 6 4 3 35 35 H 1.08995 * 109.47380 * 48.04993 * 8 7 6 36 36 H 1.09001 * 109.47132 * 168.04786 * 8 7 6 37 37 H 0.96995 * 119.99892 * 179.97438 * 12 11 9 38 38 H 1.08003 * 118.51827 * 179.75571 * 19 18 17 39 39 H 1.08002 * 120.18184 * 0.02562 * 22 21 20 40 40 H 1.07998 * 119.46493 * 179.97438 * 23 22 21 41 41 H 1.07998 * 119.56899 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9374 -0.0012 7 7 5.3818 2.8629 -0.1350 8 6 5.9878 2.2393 1.0489 9 6 5.9110 3.1927 2.2136 10 1 5.4095 4.1426 2.1017 11 6 6.4808 2.8521 3.4220 12 7 7.0919 1.6954 3.5581 13 14 6.3850 4.0333 4.8658 14 1 4.9615 4.2915 5.2005 15 1 7.0697 3.4361 6.0404 16 1 7.0481 5.3120 4.5041 17 6 5.7389 2.1911 -1.2846 18 7 6.2037 0.9494 -1.2319 19 6 6.5542 0.2955 -2.3275 20 7 6.4603 0.8140 -3.5292 21 6 5.9978 2.0620 -3.6969 22 6 5.8838 2.6470 -4.9648 23 6 5.4068 3.9193 -5.0801 24 6 5.0307 4.6496 -3.9575 25 6 5.1286 4.1106 -2.7053 26 9 4.7605 4.8308 -1.6231 27 6 5.6138 2.8045 -2.5535 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.6666 3.4361 0.9341 34 1 3.5076 3.5012 -0.8376 35 1 5.4495 1.3235 1.2929 36 1 7.0314 2.0030 0.8411 37 1 7.4931 1.4560 4.4081 38 1 6.9304 -0.7120 -2.2286 39 1 6.1712 2.0930 -5.8462 40 1 5.3205 4.3676 -6.0589 41 1 4.6565 5.6557 -4.0769 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157159720.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:10 Heat of formation + Delta-G solvation = -45.879854 kcal Electronic energy + Delta-G solvation = -29675.752118 eV Core-core repulsion = 25471.160058 eV Total energy + Delta-G solvation = -4204.592060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.00908 -42.64869 -41.55505 -39.28952 -38.27100 -37.23114 -34.99212 -33.96496 -32.76015 -32.39540 -30.96054 -30.01824 -28.38508 -25.67526 -25.53864 -24.41258 -23.72535 -22.82194 -21.84207 -19.94037 -19.28034 -18.96985 -18.79558 -18.20620 -17.77911 -17.48225 -17.02004 -16.95851 -16.66258 -16.61773 -15.88638 -15.75346 -15.55001 -15.18541 -15.15867 -14.57066 -14.28114 -14.07088 -13.67682 -13.50693 -13.43956 -13.17318 -13.00237 -12.90994 -12.78018 -12.71350 -12.61455 -12.51665 -12.24423 -12.15536 -11.71315 -11.70540 -11.59285 -11.46735 -10.66024 -10.42185 -10.27520 -9.89522 -9.06685 -8.21697 -6.35387 -0.91669 -0.35971 0.62585 1.07319 1.40622 1.45045 1.52561 1.58583 1.91683 2.28291 2.49732 2.91267 3.04517 3.10514 3.11520 3.24079 3.46890 3.68716 3.76017 3.77737 3.90035 4.02775 4.07251 4.18135 4.24409 4.30492 4.38955 4.73745 4.76554 4.85947 4.87901 4.94496 5.02704 5.05379 5.14221 5.23821 5.29224 5.37732 5.52176 5.66107 5.75289 5.88767 6.06908 6.26860 6.65551 6.78015 7.13331 7.33602 8.89145 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009350 B = 0.005276 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.894709 B = 5305.403486 C = 6540.146338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.416 3.584 5 O -0.502 6.502 6 C 0.077 3.923 7 N -0.452 5.452 8 C 0.217 3.783 9 C -0.538 4.538 10 H 0.076 0.924 11 C 0.004 3.996 12 N -0.931 5.931 13 Si 0.975 3.025 14 H -0.260 1.260 15 H -0.286 1.286 16 H -0.266 1.266 17 C 0.384 3.616 18 N -0.558 5.558 19 C 0.311 3.689 20 N -0.535 5.535 21 C 0.168 3.832 22 C -0.123 4.123 23 C -0.032 4.032 24 C -0.149 4.149 25 C 0.129 3.871 26 F -0.121 7.121 27 C -0.217 4.217 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.009 0.991 36 H -0.003 1.003 37 H 0.264 0.736 38 H 0.210 0.790 39 H 0.166 0.834 40 H 0.194 0.806 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.537 4.511 -17.684 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.257 3.743 5 O -0.389 6.389 6 C -0.050 4.050 7 N -0.169 5.169 8 C 0.093 3.907 9 C -0.576 4.576 10 H 0.094 0.906 11 C -0.195 4.195 12 N -0.571 5.571 13 Si 0.798 3.202 14 H -0.185 1.185 15 H -0.212 1.212 16 H -0.191 1.191 17 C 0.133 3.867 18 N -0.277 5.277 19 C 0.021 3.979 20 N -0.252 5.252 21 C 0.040 3.960 22 C -0.142 4.142 23 C -0.053 4.053 24 C -0.168 4.168 25 C 0.107 3.893 26 F -0.099 7.099 27 C -0.224 4.224 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.027 0.973 36 H 0.015 0.985 37 H 0.073 0.927 38 H 0.226 0.774 39 H 0.184 0.816 40 H 0.212 0.788 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -10.728 3.615 -17.525 20.864 hybrid contribution 0.204 -0.266 1.753 1.785 sum -10.524 3.349 -15.772 19.254 Atomic orbital electron populations 1.21798 0.89277 1.04510 1.03998 1.23236 0.97751 0.79511 1.01547 1.86494 1.23604 1.33553 1.83985 1.25441 0.81463 0.94511 0.72929 1.90812 1.60128 1.43590 1.44334 1.22223 0.84070 0.90086 1.08621 1.59558 1.07657 1.46959 1.02773 1.19479 0.93091 0.93676 0.84479 1.21486 1.36981 1.03786 0.95318 0.90640 1.25970 0.94432 0.97087 1.01975 1.70157 1.37241 1.23377 1.26290 0.85361 0.79036 0.78503 0.77279 1.18480 1.21177 1.19075 1.20711 0.88564 0.86683 0.90711 1.68752 1.16583 1.07676 1.34734 1.25193 0.89973 1.00349 0.82381 1.68902 1.18678 1.11851 1.25739 1.19306 0.93239 0.89715 0.93738 1.21081 1.02038 0.96712 0.94380 1.21360 0.91675 0.91943 1.00290 1.21432 1.02681 1.03418 0.89221 1.17470 0.98658 0.88034 0.85151 1.91531 1.88115 1.76373 1.53899 1.19501 1.10588 0.97714 0.94618 0.88030 0.91094 0.90660 0.92250 0.92693 0.84088 0.84293 0.97337 0.98497 0.92718 0.77399 0.81628 0.78847 0.80312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 10.29 71.98 0.74 -1.86 16 2 C 0.05 1.53 6.19 71.98 0.45 1.98 16 3 O -0.36 -12.36 10.22 -51.39 -0.53 -12.89 16 4 C 0.42 17.13 7.25 71.24 0.52 17.64 16 5 O -0.50 -24.29 11.30 21.97 0.25 -24.04 16 6 C 0.08 3.03 5.01 85.56 0.43 3.46 16 7 N -0.45 -20.98 3.57 -708.95 -2.53 -23.51 16 8 C 0.22 12.37 3.75 85.56 0.32 12.69 16 9 C -0.54 -30.78 8.56 25.60 0.22 -30.56 16 10 H 0.08 4.04 7.43 -2.91 -0.02 4.02 16 11 C 0.00 0.24 5.46 84.65 0.46 0.70 16 12 N -0.93 -58.33 13.29 21.45 0.28 -58.05 16 13 Si 0.97 44.45 29.54 68.60 2.03 46.48 16 14 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 15 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 17 C 0.38 16.96 4.79 133.95 0.64 17.61 16 18 N -0.56 -26.00 7.14 -196.83 -1.41 -27.41 16 19 C 0.31 12.05 12.22 180.90 2.21 14.26 16 20 N -0.54 -18.73 10.45 -193.95 -2.03 -20.76 16 21 C 0.17 5.38 6.61 40.08 0.27 5.65 16 22 C -0.12 -2.57 10.00 22.29 0.22 -2.35 16 23 C -0.03 -0.45 9.94 22.04 0.22 -0.23 16 24 C -0.15 -2.69 9.94 22.11 0.22 -2.47 16 25 C 0.13 3.73 6.75 22.37 0.15 3.88 16 26 F -0.12 -3.80 13.23 44.97 0.59 -3.21 16 27 C -0.22 -7.78 5.68 -21.17 -0.12 -7.90 16 28 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.73 8.13 -2.39 -0.02 1.71 16 32 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 33 H 0.14 5.44 7.09 -2.39 -0.02 5.42 16 34 H 0.14 4.52 5.65 -2.39 -0.01 4.51 16 35 H 0.01 0.55 5.62 -2.39 -0.01 0.54 16 36 H 0.00 -0.21 7.69 -2.39 -0.02 -0.23 16 37 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 38 H 0.21 6.75 8.06 -2.91 -0.02 6.73 16 39 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 40 H 0.19 0.75 8.06 -2.91 -0.02 0.72 16 41 H 0.18 1.92 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -80.82 347.21 4.69 -76.13 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 1.08 Total: 14.75 kcal Atomic # 6 Polarization: 25.55 SS G_CDS: 6.94 Total: 32.49 kcal Atomic # 7 Polarization: -124.04 SS G_CDS: -5.68 Total: -129.71 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -0.28 Total: -36.93 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.59 Total: -3.21 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -80.82 4.69 -76.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159720.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.255 kcal (2) G-P(sol) polarization free energy of solvation -80.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds