Wall clock time and date at job start Tue Mar 31 2020 19:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45191 * 109.47304 * 2 1 4 4 C 1.34887 * 117.00001 * 179.97438 * 3 2 1 5 5 O 1.21606 * 119.99838 * 0.02562 * 4 3 2 6 6 C 1.46519 * 119.99986 * 179.97438 * 4 3 2 7 7 C 1.36816 * 126.86401 * 180.02562 * 6 4 3 8 8 C 1.50704 * 126.08903 * 359.92672 * 7 6 4 9 9 N 1.46903 * 109.46831 * 90.00252 * 8 7 6 10 10 N 1.33262 * 107.82007 * 180.19627 * 7 6 4 11 11 C 1.30905 * 109.75123 * 359.61805 * 10 7 6 12 12 N 1.34684 * 109.16138 * 0.38564 * 11 10 7 13 13 C 1.40221 * 126.50329 * 179.76656 * 12 11 10 14 14 C 1.39078 * 119.95673 * 64.72649 * 13 12 11 15 15 C 1.38593 * 120.47216 * 179.76008 * 14 13 12 16 16 C 1.37601 * 120.38787 * 0.51995 * 15 14 13 17 17 C 1.40753 * 119.90380 * 359.73916 * 16 15 14 18 18 C 1.41306 * 120.23472 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00392 * 154.72510 * 18 17 16 20 20 C 1.39932 * 120.00175 * 334.72660 * 18 17 16 21 21 N 1.30851 * 119.99528 * 342.87439 * 20 18 17 22 22 Si 1.86798 * 120.00097 * 162.87358 * 20 18 17 23 23 H 1.48497 * 109.46919 * 90.00311 * 22 20 18 24 24 H 1.48508 * 109.46905 * 209.99885 * 22 20 18 25 25 H 1.48497 * 109.47199 * 329.99934 * 22 20 18 26 26 C 1.38550 * 119.95545 * 245.00089 * 13 12 11 27 27 F 1.35098 * 120.19572 * 359.95695 * 26 13 12 28 28 H 1.08998 * 109.47030 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46901 * 300.00303 * 1 2 3 30 30 H 1.09004 * 109.46558 * 59.99757 * 1 2 3 31 31 H 1.08999 * 109.47252 * 239.99407 * 2 1 3 32 32 H 1.09004 * 109.46558 * 120.00243 * 2 1 3 33 33 H 1.08995 * 109.47149 * 330.00602 * 8 7 6 34 34 H 1.08997 * 109.47109 * 209.99891 * 8 7 6 35 35 H 1.00898 * 111.00217 * 180.02562 * 9 8 7 36 36 H 1.00901 * 110.99875 * 303.95527 * 9 8 7 37 37 H 1.07998 * 125.42170 * 180.15488 * 11 10 7 38 38 H 1.08002 * 119.75894 * 359.97438 * 14 13 12 39 39 H 1.08001 * 119.80422 * 180.25549 * 15 14 13 40 40 H 1.08001 * 120.04985 * 179.71893 * 16 15 14 41 41 H 0.96998 * 119.99781 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3513 1.5456 0.0005 5 8 4.0920 0.5811 0.0005 6 6 3.9114 2.8995 0.0000 7 6 5.2366 3.2395 -0.0001 8 6 6.3992 2.2805 0.0020 9 7 6.7774 1.9667 -1.3824 10 7 5.3163 4.5697 0.0037 11 6 4.1130 5.0850 -0.0020 12 7 3.2058 4.0896 -0.0013 13 6 1.8109 4.2322 -0.0017 14 6 1.1725 4.8136 -1.0920 15 6 -0.2060 4.9554 -1.1059 16 6 -0.9601 4.5321 -0.0355 17 6 -0.3303 3.9463 1.0786 18 6 -1.0978 3.5096 2.1818 19 1 -0.7224 2.7274 2.8251 20 6 -2.3442 4.0904 2.4408 21 7 -2.6577 5.2373 1.8943 22 14 -3.5604 3.2286 3.5666 23 1 -3.3402 3.6734 4.9662 24 1 -4.9454 3.5679 3.1515 25 1 -3.3627 1.7596 3.4771 26 6 1.0708 3.7990 1.0865 27 9 1.6890 3.2382 2.1488 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 6.1129 1.3636 0.5171 34 1 7.2455 2.7367 0.5154 35 1 7.5552 1.3245 -1.4080 36 1 5.9907 1.6021 -1.8984 37 1 3.8840 6.1405 -0.0031 38 1 1.7551 5.1539 -1.9354 39 1 -0.6909 5.4047 -1.9599 40 1 -2.0336 4.6494 -0.0502 41 1 -3.5219 5.6397 2.0735 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162537651.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:53 Heat of formation + Delta-G solvation = -64.793252 kcal Electronic energy + Delta-G solvation = -29703.714799 eV Core-core repulsion = 25498.302592 eV Total energy + Delta-G solvation = -4205.412207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -49.38216 -43.55603 -41.18013 -39.39252 -37.78160 -36.46321 -35.54989 -34.27768 -32.72933 -31.74033 -31.06779 -29.97145 -27.42767 -26.69018 -24.89358 -24.25777 -23.35596 -22.88608 -21.83055 -20.96710 -20.03370 -18.57351 -18.21393 -17.94659 -17.80670 -17.40167 -17.20350 -16.64627 -16.57143 -16.20839 -16.00310 -15.76760 -15.27527 -15.09006 -14.91478 -14.71729 -14.63627 -14.05730 -13.92385 -13.64507 -13.58965 -13.37741 -13.10058 -12.98252 -12.86576 -12.80213 -12.52380 -12.25556 -12.06749 -11.96946 -11.78738 -11.57482 -11.36937 -11.13887 -10.99167 -9.91868 -9.65657 -9.54147 -9.32504 -8.77635 -6.49307 -0.19258 0.54564 0.71671 1.37735 1.40325 1.44680 1.51392 1.56130 1.67521 1.88579 2.16184 2.53614 3.24604 3.37876 3.47930 3.72696 3.79364 3.93528 3.95538 4.00504 4.03095 4.25865 4.34184 4.52377 4.56446 4.61765 4.74228 4.77796 4.83400 4.86928 5.01934 5.04767 5.14330 5.16119 5.36972 5.39150 5.49843 5.76938 5.87047 5.93261 6.05209 6.18291 6.45830 6.51327 6.54865 6.68489 6.71839 6.75600 8.18386 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015823 B = 0.004477 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.147582 B = 6253.050286 C = 7044.276835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.061 3.939 3 O -0.350 6.350 4 C 0.545 3.455 5 O -0.519 6.519 6 C -0.099 4.099 7 C 0.104 3.896 8 C 0.143 3.857 9 N -0.836 5.836 10 N -0.498 5.498 11 C 0.234 3.766 12 N -0.375 5.375 13 C 0.090 3.910 14 C -0.193 4.193 15 C -0.092 4.092 16 C -0.145 4.145 17 C 0.074 3.926 18 C -0.478 4.478 19 H 0.068 0.932 20 C 0.047 3.953 21 N -0.806 5.806 22 Si 0.975 3.025 23 H -0.267 1.267 24 H -0.257 1.257 25 H -0.260 1.260 26 C -0.010 4.010 27 F -0.166 7.166 28 H 0.110 0.890 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.359 0.641 36 H 0.338 0.662 37 H 0.247 0.753 38 H 0.132 0.868 39 H 0.140 0.860 40 H 0.123 0.877 41 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.637 -4.661 -4.913 7.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.012 4.012 3 O -0.266 6.266 4 C 0.391 3.609 5 O -0.410 6.410 6 C -0.212 4.212 7 C -0.033 4.033 8 C 0.011 3.989 9 N -0.368 5.368 10 N -0.216 5.216 11 C -0.047 4.047 12 N -0.052 5.052 13 C -0.001 4.001 14 C -0.213 4.213 15 C -0.111 4.111 16 C -0.165 4.165 17 C 0.070 3.930 18 C -0.507 4.507 19 H 0.086 0.914 20 C -0.171 4.171 21 N -0.431 5.431 22 Si 0.796 3.204 23 H -0.192 1.192 24 H -0.181 1.181 25 H -0.183 1.183 26 C -0.031 4.031 27 F -0.146 7.146 28 H 0.129 0.871 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.174 0.826 36 H 0.150 0.850 37 H 0.263 0.737 38 H 0.150 0.850 39 H 0.158 0.842 40 H 0.141 0.859 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.364 -3.583 -4.927 7.494 hybrid contribution -1.492 -1.721 1.219 2.583 sum 2.872 -5.304 -3.708 7.080 Atomic orbital electron populations 1.21774 0.91307 1.04085 1.02937 1.23273 0.96510 0.78743 1.02703 1.86836 1.22515 1.34028 1.83216 1.19604 0.81301 0.87580 0.72418 1.90765 1.60614 1.40901 1.48739 1.20222 0.92700 0.84826 1.23404 1.21216 0.91043 0.91980 0.99058 1.20091 0.92907 0.94233 0.91631 1.58689 1.12641 1.53392 1.12032 1.70193 1.22377 1.07439 1.21630 1.26016 0.82354 0.96946 0.99363 1.42851 1.05759 1.06137 1.50416 1.17487 0.78460 1.07658 0.96450 1.20453 0.95003 1.08850 0.97003 1.20910 0.92520 0.99222 0.98429 1.21332 1.00129 1.02920 0.92089 1.17720 0.88343 0.92313 0.94591 1.19572 1.02216 1.18473 1.10407 0.91364 1.26573 0.99321 0.94040 0.97128 1.69780 1.22985 1.13420 1.36877 0.85285 0.77267 0.79687 0.78165 1.19230 1.18131 1.18347 1.17866 0.90850 1.09234 0.85174 1.91258 1.83091 1.84207 1.55996 0.87114 0.93312 0.91935 0.89914 0.91415 0.92879 0.88429 0.82648 0.85015 0.73728 0.85004 0.84212 0.85887 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 10.29 71.98 0.74 -3.36 16 2 C 0.06 1.89 6.20 71.98 0.45 2.34 16 3 O -0.35 -13.82 7.39 -58.02 -0.43 -14.25 16 4 C 0.54 21.38 7.92 69.98 0.55 21.93 16 5 O -0.52 -19.62 14.62 19.49 0.28 -19.33 16 6 C -0.10 -3.84 6.65 39.94 0.27 -3.58 16 7 C 0.10 3.70 6.66 42.01 0.28 3.98 16 8 C 0.14 4.19 6.78 85.56 0.58 4.77 16 9 N -0.84 -21.45 9.61 -190.00 -1.83 -23.27 16 10 N -0.50 -17.53 11.20 -187.34 -2.10 -19.63 16 11 C 0.23 7.85 12.41 180.26 2.24 10.09 16 12 N -0.38 -14.49 2.66 -339.49 -0.90 -15.40 16 13 C 0.09 3.73 4.92 38.07 0.19 3.92 16 14 C -0.19 -7.19 9.90 22.56 0.22 -6.96 16 15 C -0.09 -3.47 10.01 22.20 0.22 -3.25 16 16 C -0.15 -6.46 8.68 22.73 0.20 -6.26 16 17 C 0.07 3.62 5.57 -21.26 -0.12 3.50 16 18 C -0.48 -23.88 8.78 23.44 0.21 -23.67 16 19 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 20 C 0.05 2.14 5.15 85.25 0.44 2.58 16 21 N -0.81 -36.96 10.97 21.83 0.24 -36.72 16 22 Si 0.98 34.81 29.59 68.60 2.03 36.84 16 23 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 24 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 25 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 26 C -0.01 -0.47 5.82 22.99 0.13 -0.34 16 27 F -0.17 -8.43 16.04 44.97 0.72 -7.71 16 28 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.05 1.62 6.48 -2.39 -0.02 1.61 16 34 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.36 7.00 9.08 -89.70 -0.81 6.19 16 36 H 0.34 9.14 8.99 -89.69 -0.81 8.33 16 37 H 0.25 6.17 8.06 -2.91 -0.02 6.15 16 38 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 39 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 40 H 0.12 5.62 6.19 -2.91 -0.02 5.60 16 41 H 0.30 12.12 8.30 -92.71 -0.77 11.35 16 Total: -1.00 -59.28 358.92 4.10 -55.18 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: -0.51 Total: 38.59 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 6.59 Total: 5.69 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -4.59 Total: -95.02 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.14 Total: -33.58 kcal Atomic # 9 Polarization: -8.43 SS G_CDS: 0.72 Total: -7.71 kcal Atomic # 14 Polarization: 34.81 SS G_CDS: 2.03 Total: 36.84 kcal Total: -59.28 4.10 -55.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162537651.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.615 kcal (2) G-P(sol) polarization free energy of solvation -59.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds