Wall clock time and date at job start Tue Mar 31 2020 19:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45199 * 109.46814 * 2 1 4 4 C 1.34230 * 116.99893 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99766 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00162 * 180.02562 * 4 3 2 7 7 N 1.46906 * 109.47127 * 184.78681 * 6 4 3 8 8 C 1.46900 * 110.99641 * 290.65024 * 7 6 4 9 9 C 1.50704 * 109.46855 * 288.16398 * 8 7 6 10 10 H 1.08000 * 120.00574 * 3.64769 * 9 8 7 11 11 C 1.37883 * 119.99807 * 183.65305 * 9 8 7 12 12 N 1.31513 * 119.99907 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99951 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46879 * 90.00620 * 13 11 9 15 15 H 1.48500 * 109.47265 * 210.00079 * 13 11 9 16 16 H 1.48498 * 109.47359 * 330.00321 * 13 11 9 17 17 C 1.38549 * 111.00023 * 54.60052 * 7 6 4 18 18 N 1.32138 * 120.62486 * 253.75063 * 17 7 6 19 19 N 1.28080 * 123.23157 * 180.02562 * 18 17 7 20 20 C 1.31310 * 123.52527 * 0.02562 * 19 18 17 21 21 C 1.40697 * 119.10686 * 359.97438 * 20 19 18 22 22 C 1.40105 * 122.71357 * 180.02562 * 21 20 19 23 23 C 1.36278 * 119.41594 * 179.97438 * 22 21 20 24 24 C 1.39508 * 121.03301 * 359.97438 * 23 22 21 25 25 F 1.35102 * 119.50186 * 180.02562 * 24 23 22 26 26 C 1.36604 * 121.00243 * 0.02562 * 24 23 22 27 27 C 1.39828 * 119.38979 * 359.97438 * 26 24 23 28 28 H 1.09001 * 109.46503 * 300.00027 * 1 2 3 29 29 H 1.08994 * 109.46870 * 59.99678 * 1 2 3 30 30 H 1.09000 * 109.46916 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46982 * 240.00198 * 2 1 3 32 32 H 1.08995 * 109.47350 * 120.00099 * 2 1 3 33 33 H 1.08995 * 109.47584 * 64.78210 * 6 4 3 34 34 H 1.09005 * 109.47101 * 304.77614 * 6 4 3 35 35 H 1.08996 * 109.47524 * 48.16320 * 8 7 6 36 36 H 1.09001 * 109.47023 * 168.16997 * 8 7 6 37 37 H 0.97004 * 120.00061 * 179.97438 * 12 11 9 38 38 H 1.08006 * 120.44620 * 179.97438 * 20 19 18 39 39 H 1.07996 * 120.29013 * 359.97438 * 22 21 20 40 40 H 1.07994 * 119.47982 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.30238 * 179.71559 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3832 2.8625 -0.1163 8 6 5.9810 2.3111 1.1071 9 6 5.8867 3.3286 2.2148 10 1 5.3765 4.2653 2.0457 11 6 6.4518 3.0636 3.4442 12 7 6.3691 3.9512 4.4111 13 14 7.3338 1.4431 3.7370 14 1 8.7693 1.5906 3.3865 15 1 7.2100 1.0634 5.1673 16 1 6.7234 0.3872 2.8899 17 6 5.7557 2.1235 -1.2275 18 7 6.2447 0.9034 -1.0915 19 7 6.6049 0.1771 -2.0830 20 6 6.5267 0.5675 -3.3343 21 6 6.0223 1.8493 -3.6211 22 6 5.9054 2.3422 -4.9273 23 6 5.4068 3.5945 -5.1280 24 6 5.0112 4.3919 -4.0538 25 9 4.5207 5.6286 -4.2883 26 6 5.1123 3.9411 -2.7682 27 6 5.6198 2.6605 -2.5280 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 3.6555 3.4400 0.9301 34 1 3.5175 3.4977 -0.8436 35 1 5.4458 1.4071 1.3976 36 1 7.0281 2.0703 0.9232 37 1 6.7664 3.7646 5.2761 38 1 6.8454 -0.0864 -4.1326 39 1 6.2076 1.7350 -5.7677 40 1 5.3158 3.9753 -6.1345 41 1 4.8070 4.5696 -1.9448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157159737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:07 Heat of formation + Delta-G solvation = -23.800281 kcal Electronic energy + Delta-G solvation = -29249.423890 eV Core-core repulsion = 25045.789272 eV Total energy + Delta-G solvation = -4203.634618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.09843 -41.51814 -40.21954 -37.99449 -37.44047 -35.82353 -32.96614 -32.13962 -31.73227 -31.52600 -30.18247 -28.67826 -26.77671 -24.44715 -24.28794 -23.17630 -22.43102 -21.50429 -20.53444 -18.58583 -18.38909 -17.67265 -17.30027 -16.75412 -16.54187 -16.07124 -15.86906 -15.85402 -15.43540 -15.14281 -14.97837 -14.24294 -14.16562 -13.97095 -13.76019 -13.48348 -13.21851 -12.99301 -12.84497 -12.43791 -12.29853 -12.21228 -11.75560 -11.68805 -11.54310 -11.42600 -10.98767 -10.84965 -10.55502 -10.48158 -10.40362 -10.29997 -9.96545 -9.50193 -9.40054 -9.27981 -8.72480 -8.56825 -7.78697 -6.12225 -4.12160 0.18074 0.52530 1.66476 2.48748 2.76364 2.88133 3.32795 3.39908 3.52972 3.69858 3.90331 3.99803 4.26145 4.39272 4.42858 4.52445 4.60447 4.78147 4.87036 4.90982 4.97484 5.02677 5.22879 5.26032 5.30840 5.37764 5.47130 5.60298 5.63432 5.66560 5.72704 5.74669 5.83176 5.89853 6.04167 6.14549 6.48896 6.60630 6.62530 6.95845 7.31879 7.37242 7.68568 8.03189 8.45663 8.89332 9.19245 9.48707 10.99430 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009037 B = 0.005079 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.775951 B = 5511.314402 C = 6571.512838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.362 6.362 4 C 0.420 3.580 5 O -0.476 6.476 6 C 0.072 3.928 7 N -0.438 5.438 8 C 0.159 3.841 9 C -0.526 4.526 10 H 0.083 0.917 11 C 0.078 3.922 12 N -0.894 5.894 13 Si 0.865 3.135 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.257 1.257 17 C 0.293 3.707 18 N -0.251 5.251 19 N -0.240 5.240 20 C 0.046 3.954 21 C -0.081 4.081 22 C -0.067 4.067 23 C -0.134 4.134 24 C 0.106 3.894 25 F -0.135 7.135 26 C -0.111 4.111 27 C -0.056 4.056 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.149 0.851 34 H 0.109 0.891 35 H 0.033 0.967 36 H 0.038 0.962 37 H 0.266 0.734 38 H 0.171 0.829 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.196 -3.311 -19.248 21.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.279 6.279 4 C 0.260 3.740 5 O -0.361 6.361 6 C -0.056 4.056 7 N -0.156 5.156 8 C 0.035 3.965 9 C -0.564 4.564 10 H 0.101 0.899 11 C -0.125 4.125 12 N -0.532 5.532 13 Si 0.692 3.308 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.182 1.182 17 C 0.046 3.954 18 N -0.089 5.089 19 N -0.072 5.072 20 C -0.131 4.131 21 C -0.088 4.088 22 C -0.087 4.087 23 C -0.154 4.154 24 C 0.085 3.915 25 F -0.113 7.113 26 C -0.131 4.131 27 C -0.065 4.065 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.166 0.834 34 H 0.127 0.873 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.189 0.811 39 H 0.164 0.836 40 H 0.160 0.840 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.336 -4.357 -17.919 19.846 hybrid contribution -0.040 -0.257 -0.638 0.689 sum -7.376 -4.614 -18.556 20.495 Atomic orbital electron populations 1.21785 0.92848 1.02650 1.03414 1.22933 0.95084 0.80888 1.02368 1.86511 1.25085 1.31906 1.84421 1.25259 0.80863 0.94501 0.73383 1.90836 1.59345 1.42557 1.43314 1.22160 0.85440 0.90339 1.07672 1.59686 1.05914 1.45745 1.04294 1.20479 0.95632 0.96042 0.84360 1.20965 1.37690 1.03600 0.94153 0.89867 1.24755 0.95439 0.96526 0.95750 1.69874 1.45047 1.34676 1.03628 0.86973 0.80942 0.85188 0.77728 1.19978 1.21108 1.18152 1.21806 0.93949 0.88985 0.90659 1.73163 1.11114 1.01381 1.23194 1.72373 1.10067 1.27586 0.97134 1.24457 0.97945 0.93727 0.96972 1.18906 1.00173 0.95834 0.93936 1.20775 0.97387 0.95031 0.95472 1.20990 1.00638 0.94784 0.98991 1.17455 0.99226 0.81143 0.93697 1.91535 1.85191 1.39267 1.95315 1.21029 0.99866 0.95748 0.96472 1.18320 1.00405 0.94798 0.93005 0.91349 0.91711 0.90551 0.91868 0.91245 0.83370 0.87346 0.94886 0.94395 0.92462 0.81145 0.83576 0.84045 0.82401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 37.16 0.38 -1.06 16 2 C 0.06 0.83 6.19 37.16 0.23 1.06 16 3 O -0.36 -5.78 10.22 -39.26 -0.40 -6.18 16 4 C 0.42 7.75 7.23 36.00 0.26 8.01 16 5 O -0.48 -10.28 11.36 -18.75 -0.21 -10.49 16 6 C 0.07 1.25 5.49 -4.98 -0.03 1.22 16 7 N -0.44 -8.98 4.16 -175.41 -0.73 -9.71 16 8 C 0.16 3.95 2.82 -4.97 -0.01 3.93 16 9 C -0.53 -14.43 9.07 -34.44 -0.31 -14.74 16 10 H 0.08 2.37 7.68 -52.49 -0.40 1.96 16 11 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 12 N -0.89 -26.80 13.96 55.43 0.77 -26.02 16 13 Si 0.87 22.17 27.40 -169.99 -4.66 17.51 16 14 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.26 -6.70 6.65 56.52 0.38 -6.32 16 17 C 0.29 5.73 4.73 -154.83 -0.73 5.00 16 18 N -0.25 -5.41 8.05 31.46 0.25 -5.15 16 19 N -0.24 -4.52 11.39 30.88 0.35 -4.17 16 20 C 0.05 0.64 11.20 -16.85 -0.19 0.45 16 21 C -0.08 -1.07 5.75 -106.85 -0.61 -1.69 16 22 C -0.07 -0.62 9.83 -39.59 -0.39 -1.01 16 23 C -0.13 -1.23 9.92 -39.81 -0.40 -1.63 16 24 C 0.11 1.22 7.24 -39.70 -0.29 0.94 16 25 F -0.13 -1.58 17.24 2.25 0.04 -1.54 16 26 C -0.11 -1.50 8.65 -39.58 -0.34 -1.85 16 27 C -0.06 -0.88 5.68 -106.70 -0.61 -1.49 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 32 H 0.07 0.99 8.13 -51.93 -0.42 0.56 16 33 H 0.15 2.61 7.03 -51.93 -0.37 2.25 16 34 H 0.11 1.48 6.28 -51.93 -0.33 1.16 16 35 H 0.03 0.88 5.26 -51.93 -0.27 0.61 16 36 H 0.04 1.00 6.90 -51.93 -0.36 0.65 16 37 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.17 1.58 8.06 -52.48 -0.42 1.16 16 39 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.16 2.10 6.62 -52.49 -0.35 1.75 16 LS Contribution 347.15 15.07 5.23 5.23 Total: -1.00 -34.68 347.15 -7.10 -41.78 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -4.62 Total: -0.55 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -3.13 Total: -0.70 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.65 Total: -45.05 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.61 Total: -16.67 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.66 Total: 17.51 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.68 -7.10 -41.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.977 kcal (2) G-P(sol) polarization free energy of solvation -34.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds