Wall clock time and date at job start Tue Mar 31 2020 19:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45191 * 109.47304 * 2 1 4 4 C 1.34887 * 117.00001 * 179.97438 * 3 2 1 5 5 O 1.21606 * 119.99838 * 0.02562 * 4 3 2 6 6 C 1.46519 * 119.99986 * 179.97438 * 4 3 2 7 7 C 1.36816 * 126.86401 * 180.02562 * 6 4 3 8 8 C 1.50704 * 126.08903 * 359.92672 * 7 6 4 9 9 N 1.46903 * 109.46831 * 90.00252 * 8 7 6 10 10 N 1.33262 * 107.82007 * 180.19627 * 7 6 4 11 11 C 1.30905 * 109.75123 * 359.61805 * 10 7 6 12 12 N 1.34684 * 109.16138 * 0.38564 * 11 10 7 13 13 C 1.40221 * 126.50329 * 179.76656 * 12 11 10 14 14 C 1.39078 * 119.95673 * 64.72649 * 13 12 11 15 15 C 1.38593 * 120.47216 * 179.76008 * 14 13 12 16 16 C 1.37601 * 120.38787 * 0.51995 * 15 14 13 17 17 C 1.40753 * 119.90380 * 359.73916 * 16 15 14 18 18 C 1.41306 * 120.23472 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00392 * 154.72510 * 18 17 16 20 20 C 1.39932 * 120.00175 * 334.72660 * 18 17 16 21 21 N 1.30851 * 119.99528 * 342.87439 * 20 18 17 22 22 Si 1.86798 * 120.00097 * 162.87358 * 20 18 17 23 23 H 1.48497 * 109.46919 * 90.00311 * 22 20 18 24 24 H 1.48508 * 109.46905 * 209.99885 * 22 20 18 25 25 H 1.48497 * 109.47199 * 329.99934 * 22 20 18 26 26 C 1.38550 * 119.95545 * 245.00089 * 13 12 11 27 27 F 1.35098 * 120.19572 * 359.95695 * 26 13 12 28 28 H 1.08998 * 109.47030 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46901 * 300.00303 * 1 2 3 30 30 H 1.09004 * 109.46558 * 59.99757 * 1 2 3 31 31 H 1.08999 * 109.47252 * 239.99407 * 2 1 3 32 32 H 1.09004 * 109.46558 * 120.00243 * 2 1 3 33 33 H 1.08995 * 109.47149 * 330.00602 * 8 7 6 34 34 H 1.08997 * 109.47109 * 209.99891 * 8 7 6 35 35 H 1.00898 * 111.00217 * 180.02562 * 9 8 7 36 36 H 1.00901 * 110.99875 * 303.95527 * 9 8 7 37 37 H 1.07998 * 125.42170 * 180.15488 * 11 10 7 38 38 H 1.08002 * 119.75894 * 359.97438 * 14 13 12 39 39 H 1.08001 * 119.80422 * 180.25549 * 15 14 13 40 40 H 1.08001 * 120.04985 * 179.71893 * 16 15 14 41 41 H 0.96998 * 119.99781 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3513 1.5456 0.0005 5 8 4.0920 0.5811 0.0005 6 6 3.9114 2.8995 0.0000 7 6 5.2366 3.2395 -0.0001 8 6 6.3992 2.2805 0.0020 9 7 6.7774 1.9667 -1.3824 10 7 5.3163 4.5697 0.0037 11 6 4.1130 5.0850 -0.0020 12 7 3.2058 4.0896 -0.0013 13 6 1.8109 4.2322 -0.0017 14 6 1.1725 4.8136 -1.0920 15 6 -0.2060 4.9554 -1.1059 16 6 -0.9601 4.5321 -0.0355 17 6 -0.3303 3.9463 1.0786 18 6 -1.0978 3.5096 2.1818 19 1 -0.7224 2.7274 2.8251 20 6 -2.3442 4.0904 2.4408 21 7 -2.6577 5.2373 1.8943 22 14 -3.5604 3.2286 3.5666 23 1 -3.3402 3.6734 4.9662 24 1 -4.9454 3.5679 3.1515 25 1 -3.3627 1.7596 3.4771 26 6 1.0708 3.7990 1.0865 27 9 1.6890 3.2382 2.1488 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 6.1129 1.3636 0.5171 34 1 7.2455 2.7367 0.5154 35 1 7.5552 1.3245 -1.4080 36 1 5.9907 1.6021 -1.8984 37 1 3.8840 6.1405 -0.0031 38 1 1.7551 5.1539 -1.9354 39 1 -0.6909 5.4047 -1.9599 40 1 -2.0336 4.6494 -0.0502 41 1 -3.5219 5.6397 2.0735 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162537651.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:54 Heat of formation + Delta-G solvation = -51.291589 kcal Electronic energy + Delta-G solvation = -29703.129323 eV Core-core repulsion = 25498.302592 eV Total energy + Delta-G solvation = -4204.826731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -47.57254 -42.11598 -39.74352 -37.75381 -36.35377 -35.00871 -34.10292 -32.79767 -31.45673 -30.09268 -29.64946 -28.40483 -25.74820 -25.33264 -23.58436 -22.75470 -21.97988 -21.22598 -20.34099 -19.54460 -18.47089 -17.05091 -16.65652 -16.38011 -16.24761 -15.87824 -15.79486 -15.28927 -15.03518 -14.79521 -14.35095 -14.27010 -13.92821 -13.57728 -13.52179 -13.25532 -13.13906 -12.78207 -12.49935 -12.23833 -12.01741 -11.90148 -11.64535 -11.58423 -11.35608 -11.31830 -11.12595 -10.75492 -10.57463 -10.34763 -10.25574 -10.16955 -9.90504 -9.50862 -9.46103 -8.62733 -8.36366 -7.87410 -7.66357 -7.11214 -4.72187 1.27130 2.19045 2.36806 2.81733 2.90153 2.90289 2.96143 3.00581 3.11266 3.31207 3.69350 4.19693 4.56272 4.83590 4.95471 5.08439 5.17139 5.22075 5.24749 5.32380 5.44403 5.46452 5.78291 5.81832 5.87942 5.96796 6.08469 6.15499 6.23939 6.34682 6.46806 6.56157 6.64750 6.71441 6.83825 6.93131 7.15170 7.17949 7.36385 7.51842 7.55144 7.62529 7.80817 7.96182 8.14330 8.19547 8.41459 8.46774 9.82328 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015823 B = 0.004477 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.147582 B = 6253.050286 C = 7044.276835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.068 3.932 3 O -0.330 6.330 4 C 0.550 3.450 5 O -0.516 6.516 6 C -0.071 4.071 7 C 0.101 3.899 8 C 0.139 3.861 9 N -0.838 5.838 10 N -0.488 5.488 11 C 0.228 3.772 12 N -0.363 5.363 13 C 0.084 3.916 14 C -0.204 4.204 15 C -0.100 4.100 16 C -0.133 4.133 17 C 0.094 3.906 18 C -0.443 4.443 19 H 0.085 0.915 20 C 0.077 3.923 21 N -0.782 5.782 22 Si 0.913 3.087 23 H -0.267 1.267 24 H -0.273 1.273 25 H -0.258 1.258 26 C 0.016 3.984 27 F -0.151 7.151 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.341 0.659 36 H 0.341 0.659 37 H 0.214 0.786 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.131 0.869 41 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 -4.833 -3.745 7.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.006 4.006 3 O -0.246 6.246 4 C 0.396 3.604 5 O -0.407 6.407 6 C -0.185 4.185 7 C -0.037 4.037 8 C 0.008 3.992 9 N -0.368 5.368 10 N -0.206 5.206 11 C -0.054 4.054 12 N -0.038 5.038 13 C -0.006 4.006 14 C -0.225 4.225 15 C -0.119 4.119 16 C -0.152 4.152 17 C 0.090 3.910 18 C -0.472 4.472 19 H 0.103 0.897 20 C -0.143 4.143 21 N -0.406 5.406 22 Si 0.737 3.263 23 H -0.191 1.191 24 H -0.197 1.197 25 H -0.181 1.181 26 C -0.005 4.005 27 F -0.130 7.130 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.230 0.770 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.149 0.851 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.194 -3.745 -3.742 6.754 hybrid contribution -1.566 -1.697 0.940 2.493 sum 2.628 -5.442 -2.802 6.662 Atomic orbital electron populations 1.21791 0.92191 1.02290 1.04718 1.22995 0.95848 0.80000 1.01759 1.86842 1.22499 1.31954 1.83282 1.19510 0.81173 0.87385 0.72348 1.90791 1.60637 1.40869 1.48398 1.19972 0.92066 0.84611 1.21831 1.20724 0.90694 0.91540 1.00700 1.20078 0.93481 0.94984 0.90640 1.58718 1.12192 1.52639 1.13234 1.70131 1.22114 1.07398 1.20962 1.25253 0.82922 0.95906 1.01319 1.42805 1.06185 1.05550 1.49309 1.17429 0.77644 1.08616 0.96931 1.20103 0.94833 1.10500 0.97055 1.20571 0.92445 1.00552 0.98340 1.21317 1.00234 1.02138 0.91544 1.17457 0.87832 0.91760 0.93978 1.19503 1.00517 1.17590 1.09542 0.89686 1.25934 0.98585 0.93765 0.96007 1.69776 1.22153 1.12770 1.35928 0.86201 0.78881 0.81025 0.80211 1.19146 1.19726 1.18130 1.17648 0.90599 1.07747 0.84527 1.91312 1.82898 1.83711 1.55115 0.90734 0.90466 0.91389 0.91754 0.91573 0.92343 0.89653 0.84600 0.84726 0.76974 0.87729 0.87618 0.85110 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 10.29 37.16 0.38 -1.79 16 2 C 0.07 1.06 6.20 37.16 0.23 1.29 16 3 O -0.33 -6.43 7.39 -41.01 -0.30 -6.73 16 4 C 0.55 10.76 7.92 34.07 0.27 11.03 16 5 O -0.52 -9.81 14.62 -19.35 -0.28 -10.09 16 6 C -0.07 -1.39 6.65 -82.10 -0.55 -1.94 16 7 C 0.10 1.84 6.66 -82.48 -0.55 1.29 16 8 C 0.14 2.14 6.78 -4.97 -0.03 2.10 16 9 N -0.84 -11.45 9.61 -11.41 -0.11 -11.56 16 10 N -0.49 -8.98 11.20 -10.57 -0.12 -9.10 16 11 C 0.23 4.02 12.41 -90.36 -1.12 2.90 16 12 N -0.36 -7.17 2.66 -58.66 -0.16 -7.33 16 13 C 0.08 1.77 4.92 -83.59 -0.41 1.35 16 14 C -0.20 -4.02 9.90 -39.14 -0.39 -4.40 16 15 C -0.10 -1.97 10.01 -39.68 -0.40 -2.37 16 16 C -0.13 -2.95 8.68 -38.86 -0.34 -3.29 16 17 C 0.09 2.23 5.57 -106.78 -0.59 1.63 16 18 C -0.44 -10.63 8.78 -37.78 -0.33 -10.96 16 19 H 0.09 2.04 7.74 -52.48 -0.41 1.64 16 20 C 0.08 1.72 5.15 -17.34 -0.09 1.63 16 21 N -0.78 -17.79 10.97 55.55 0.61 -17.18 16 22 Si 0.91 16.85 29.59 -169.99 -5.03 11.82 16 23 H -0.27 -4.96 7.11 56.52 0.40 -4.55 16 24 H -0.27 -4.87 7.11 56.52 0.40 -4.46 16 25 H -0.26 -4.73 7.11 56.52 0.40 -4.32 16 26 C 0.02 0.38 5.82 -38.47 -0.22 0.15 16 27 F -0.15 -3.68 16.04 2.25 0.04 -3.65 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.92 6.48 -51.93 -0.34 0.58 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.34 3.66 9.08 -39.29 -0.36 3.31 16 36 H 0.34 4.83 8.99 -39.29 -0.35 4.48 16 37 H 0.21 2.97 8.06 -52.49 -0.42 2.55 16 38 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.13 2.96 6.19 -52.49 -0.32 2.63 16 41 H 0.29 5.90 8.30 -40.82 -0.34 5.56 16 LS Contribution 358.92 15.07 5.41 5.41 Total: -1.00 -27.11 358.92 -8.80 -35.92 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -4.72 Total: 13.86 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -4.14 Total: -1.37 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 0.23 Total: -45.16 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.59 Total: -16.82 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.04 Total: -3.65 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.82 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.11 -8.80 -35.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162537651.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.376 kcal (2) G-P(sol) polarization free energy of solvation -27.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds