Wall clock time and date at job start Tue Mar 31 2020 19:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45199 * 109.46814 * 2 1 4 4 C 1.34230 * 116.99893 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99766 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00162 * 180.02562 * 4 3 2 7 7 N 1.46906 * 109.47127 * 184.78681 * 6 4 3 8 8 C 1.46900 * 110.99641 * 290.65024 * 7 6 4 9 9 C 1.50704 * 109.46855 * 288.16398 * 8 7 6 10 10 H 1.08000 * 120.00574 * 3.64769 * 9 8 7 11 11 C 1.37883 * 119.99807 * 183.65305 * 9 8 7 12 12 N 1.31513 * 119.99907 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99951 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46879 * 90.00620 * 13 11 9 15 15 H 1.48500 * 109.47265 * 210.00079 * 13 11 9 16 16 H 1.48498 * 109.47359 * 330.00321 * 13 11 9 17 17 C 1.38549 * 111.00023 * 54.60052 * 7 6 4 18 18 N 1.32138 * 120.62486 * 253.75063 * 17 7 6 19 19 N 1.28080 * 123.23157 * 180.02562 * 18 17 7 20 20 C 1.31310 * 123.52527 * 0.02562 * 19 18 17 21 21 C 1.40697 * 119.10686 * 359.97438 * 20 19 18 22 22 C 1.40105 * 122.71357 * 180.02562 * 21 20 19 23 23 C 1.36278 * 119.41594 * 179.97438 * 22 21 20 24 24 C 1.39508 * 121.03301 * 359.97438 * 23 22 21 25 25 F 1.35102 * 119.50186 * 180.02562 * 24 23 22 26 26 C 1.36604 * 121.00243 * 0.02562 * 24 23 22 27 27 C 1.39828 * 119.38979 * 359.97438 * 26 24 23 28 28 H 1.09001 * 109.46503 * 300.00027 * 1 2 3 29 29 H 1.08994 * 109.46870 * 59.99678 * 1 2 3 30 30 H 1.09000 * 109.46916 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46982 * 240.00198 * 2 1 3 32 32 H 1.08995 * 109.47350 * 120.00099 * 2 1 3 33 33 H 1.08995 * 109.47584 * 64.78210 * 6 4 3 34 34 H 1.09005 * 109.47101 * 304.77614 * 6 4 3 35 35 H 1.08996 * 109.47524 * 48.16320 * 8 7 6 36 36 H 1.09001 * 109.47023 * 168.16997 * 8 7 6 37 37 H 0.97004 * 120.00061 * 179.97438 * 12 11 9 38 38 H 1.08006 * 120.44620 * 179.97438 * 20 19 18 39 39 H 1.07996 * 120.29013 * 359.97438 * 22 21 20 40 40 H 1.07994 * 119.47982 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.30238 * 179.71559 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3832 2.8625 -0.1163 8 6 5.9810 2.3111 1.1071 9 6 5.8867 3.3286 2.2148 10 1 5.3765 4.2653 2.0457 11 6 6.4518 3.0636 3.4442 12 7 6.3691 3.9512 4.4111 13 14 7.3338 1.4431 3.7370 14 1 8.7693 1.5906 3.3865 15 1 7.2100 1.0634 5.1673 16 1 6.7234 0.3872 2.8899 17 6 5.7557 2.1235 -1.2275 18 7 6.2447 0.9034 -1.0915 19 7 6.6049 0.1771 -2.0830 20 6 6.5267 0.5675 -3.3343 21 6 6.0223 1.8493 -3.6211 22 6 5.9054 2.3422 -4.9273 23 6 5.4068 3.5945 -5.1280 24 6 5.0112 4.3919 -4.0538 25 9 4.5207 5.6286 -4.2883 26 6 5.1123 3.9411 -2.7682 27 6 5.6198 2.6605 -2.5280 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 3.6555 3.4400 0.9301 34 1 3.5175 3.4977 -0.8436 35 1 5.4458 1.4071 1.3976 36 1 7.0281 2.0703 0.9232 37 1 6.7664 3.7646 5.2761 38 1 6.8454 -0.0864 -4.1326 39 1 6.2076 1.7350 -5.7677 40 1 5.3158 3.9753 -6.1345 41 1 4.8070 4.5696 -1.9448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157159737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:06 Heat of formation + Delta-G solvation = -46.922981 kcal Electronic energy + Delta-G solvation = -29250.426566 eV Core-core repulsion = 25045.789272 eV Total energy + Delta-G solvation = -4204.637294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.03639 -42.75905 -41.55844 -39.20024 -38.66988 -37.27561 -34.93368 -33.47616 -32.80074 -32.56365 -31.32517 -30.45998 -28.28603 -25.64225 -25.41743 -24.29814 -23.80392 -22.91315 -21.93904 -19.71132 -19.64162 -19.15359 -18.74739 -18.24101 -17.83146 -17.38905 -17.16576 -16.93994 -16.65722 -16.34863 -16.09494 -16.05354 -15.39763 -15.29534 -14.97435 -14.69158 -14.42343 -14.29779 -13.99423 -13.74773 -13.66416 -13.28708 -13.21709 -12.89677 -12.87218 -12.70017 -12.61098 -12.53858 -12.22672 -11.90705 -11.82091 -11.73276 -11.63845 -11.47327 -10.85842 -10.65523 -10.26520 -9.95884 -9.16291 -8.36865 -6.38651 -0.82581 -0.49796 0.61821 1.04676 1.25209 1.28068 1.44325 1.57542 1.79551 2.27280 2.35562 2.80109 2.97687 3.00361 3.23922 3.36113 3.52406 3.63243 3.66831 3.78192 3.89407 3.97117 4.02685 4.14348 4.24201 4.31110 4.36611 4.42233 4.68752 4.74803 4.78455 4.85207 4.85902 4.88965 4.97710 5.04483 5.08933 5.23329 5.35620 5.37446 5.57940 5.63180 5.87539 6.32993 6.62660 6.65314 7.24510 7.95698 8.77845 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009037 B = 0.005079 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.775951 B = 5511.314402 C = 6571.512838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.421 3.579 5 O -0.509 6.509 6 C 0.072 3.928 7 N -0.443 5.443 8 C 0.183 3.817 9 C -0.520 4.520 10 H 0.065 0.935 11 C 0.032 3.968 12 N -0.930 5.930 13 Si 0.920 3.080 14 H -0.269 1.269 15 H -0.272 1.272 16 H -0.270 1.270 17 C 0.268 3.732 18 N -0.301 5.301 19 N -0.295 5.295 20 C 0.073 3.927 21 C -0.095 4.095 22 C -0.039 4.039 23 C -0.123 4.123 24 C 0.120 3.880 25 F -0.134 7.134 26 C -0.137 4.137 27 C -0.068 4.068 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.012 0.988 36 H 0.015 0.985 37 H 0.269 0.731 38 H 0.222 0.778 39 H 0.199 0.801 40 H 0.185 0.815 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.847 -3.631 -23.575 25.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.263 3.737 5 O -0.396 6.396 6 C -0.056 4.056 7 N -0.162 5.162 8 C 0.057 3.943 9 C -0.559 4.559 10 H 0.083 0.917 11 C -0.168 4.168 12 N -0.570 5.570 13 Si 0.745 3.255 14 H -0.194 1.194 15 H -0.197 1.197 16 H -0.195 1.195 17 C 0.019 3.981 18 N -0.136 5.136 19 N -0.125 5.125 20 C -0.104 4.104 21 C -0.103 4.103 22 C -0.058 4.058 23 C -0.142 4.142 24 C 0.100 3.900 25 F -0.112 7.112 26 C -0.158 4.158 27 C -0.077 4.077 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.157 0.843 34 H 0.163 0.837 35 H 0.030 0.970 36 H 0.033 0.967 37 H 0.079 0.921 38 H 0.238 0.762 39 H 0.217 0.783 40 H 0.202 0.798 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.002 -4.686 -22.251 24.106 hybrid contribution 0.068 -0.097 0.407 0.424 sum -7.934 -4.783 -21.844 23.727 Atomic orbital electron populations 1.21803 0.89435 1.04487 1.03970 1.23241 0.97663 0.79477 1.01653 1.86508 1.23638 1.33558 1.83818 1.25376 0.81425 0.94399 0.72545 1.90830 1.60266 1.43595 1.44931 1.22262 0.84389 0.90292 1.08670 1.59600 1.07305 1.46188 1.03099 1.19905 0.94364 0.94284 0.85728 1.21179 1.36377 1.03320 0.94977 0.91683 1.25404 0.96395 0.99128 0.95837 1.69962 1.46501 1.36299 1.04203 0.86112 0.79954 0.81590 0.77802 1.19443 1.19719 1.19521 1.21810 0.95561 0.89223 0.91469 1.72945 1.12556 1.02624 1.25484 1.72232 1.13312 1.28245 0.98715 1.25271 0.94384 0.94389 0.96397 1.19250 1.00470 0.95460 0.95144 1.21314 0.94730 0.95138 0.94663 1.21459 0.98670 0.94138 0.99976 1.17676 0.97616 0.81100 0.93653 1.91547 1.85033 1.39440 1.95219 1.20935 1.01909 0.95331 0.97597 1.18375 1.01260 0.95942 0.92121 0.91252 0.90632 0.88036 0.92029 0.92657 0.84337 0.83734 0.97031 0.96668 0.92119 0.76155 0.78350 0.79785 0.83322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 10.29 71.99 0.74 -1.76 16 2 C 0.05 1.45 6.19 71.99 0.45 1.90 16 3 O -0.36 -11.69 10.22 -51.42 -0.53 -12.22 16 4 C 0.42 16.29 7.23 71.23 0.52 16.80 16 5 O -0.51 -23.28 11.36 21.95 0.25 -23.03 16 6 C 0.07 2.62 5.49 85.55 0.47 3.09 16 7 N -0.44 -19.21 4.16 -708.88 -2.95 -22.16 16 8 C 0.18 9.65 2.82 85.56 0.24 9.89 16 9 C -0.52 -30.02 9.07 25.60 0.23 -29.79 16 10 H 0.07 3.91 7.68 -2.91 -0.02 3.89 16 11 C 0.03 1.90 5.47 84.66 0.46 2.37 16 12 N -0.93 -57.39 13.96 21.45 0.30 -57.09 16 13 Si 0.92 47.69 27.40 68.60 1.88 49.57 16 14 H -0.27 -13.62 7.11 99.48 0.71 -12.91 16 15 H -0.27 -13.39 7.11 99.48 0.71 -12.68 16 16 H -0.27 -14.50 6.65 99.48 0.66 -13.84 16 17 C 0.27 10.89 4.73 133.85 0.63 11.52 16 18 N -0.30 -13.55 8.05 -54.37 -0.44 -13.99 16 19 N -0.29 -11.25 11.39 -56.22 -0.64 -11.89 16 20 C 0.07 1.85 11.20 85.37 0.96 2.81 16 21 C -0.10 -2.25 5.75 -21.31 -0.12 -2.37 16 22 C -0.04 -0.49 9.83 22.27 0.22 -0.27 16 23 C -0.12 -1.55 9.92 22.12 0.22 -1.33 16 24 C 0.12 2.39 7.24 22.19 0.16 2.55 16 25 F -0.13 -2.74 17.24 44.97 0.78 -1.96 16 26 C -0.14 -3.58 8.65 22.27 0.19 -3.39 16 27 C -0.07 -2.12 5.68 -21.21 -0.12 -2.24 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 32 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16 33 H 0.14 5.25 7.03 -2.39 -0.02 5.23 16 34 H 0.15 4.07 6.28 -2.38 -0.01 4.06 16 35 H 0.01 0.67 5.26 -2.39 -0.01 0.66 16 36 H 0.02 0.86 6.90 -2.39 -0.02 0.84 16 37 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.22 3.01 8.06 -2.91 -0.02 2.99 16 39 H 0.20 0.48 8.06 -2.91 -0.02 0.46 16 40 H 0.18 0.89 8.06 -2.91 -0.02 0.86 16 41 H 0.15 4.03 6.62 -2.91 -0.02 4.01 16 Total: -1.00 -82.56 347.15 4.94 -77.63 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: 1.03 Total: 5.38 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 5.25 Total: 9.77 kcal Atomic # 7 Polarization: -101.41 SS G_CDS: -3.72 Total: -105.14 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -0.28 Total: -35.25 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 1.88 Total: 49.57 kcal Total: -82.56 4.94 -77.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.706 kcal (2) G-P(sol) polarization free energy of solvation -82.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds