Wall clock time and date at job start Tue Mar 31 2020 19:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45196 * 109.47420 * 2 1 4 4 C 1.34232 * 117.00101 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99922 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.99833 * 180.02562 * 4 3 2 7 7 N 1.46497 * 109.47059 * 180.02562 * 6 4 3 8 8 C 1.46499 * 120.00185 * 89.99656 * 7 6 4 9 9 C 1.50698 * 109.47370 * 264.46331 * 8 7 6 10 10 H 1.08003 * 120.00267 * 324.71535 * 9 8 7 11 11 C 1.37873 * 119.99977 * 144.70798 * 9 8 7 12 12 N 1.31520 * 120.00025 * 6.47337 * 11 9 8 13 13 Si 1.86802 * 119.99936 * 186.47242 * 11 9 8 14 14 H 1.48507 * 109.47310 * 90.00292 * 13 11 9 15 15 H 1.48509 * 109.47175 * 209.99926 * 13 11 9 16 16 H 1.48497 * 109.47514 * 330.00101 * 13 11 9 17 17 C 1.38365 * 120.00112 * 269.99911 * 7 6 4 18 18 N 1.33190 * 118.68556 * 174.74260 * 17 7 6 19 19 C 1.31637 * 121.56402 * 180.02562 * 18 17 7 20 20 C 1.40752 * 118.48458 * 359.97438 * 19 18 17 21 21 C 1.40237 * 122.02614 * 180.02562 * 20 19 18 22 22 C 1.36429 * 119.48630 * 179.97438 * 21 20 19 23 23 F 1.35110 * 119.54521 * 179.97438 * 22 21 20 24 24 C 1.39525 * 120.90530 * 359.97438 * 22 21 20 25 25 C 1.36197 * 121.04574 * 359.97438 * 24 22 21 26 26 C 1.40263 * 119.62902 * 0.04524 * 25 24 22 27 27 N 1.31852 * 118.68101 * 354.47476 * 17 7 6 28 28 H 1.08995 * 109.47317 * 59.99455 * 1 2 3 29 29 H 1.09000 * 109.47170 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46801 * 299.99528 * 1 2 3 31 31 H 1.09004 * 109.46284 * 240.00375 * 2 1 3 32 32 H 1.08995 * 109.47317 * 120.00545 * 2 1 3 33 33 H 1.08996 * 109.47544 * 59.99698 * 6 4 3 34 34 H 1.09005 * 109.47193 * 299.99591 * 6 4 3 35 35 H 1.09007 * 109.47096 * 144.46467 * 8 7 6 36 36 H 1.09000 * 109.46982 * 24.46837 * 8 7 6 37 37 H 0.97004 * 119.99801 * 180.02562 * 12 11 9 38 38 H 1.08002 * 120.76168 * 179.97438 * 19 18 17 39 39 H 1.07995 * 120.25186 * 0.02562 * 21 20 19 40 40 H 1.07997 * 119.47552 * 180.02562 * 24 22 21 41 41 H 1.07997 * 120.19150 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9208 2.9372 0.0000 7 7 5.3838 2.8605 -0.0014 8 6 6.1142 2.8231 -1.2707 9 6 6.4092 1.3918 -1.6385 10 1 6.6321 0.6706 -0.8661 11 6 6.3945 1.0028 -2.9612 12 7 6.2495 1.9024 -3.9096 13 14 6.5805 -0.8019 -3.4061 14 1 5.2401 -1.4387 -3.4620 15 1 7.2400 -0.9196 -4.7315 16 1 7.4092 -1.4822 -2.3788 17 6 6.0758 2.8234 1.1963 18 7 7.3956 2.6470 1.1668 19 6 8.1096 2.6023 2.2718 20 6 7.4472 2.7464 3.5053 21 6 8.1346 2.7110 4.7272 22 6 7.4406 2.8568 5.8926 23 9 8.1016 2.8224 7.0705 24 6 6.0575 3.0410 5.8848 25 6 5.3608 3.0810 4.7152 26 6 6.0412 2.9343 3.4975 27 7 5.4028 2.9694 2.3207 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.5853 3.4689 0.8904 34 1 3.5845 3.4699 -0.8896 35 1 7.0503 3.3721 -1.1677 36 1 5.5082 3.2816 -2.0522 37 1 6.2388 1.6286 -4.8401 38 1 9.1793 2.4582 2.2329 39 1 9.2052 2.5703 4.7453 40 1 5.5312 3.1543 6.8211 41 1 4.2905 3.2247 4.7253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157161294.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:36 Heat of formation + Delta-G solvation = -59.233674 kcal Electronic energy + Delta-G solvation = -28395.287590 eV Core-core repulsion = 24190.116465 eV Total energy + Delta-G solvation = -4205.171125 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.82189 -42.22299 -41.33256 -39.07109 -37.69061 -36.73538 -35.15319 -34.47744 -32.76395 -32.29549 -30.67914 -30.29025 -27.89333 -25.88470 -25.22206 -24.35043 -23.46667 -23.09973 -21.90842 -19.60915 -19.27985 -18.95236 -18.61758 -18.16051 -17.61401 -17.31686 -16.86038 -16.78316 -16.62025 -16.53158 -15.84980 -15.52277 -15.32134 -15.01142 -14.92085 -14.58029 -14.37488 -14.13458 -14.05393 -13.69929 -13.51113 -13.26152 -13.11587 -12.90991 -12.68652 -12.63751 -12.51113 -12.44843 -12.26062 -12.04477 -11.88552 -11.79357 -11.50494 -11.32095 -10.64179 -10.43269 -10.00335 -9.84470 -8.59781 -8.13870 -6.24184 -0.66685 -0.18268 0.90445 1.28946 1.31638 1.34830 1.42652 1.51240 1.97508 2.05525 2.38810 3.11368 3.14684 3.21024 3.28415 3.49792 3.59032 3.67177 3.87509 3.96010 4.00005 4.11295 4.15562 4.24796 4.31676 4.37709 4.57488 4.67179 4.82058 4.85897 4.91236 4.96158 5.05273 5.10771 5.12959 5.20447 5.40911 5.49975 5.68114 5.73352 5.89566 6.02684 6.15808 6.59455 6.82317 6.90908 7.34818 7.44577 8.85492 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010451 B = 0.004123 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.630845 B = 6788.992657 C = 8548.957456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.053 3.947 3 O -0.362 6.362 4 C 0.438 3.562 5 O -0.517 6.517 6 C 0.146 3.854 7 N -0.556 5.556 8 C 0.262 3.738 9 C -0.493 4.493 10 H 0.033 0.967 11 C 0.021 3.979 12 N -0.921 5.921 13 Si 0.944 3.056 14 H -0.285 1.285 15 H -0.273 1.273 16 H -0.281 1.281 17 C 0.566 3.434 18 N -0.567 5.567 19 C 0.234 3.766 20 C -0.213 4.213 21 C -0.078 4.078 22 C 0.055 3.945 23 F -0.141 7.141 24 C -0.086 4.086 25 C -0.102 4.102 26 C 0.178 3.822 27 N -0.595 5.595 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.026 0.974 36 H 0.049 0.951 37 H 0.266 0.734 38 H 0.211 0.789 39 H 0.171 0.829 40 H 0.172 0.828 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.413 3.123 17.129 18.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.020 4.020 3 O -0.279 6.279 4 C 0.279 3.721 5 O -0.403 6.403 6 C 0.020 3.980 7 N -0.268 5.268 8 C 0.142 3.858 9 C -0.532 4.532 10 H 0.052 0.948 11 C -0.178 4.178 12 N -0.562 5.562 13 Si 0.771 3.229 14 H -0.212 1.212 15 H -0.198 1.198 16 H -0.206 1.206 17 C 0.211 3.789 18 N -0.284 5.284 19 C 0.051 3.949 20 C -0.221 4.221 21 C -0.099 4.099 22 C 0.035 3.965 23 F -0.120 7.120 24 C -0.107 4.107 25 C -0.121 4.121 26 C 0.048 3.952 27 N -0.322 5.322 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.158 0.842 34 H 0.150 0.850 35 H 0.044 0.956 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.228 0.772 39 H 0.188 0.812 40 H 0.190 0.810 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.954 2.887 15.826 17.154 hybrid contribution 0.832 -1.498 0.124 1.717 sum -5.122 1.389 15.950 16.810 Atomic orbital electron populations 1.21786 0.89404 1.04327 1.04010 1.23178 0.97625 0.79903 1.01339 1.86474 1.23930 1.33062 1.84414 1.24980 0.80687 0.94334 0.72116 1.90708 1.61013 1.43912 1.44715 1.20993 0.79589 0.89827 1.07576 1.46895 1.04194 1.72296 1.03422 1.19182 0.91913 0.96050 0.78631 1.21344 1.44903 0.95581 0.91364 0.94844 1.25470 0.95362 1.00509 0.96463 1.69969 1.51887 1.34090 1.00259 0.85788 0.77765 0.81943 0.77435 1.21160 1.19781 1.20646 1.19473 0.85600 0.87292 0.86576 1.67937 1.07466 1.19159 1.33824 1.24179 1.01313 0.84477 0.84897 1.19226 0.95302 1.11347 0.96185 1.20963 1.01898 0.98035 0.88987 1.17353 0.90969 1.07081 0.81062 1.91505 1.80903 1.94395 1.45219 1.21203 0.92116 0.97220 1.00190 1.20639 1.01399 1.01702 0.88397 1.19199 0.90513 0.93097 0.92388 1.68259 1.38820 1.28054 0.97101 0.91175 0.88324 0.90499 0.93263 0.92183 0.84196 0.84961 0.95622 0.93272 0.92525 0.77239 0.81161 0.81018 0.82590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 10.29 71.98 0.74 -1.96 16 2 C 0.05 1.59 6.19 71.98 0.45 2.04 16 3 O -0.36 -12.49 10.22 -51.43 -0.53 -13.02 16 4 C 0.44 18.09 8.03 71.23 0.57 18.66 16 5 O -0.52 -26.05 14.89 21.97 0.33 -25.72 16 6 C 0.15 5.44 6.08 85.63 0.52 5.96 16 7 N -0.56 -24.80 2.09 -719.55 -1.51 -26.31 16 8 C 0.26 13.48 5.48 85.63 0.47 13.95 16 9 C -0.49 -28.39 8.09 25.60 0.21 -28.18 16 10 H 0.03 2.10 7.79 -2.91 -0.02 2.07 16 11 C 0.02 1.20 5.45 84.65 0.46 1.66 16 12 N -0.92 -53.42 12.85 21.45 0.28 -53.14 16 13 Si 0.94 47.06 29.54 68.60 2.03 49.08 16 14 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 15 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 16 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 17 C 0.57 24.26 8.12 261.48 2.12 26.38 16 18 N -0.57 -23.62 9.17 -196.67 -1.80 -25.42 16 19 C 0.23 7.21 11.15 85.34 0.95 8.16 16 20 C -0.21 -6.02 5.74 -21.28 -0.12 -6.14 16 21 C -0.08 -1.62 9.77 22.33 0.22 -1.41 16 22 C 0.06 1.12 7.24 22.16 0.16 1.28 16 23 F -0.14 -2.82 17.24 44.97 0.78 -2.04 16 24 C -0.09 -1.59 9.92 22.10 0.22 -1.37 16 25 C -0.10 -2.39 10.00 22.29 0.22 -2.17 16 26 C 0.18 5.63 6.62 40.21 0.27 5.90 16 27 N -0.60 -22.48 9.04 -191.67 -1.73 -24.21 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.05 1.63 8.13 -2.38 -0.02 1.61 16 32 H 0.06 1.81 8.13 -2.39 -0.02 1.79 16 33 H 0.14 4.47 7.23 -2.39 -0.02 4.45 16 34 H 0.13 4.38 7.86 -2.38 -0.02 4.36 16 35 H 0.03 1.38 7.59 -2.38 -0.02 1.36 16 36 H 0.05 2.62 7.08 -2.39 -0.02 2.60 16 37 H 0.27 14.61 8.31 -92.70 -0.77 13.84 16 38 H 0.21 4.44 8.06 -2.91 -0.02 4.42 16 39 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -75.40 363.32 6.36 -69.04 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.07 Total: 8.98 kcal Atomic # 6 Polarization: 35.31 SS G_CDS: 7.46 Total: 42.76 kcal Atomic # 7 Polarization: -124.31 SS G_CDS: -4.77 Total: -129.08 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -0.20 Total: -38.74 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.04 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.08 kcal Total: -75.40 6.36 -69.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161294.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.807 kcal (2) G-P(sol) polarization free energy of solvation -75.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds