Wall clock time and date at job start Tue Mar 31 2020 19:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45199 * 109.47275 * 2 1 4 4 C 1.34225 * 117.00192 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00441 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.00078 * 179.97438 * 4 3 2 7 7 N 1.46897 * 109.47345 * 185.33444 * 6 4 3 8 8 C 1.46895 * 111.00017 * 290.90867 * 7 6 4 9 9 C 1.50705 * 109.47073 * 288.17122 * 8 7 6 10 10 H 1.07999 * 120.00048 * 3.62297 * 9 8 7 11 11 C 1.37878 * 119.99847 * 183.62521 * 9 8 7 12 12 N 1.31515 * 119.99859 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00283 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46786 * 89.99988 * 13 11 9 15 15 H 1.48489 * 109.47127 * 209.99855 * 13 11 9 16 16 H 1.48496 * 109.46940 * 330.00167 * 13 11 9 17 17 C 1.37876 * 110.99793 * 54.85890 * 7 6 4 18 18 N 1.32626 * 120.91564 * 253.86566 * 17 7 6 19 19 C 1.32347 * 121.48808 * 180.23795 * 18 17 7 20 20 N 1.31180 * 122.96730 * 359.47208 * 19 18 17 21 21 C 1.34107 * 120.45814 * 0.25227 * 20 19 18 22 22 C 1.40375 * 121.99185 * 180.02562 * 21 20 19 23 23 F 1.35094 * 120.23364 * 0.02562 * 22 21 20 24 24 C 1.36502 * 119.53666 * 179.97438 * 22 21 20 25 25 C 1.39194 * 121.00243 * 0.02562 * 24 22 21 26 26 C 1.36377 * 120.92868 * 359.97438 * 25 24 22 27 27 C 1.39961 * 119.54787 * 359.95434 * 26 25 24 28 28 H 1.08995 * 109.47750 * 300.00079 * 1 2 3 29 29 H 1.08998 * 109.47073 * 60.00468 * 1 2 3 30 30 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47634 * 240.00117 * 2 1 3 32 32 H 1.09006 * 109.47200 * 119.99898 * 2 1 3 33 33 H 1.09000 * 109.46789 * 65.33431 * 6 4 3 34 34 H 1.08999 * 109.47189 * 305.33734 * 6 4 3 35 35 H 1.09004 * 109.47263 * 48.17163 * 8 7 6 36 36 H 1.09001 * 109.47437 * 168.16853 * 8 7 6 37 37 H 0.97000 * 120.00046 * 180.02562 * 12 11 9 38 38 H 1.07998 * 118.52183 * 179.75452 * 19 18 17 39 39 H 1.08002 * 119.50059 * 180.02562 * 24 22 21 40 40 H 1.08004 * 119.53422 * 179.97438 * 25 24 22 41 41 H 1.08001 * 120.23027 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 7 5.3822 2.8628 -0.1280 8 6 5.9891 2.3028 1.0868 9 6 5.9035 3.3125 2.2024 10 1 5.3926 4.2506 2.0436 11 6 6.4775 3.0384 3.4257 12 7 6.4033 3.9197 4.3991 13 14 7.3606 1.4155 3.7006 14 1 8.7936 1.5646 3.3406 15 1 7.2471 1.0259 5.1290 16 1 6.7433 0.3659 2.8506 17 6 5.7440 2.1350 -1.2417 18 7 6.2338 0.9081 -1.1244 19 6 6.5891 0.2012 -2.1853 20 7 6.4757 0.6500 -3.4127 21 6 5.9870 1.8769 -3.6455 22 6 5.8513 2.3891 -4.9455 23 9 6.2161 1.6440 -6.0117 24 6 5.3471 3.6448 -5.1247 25 6 4.9657 4.4262 -4.0378 26 6 5.0846 3.9585 -2.7622 27 6 5.5965 2.6745 -2.5428 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.6628 3.4376 0.9335 34 1 3.5107 3.4999 -0.8389 35 1 5.4558 1.3968 1.3750 36 1 7.0346 2.0629 0.8933 37 1 6.8074 3.7271 5.2596 38 1 6.9862 -0.7917 -2.0341 39 1 5.2425 4.0381 -6.1251 40 1 4.5700 5.4168 -4.2069 41 1 4.7856 4.5746 -1.9271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157159897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:24 Heat of formation + Delta-G solvation = -30.298464 kcal Electronic energy + Delta-G solvation = -29272.759278 eV Core-core repulsion = 25068.842878 eV Total energy + Delta-G solvation = -4203.916401 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.87122 -41.51939 -40.23332 -37.94265 -37.33046 -35.90520 -33.14719 -32.46187 -31.77041 -31.27021 -29.97341 -28.72917 -27.02341 -24.39696 -24.29548 -23.20127 -22.09440 -21.49588 -20.57014 -18.70697 -18.29634 -17.65039 -17.44799 -16.73808 -16.55599 -15.99389 -15.91068 -15.85490 -15.24666 -15.05968 -14.86286 -14.47218 -14.16770 -13.93773 -13.76754 -13.49266 -13.26889 -12.86248 -12.50611 -12.43981 -12.27492 -12.00616 -11.95984 -11.74966 -11.56748 -11.43443 -11.09462 -10.87336 -10.62701 -10.57624 -10.46612 -10.36177 -10.03257 -9.57695 -9.30438 -8.99318 -8.71485 -8.53386 -7.85094 -6.17579 -4.17809 0.21532 0.69351 1.75608 2.43122 2.80363 2.93747 3.27063 3.34576 3.45145 3.60825 3.91838 4.08506 4.21973 4.36699 4.48668 4.67182 4.79468 4.80187 4.86435 4.88122 4.98436 5.04734 5.17542 5.22273 5.28397 5.32883 5.61330 5.65524 5.68049 5.70720 5.86438 5.88738 5.91211 6.16326 6.20048 6.43454 6.55947 6.66182 6.82579 7.14483 7.25349 7.36561 7.63379 7.96837 8.35909 8.39686 8.84224 9.42859 10.94086 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009769 B = 0.004972 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.492745 B = 5629.685191 C = 6924.033999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.361 6.361 4 C 0.420 3.580 5 O -0.476 6.476 6 C 0.075 3.925 7 N -0.442 5.442 8 C 0.161 3.839 9 C -0.528 4.528 10 H 0.084 0.916 11 C 0.079 3.921 12 N -0.893 5.893 13 Si 0.867 3.133 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.259 1.259 17 C 0.404 3.596 18 N -0.518 5.518 19 C 0.325 3.675 20 N -0.531 5.531 21 C 0.140 3.860 22 C 0.104 3.896 23 F -0.126 7.126 24 C -0.118 4.118 25 C -0.116 4.116 26 C -0.064 4.064 27 C -0.144 4.144 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.150 0.850 34 H 0.112 0.888 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.266 0.734 38 H 0.193 0.807 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.205 -1.913 -15.100 17.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.278 6.278 4 C 0.260 3.740 5 O -0.361 6.361 6 C -0.053 4.053 7 N -0.159 5.159 8 C 0.036 3.964 9 C -0.566 4.566 10 H 0.102 0.898 11 C -0.125 4.125 12 N -0.531 5.531 13 Si 0.693 3.307 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.183 1.183 17 C 0.152 3.848 18 N -0.236 5.236 19 C 0.035 3.965 20 N -0.247 5.247 21 C 0.011 3.989 22 C 0.084 3.916 23 F -0.104 7.104 24 C -0.140 4.140 25 C -0.134 4.134 26 C -0.085 4.085 27 C -0.151 4.151 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.168 0.832 34 H 0.130 0.870 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.209 0.791 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.370 -2.728 -14.930 17.332 hybrid contribution 0.299 -1.118 0.169 1.169 sum -8.071 -3.846 -14.761 17.257 Atomic orbital electron populations 1.21783 0.92801 1.02694 1.03448 1.22937 0.95142 0.80806 1.02339 1.86505 1.24982 1.31971 1.84372 1.25204 0.80917 0.94459 0.73402 1.90818 1.59338 1.42591 1.43347 1.22133 0.84827 0.90453 1.07931 1.59432 1.06259 1.45849 1.04389 1.20484 0.95533 0.95995 0.84350 1.20966 1.37616 1.03761 0.94236 0.89840 1.24757 0.95448 0.96545 0.95718 1.69870 1.44772 1.34815 1.03652 0.86955 0.80879 0.85118 0.77730 1.20019 1.21116 1.18274 1.20520 0.88054 0.86128 0.90081 1.68740 1.15058 1.05020 1.34756 1.24777 0.90097 0.99271 0.82363 1.68770 1.17985 1.12945 1.25021 1.18746 0.96607 0.91271 0.92274 1.16936 1.02492 0.90528 0.81657 1.91504 1.89285 1.76293 1.53315 1.20965 0.99328 0.92435 1.01241 1.20723 1.00928 1.00380 0.91381 1.21127 0.95599 0.93557 0.98171 1.18982 1.05551 0.97180 0.93340 0.91327 0.91668 0.90533 0.91854 0.91251 0.83244 0.86991 0.94704 0.94401 0.92416 0.79081 0.84049 0.84223 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.29 37.15 0.38 -1.00 16 2 C 0.06 0.79 6.19 37.15 0.23 1.02 16 3 O -0.36 -5.48 10.22 -39.25 -0.40 -5.88 16 4 C 0.42 7.35 7.24 36.01 0.26 7.61 16 5 O -0.48 -9.69 11.36 -18.75 -0.21 -9.91 16 6 C 0.07 1.21 5.47 -4.98 -0.03 1.18 16 7 N -0.44 -8.59 4.13 -175.40 -0.72 -9.31 16 8 C 0.16 3.79 2.82 -4.98 -0.01 3.78 16 9 C -0.53 -13.95 9.08 -34.44 -0.31 -14.27 16 10 H 0.08 2.29 7.68 -52.49 -0.40 1.89 16 11 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 12 N -0.89 -26.11 13.96 55.43 0.77 -25.34 16 13 Si 0.87 21.41 27.40 -169.99 -4.66 16.75 16 14 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.26 -6.42 6.65 56.52 0.38 -6.04 16 17 C 0.40 7.62 4.67 -154.96 -0.72 6.90 16 18 N -0.52 -10.29 7.06 -13.54 -0.10 -10.38 16 19 C 0.33 5.67 12.22 -92.20 -1.13 4.55 16 20 N -0.53 -9.36 10.35 -12.61 -0.13 -9.49 16 21 C 0.14 2.33 6.62 -84.79 -0.56 1.77 16 22 C 0.10 1.49 7.31 -39.40 -0.29 1.20 16 23 F -0.13 -1.86 17.16 2.25 0.04 -1.82 16 24 C -0.12 -1.26 9.92 -39.85 -0.40 -1.66 16 25 C -0.12 -1.16 9.95 -39.90 -0.40 -1.56 16 26 C -0.06 -0.81 8.66 -39.61 -0.34 -1.15 16 27 C -0.14 -2.34 5.68 -106.69 -0.61 -2.94 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 33 H 0.15 2.46 7.03 -51.93 -0.37 2.10 16 34 H 0.11 1.39 6.24 -51.93 -0.32 1.06 16 35 H 0.04 0.88 5.21 -51.93 -0.27 0.61 16 36 H 0.04 0.95 6.90 -51.93 -0.36 0.60 16 37 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.19 2.71 8.06 -52.49 -0.42 2.28 16 39 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 41 H 0.15 1.70 6.56 -52.49 -0.34 1.36 16 LS Contribution 346.89 15.07 5.23 5.23 Total: -1.00 -33.33 346.89 -8.81 -42.14 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -4.61 Total: 0.51 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -4.02 Total: 7.51 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.18 Total: -54.53 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.61 Total: -15.79 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.66 Total: 16.75 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.33 -8.81 -42.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.841 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds