Wall clock time and date at job start Tue Mar 31 2020 19:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45196 * 109.47420 * 2 1 4 4 C 1.34232 * 117.00101 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99922 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.99833 * 180.02562 * 4 3 2 7 7 N 1.46497 * 109.47059 * 180.02562 * 6 4 3 8 8 C 1.46499 * 120.00185 * 89.99656 * 7 6 4 9 9 C 1.50698 * 109.47370 * 264.46331 * 8 7 6 10 10 H 1.08003 * 120.00267 * 324.71535 * 9 8 7 11 11 C 1.37873 * 119.99977 * 144.70798 * 9 8 7 12 12 N 1.31520 * 120.00025 * 6.47337 * 11 9 8 13 13 Si 1.86802 * 119.99936 * 186.47242 * 11 9 8 14 14 H 1.48507 * 109.47310 * 90.00292 * 13 11 9 15 15 H 1.48509 * 109.47175 * 209.99926 * 13 11 9 16 16 H 1.48497 * 109.47514 * 330.00101 * 13 11 9 17 17 C 1.38365 * 120.00112 * 269.99911 * 7 6 4 18 18 N 1.33190 * 118.68556 * 174.74260 * 17 7 6 19 19 C 1.31637 * 121.56402 * 180.02562 * 18 17 7 20 20 C 1.40752 * 118.48458 * 359.97438 * 19 18 17 21 21 C 1.40237 * 122.02614 * 180.02562 * 20 19 18 22 22 C 1.36429 * 119.48630 * 179.97438 * 21 20 19 23 23 F 1.35110 * 119.54521 * 179.97438 * 22 21 20 24 24 C 1.39525 * 120.90530 * 359.97438 * 22 21 20 25 25 C 1.36197 * 121.04574 * 359.97438 * 24 22 21 26 26 C 1.40263 * 119.62902 * 0.04524 * 25 24 22 27 27 N 1.31852 * 118.68101 * 354.47476 * 17 7 6 28 28 H 1.08995 * 109.47317 * 59.99455 * 1 2 3 29 29 H 1.09000 * 109.47170 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46801 * 299.99528 * 1 2 3 31 31 H 1.09004 * 109.46284 * 240.00375 * 2 1 3 32 32 H 1.08995 * 109.47317 * 120.00545 * 2 1 3 33 33 H 1.08996 * 109.47544 * 59.99698 * 6 4 3 34 34 H 1.09005 * 109.47193 * 299.99591 * 6 4 3 35 35 H 1.09007 * 109.47096 * 144.46467 * 8 7 6 36 36 H 1.09000 * 109.46982 * 24.46837 * 8 7 6 37 37 H 0.97004 * 119.99801 * 180.02562 * 12 11 9 38 38 H 1.08002 * 120.76168 * 179.97438 * 19 18 17 39 39 H 1.07995 * 120.25186 * 0.02562 * 21 20 19 40 40 H 1.07997 * 119.47552 * 180.02562 * 24 22 21 41 41 H 1.07997 * 120.19150 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9208 2.9372 0.0000 7 7 5.3838 2.8605 -0.0014 8 6 6.1142 2.8231 -1.2707 9 6 6.4092 1.3918 -1.6385 10 1 6.6321 0.6706 -0.8661 11 6 6.3945 1.0028 -2.9612 12 7 6.2495 1.9024 -3.9096 13 14 6.5805 -0.8019 -3.4061 14 1 5.2401 -1.4387 -3.4620 15 1 7.2400 -0.9196 -4.7315 16 1 7.4092 -1.4822 -2.3788 17 6 6.0758 2.8234 1.1963 18 7 7.3956 2.6470 1.1668 19 6 8.1096 2.6023 2.2718 20 6 7.4472 2.7464 3.5053 21 6 8.1346 2.7110 4.7272 22 6 7.4406 2.8568 5.8926 23 9 8.1016 2.8224 7.0705 24 6 6.0575 3.0410 5.8848 25 6 5.3608 3.0810 4.7152 26 6 6.0412 2.9343 3.4975 27 7 5.4028 2.9694 2.3207 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.5853 3.4689 0.8904 34 1 3.5845 3.4699 -0.8896 35 1 7.0503 3.3721 -1.1677 36 1 5.5082 3.2816 -2.0522 37 1 6.2388 1.6286 -4.8401 38 1 9.1793 2.4582 2.2329 39 1 9.2052 2.5703 4.7453 40 1 5.5312 3.1543 6.8211 41 1 4.2905 3.2247 4.7253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157161294.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:37 Heat of formation + Delta-G solvation = -42.553779 kcal Electronic energy + Delta-G solvation = -28394.564296 eV Core-core repulsion = 24190.116465 eV Total energy + Delta-G solvation = -4204.447831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.83974 -40.94701 -39.83386 -37.78736 -36.28428 -35.19075 -33.73214 -32.58905 -31.62290 -31.17618 -29.45402 -28.59886 -26.25484 -24.69889 -23.59442 -23.07578 -22.35495 -21.67336 -20.47587 -18.33209 -18.05678 -17.35351 -17.24977 -16.39683 -16.23599 -15.93898 -15.63307 -15.52283 -15.43110 -14.72487 -14.49041 -14.35577 -14.06926 -13.83148 -13.47525 -13.30712 -13.05582 -12.97619 -12.68334 -12.36572 -12.02353 -11.82618 -11.55829 -11.48098 -11.38159 -11.27267 -11.02327 -10.82574 -10.70743 -10.66948 -10.17277 -10.15167 -9.94318 -9.43717 -9.19064 -8.68809 -8.59680 -8.46176 -7.12949 -6.08583 -4.08408 0.44332 0.99495 2.06683 2.83771 2.91259 3.15879 3.30160 3.36306 3.42376 3.49030 4.25561 4.40672 4.44392 4.46374 4.56643 4.67877 4.90522 4.97391 5.06333 5.08333 5.22985 5.24471 5.31706 5.44085 5.53414 5.65902 5.74065 5.76092 5.83706 5.87820 5.89599 6.00835 6.02950 6.11577 6.41538 6.69022 6.87942 6.93824 7.22012 7.39979 7.51884 7.90170 8.09315 8.20706 8.42206 8.74481 9.02544 9.54627 10.97109 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010451 B = 0.004123 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.630845 B = 6788.992657 C = 8548.957456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 O -0.369 6.369 4 C 0.437 3.563 5 O -0.468 6.468 6 C 0.144 3.856 7 N -0.538 5.538 8 C 0.239 3.761 9 C -0.492 4.492 10 H 0.063 0.937 11 C 0.061 3.939 12 N -0.898 5.898 13 Si 0.897 3.103 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.274 1.274 17 C 0.585 3.415 18 N -0.517 5.517 19 C 0.233 3.767 20 C -0.211 4.211 21 C -0.082 4.082 22 C 0.050 3.950 23 F -0.146 7.146 24 C -0.104 4.104 25 C -0.095 4.095 26 C 0.211 3.789 27 N -0.590 5.590 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.041 0.959 36 H 0.062 0.938 37 H 0.263 0.737 38 H 0.174 0.826 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.974 3.044 14.438 15.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.012 4.012 3 O -0.287 6.287 4 C 0.275 3.725 5 O -0.351 6.351 6 C 0.018 3.982 7 N -0.248 5.248 8 C 0.121 3.879 9 C -0.531 4.531 10 H 0.081 0.919 11 C -0.140 4.140 12 N -0.538 5.538 13 Si 0.725 3.275 14 H -0.209 1.209 15 H -0.214 1.214 16 H -0.199 1.199 17 C 0.230 3.770 18 N -0.233 5.233 19 C 0.047 3.953 20 C -0.219 4.219 21 C -0.103 4.103 22 C 0.030 3.970 23 F -0.125 7.125 24 C -0.126 4.126 25 C -0.115 4.115 26 C 0.078 3.922 27 N -0.318 5.318 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.191 0.809 39 H 0.158 0.842 40 H 0.155 0.845 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.514 2.794 13.052 14.442 hybrid contribution 0.657 -1.487 0.594 1.730 sum -4.857 1.307 13.646 14.543 Atomic orbital electron populations 1.21775 0.93148 1.02463 1.03223 1.22865 0.94766 0.81225 1.02304 1.86467 1.25493 1.31574 1.85170 1.24542 0.80173 0.94136 0.73599 1.90734 1.59791 1.42386 1.42190 1.20785 0.81121 0.90536 1.05792 1.47459 1.03276 1.70119 1.03995 1.19763 0.92459 0.98226 0.77414 1.21371 1.44986 0.94724 0.92017 0.91917 1.24934 0.95101 0.97588 0.96400 1.69916 1.50707 1.33075 1.00106 0.86512 0.78162 0.85467 0.77373 1.20870 1.21386 1.19883 1.19407 0.85103 0.86112 0.86375 1.67967 1.07144 1.16640 1.31544 1.23497 0.99876 0.86393 0.85492 1.19071 0.95632 1.11825 0.95401 1.20732 1.00354 0.99045 0.90199 1.17188 0.90547 1.08312 0.80997 1.91477 1.80930 1.94572 1.45546 1.20851 0.92351 0.99968 0.99447 1.20462 1.00493 1.01376 0.89188 1.18628 0.89283 0.92070 0.92178 1.68318 1.38492 1.28144 0.96834 0.91576 0.90750 0.91728 0.91491 0.91859 0.86484 0.86576 0.94094 0.91997 0.92751 0.80926 0.84236 0.84535 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.29 37.16 0.38 -1.20 16 2 C 0.06 0.93 6.19 37.16 0.23 1.16 16 3 O -0.37 -6.34 10.22 -39.26 -0.40 -6.74 16 4 C 0.44 8.77 8.03 36.00 0.29 9.06 16 5 O -0.47 -11.30 14.89 -18.75 -0.28 -11.58 16 6 C 0.14 2.63 6.08 -5.20 -0.03 2.59 16 7 N -0.54 -11.54 2.09 -178.78 -0.37 -11.91 16 8 C 0.24 5.86 5.48 -5.19 -0.03 5.83 16 9 C -0.49 -13.59 8.09 -34.44 -0.28 -13.87 16 10 H 0.06 1.87 7.79 -52.48 -0.41 1.46 16 11 C 0.06 1.71 5.45 -17.82 -0.10 1.62 16 12 N -0.90 -25.47 12.85 55.43 0.71 -24.76 16 13 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 16 14 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 16 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 17 C 0.59 12.16 8.12 -322.78 -2.62 9.54 16 18 N -0.52 -10.47 9.17 -13.51 -0.12 -10.59 16 19 C 0.23 3.65 11.15 -16.69 -0.19 3.46 16 20 C -0.21 -3.14 5.74 -106.81 -0.61 -3.75 16 21 C -0.08 -0.99 9.77 -39.48 -0.39 -1.37 16 22 C 0.05 0.60 7.24 -39.75 -0.29 0.31 16 23 F -0.15 -1.76 17.24 2.25 0.04 -1.72 16 24 C -0.10 -1.17 9.92 -39.84 -0.40 -1.57 16 25 C -0.10 -1.24 10.00 -39.55 -0.40 -1.63 16 26 C 0.21 3.43 6.62 -84.81 -0.56 2.87 16 27 N -0.59 -11.07 9.04 -11.93 -0.11 -11.17 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 32 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 33 H 0.12 1.86 7.23 -51.93 -0.38 1.49 16 34 H 0.12 1.88 7.86 -51.93 -0.41 1.47 16 35 H 0.04 1.04 7.59 -51.92 -0.39 0.64 16 36 H 0.06 1.57 7.08 -51.93 -0.37 1.21 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.17 1.97 8.06 -52.49 -0.42 1.54 16 39 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 363.32 15.07 5.48 5.48 Total: -1.00 -33.18 363.32 -9.96 -43.14 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.89 Total: -0.55 kcal Atomic # 6 Polarization: 18.03 SS G_CDS: -4.98 Total: 13.05 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.11 Total: -58.44 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.68 Total: -18.32 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.18 -9.96 -43.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161294.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.585 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds