Wall clock time and date at job start Tue Mar 31 2020 19:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47022 * 2 1 4 4 C 1.34884 * 117.00338 * 179.97438 * 3 2 1 5 5 O 1.21623 * 119.99897 * 359.97438 * 4 3 2 6 6 C 1.46497 * 120.00582 * 179.97438 * 4 3 2 7 7 C 1.36815 * 126.86987 * 180.02562 * 6 4 3 8 8 C 1.50700 * 126.07617 * 359.96610 * 7 6 4 9 9 N 1.46902 * 109.47426 * 89.99777 * 8 7 6 10 10 N 1.33293 * 107.84476 * 180.22557 * 7 6 4 11 11 C 1.30882 * 109.77087 * 359.55955 * 10 7 6 12 12 N 1.34816 * 109.14457 * 0.44704 * 11 10 7 13 13 C 1.39451 * 126.51639 * 179.75112 * 12 11 10 14 14 C 1.38468 * 120.20413 * 64.69641 * 13 12 11 15 15 C 1.38324 * 120.23671 * 179.74444 * 14 13 12 16 16 C 1.38721 * 120.64765 * 0.51804 * 15 14 13 17 17 C 1.37784 * 120.39743 * 359.76083 * 16 15 14 18 18 F 1.35104 * 120.12473 * 180.02562 * 17 16 15 19 19 C 1.41018 * 119.75110 * 359.97438 * 17 16 15 20 20 C 1.41002 * 120.31544 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00250 * 205.07412 * 20 19 17 22 22 C 1.39981 * 120.00161 * 25.06285 * 20 19 17 23 23 N 1.30851 * 119.99632 * 29.84894 * 22 20 19 24 24 Si 1.86800 * 120.00512 * 209.84104 * 22 20 19 25 25 H 1.48505 * 109.46889 * 94.61883 * 24 22 20 26 26 H 1.48493 * 109.47456 * 214.61533 * 24 22 20 27 27 H 1.48498 * 109.46905 * 334.62000 * 24 22 20 28 28 H 1.08999 * 109.46709 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47407 * 300.00111 * 1 2 3 30 30 H 1.08996 * 109.46940 * 60.00339 * 1 2 3 31 31 H 1.08997 * 109.47407 * 239.99889 * 2 1 3 32 32 H 1.09005 * 109.47498 * 119.99674 * 2 1 3 33 33 H 1.09002 * 109.47513 * 330.00124 * 8 7 6 34 34 H 1.08997 * 109.47164 * 210.00158 * 8 7 6 35 35 H 1.00898 * 110.99601 * 56.04397 * 9 8 7 36 36 H 1.00901 * 111.00472 * 179.97438 * 9 8 7 37 37 H 1.08000 * 125.42436 * 180.17359 * 11 10 7 38 38 H 1.08000 * 119.88010 * 0.02562 * 14 13 12 39 39 H 1.08001 * 119.67387 * 180.28024 * 15 14 13 40 40 H 1.07994 * 119.80155 * 179.74577 * 16 15 14 41 41 H 0.97001 * 119.99996 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3511 1.5458 0.0005 5 8 4.0921 0.5813 0.0015 6 6 3.9111 2.8995 0.0000 7 6 5.2363 3.2397 -0.0001 8 6 6.3987 2.2806 0.0012 9 7 6.7767 1.9675 -1.3834 10 7 5.3165 4.5702 0.0044 11 6 4.1137 5.0862 -0.0022 12 7 3.2052 4.0901 -0.0014 13 6 1.8180 4.2322 -0.0022 14 6 1.1776 4.8106 -1.0851 15 6 -0.1989 4.9471 -1.0890 16 6 -0.9550 4.5182 -0.0079 17 6 -0.3447 3.9442 1.0859 18 9 -1.0865 3.5280 2.1355 19 6 1.0571 3.7918 1.1052 20 6 1.6941 3.2064 2.2186 21 1 2.7264 3.4394 2.4344 22 6 0.9885 2.3236 3.0446 23 7 0.0248 1.5913 2.5473 24 14 1.4228 2.1905 4.8565 25 1 0.5388 3.0867 5.6444 26 1 1.2358 0.7885 5.3087 27 1 2.8387 2.5906 5.0568 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 6.1125 1.3633 0.5158 34 1 7.2452 2.7363 0.5147 35 1 6.9844 2.8086 -1.9005 36 1 7.5550 1.3258 -1.4096 37 1 3.8854 6.1418 -0.0033 38 1 1.7546 5.1522 -1.9318 39 1 -0.6893 5.3954 -1.9404 40 1 -2.0285 4.6352 -0.0236 41 1 -0.4644 0.9798 3.1196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162540802.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:49 Heat of formation + Delta-G solvation = -31.808821 kcal Electronic energy + Delta-G solvation = -30635.033350 eV Core-core repulsion = 26431.051455 eV Total energy + Delta-G solvation = -4203.981895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -47.22454 -41.78204 -39.11405 -37.62927 -35.69305 -34.51204 -34.05737 -32.77096 -30.90895 -30.01783 -29.41602 -28.38561 -25.69924 -24.89578 -23.15815 -22.43473 -21.52223 -21.38525 -19.76323 -19.17198 -17.89564 -17.53751 -16.34951 -15.99973 -15.71130 -15.53140 -15.38023 -15.03463 -14.59960 -14.54643 -14.32340 -14.00730 -13.86324 -13.48499 -13.06697 -13.00997 -12.69069 -12.59734 -12.20115 -11.97131 -11.74407 -11.67061 -11.60947 -11.36789 -11.09624 -10.96960 -10.91213 -10.70032 -10.47324 -10.10720 -9.94487 -9.63721 -9.58272 -9.28277 -9.08016 -8.37076 -8.06537 -7.78217 -7.51147 -7.16721 -4.73685 1.72352 2.29594 2.50504 2.92592 2.96916 3.01007 3.31136 3.38006 3.65569 3.71848 3.80648 4.20699 4.82239 5.00928 5.16856 5.35251 5.48568 5.62110 5.71780 5.76728 5.80122 5.82492 5.97313 6.00610 6.08013 6.23735 6.26189 6.42644 6.59893 6.60325 6.65532 6.71889 6.90672 7.09803 7.15437 7.17885 7.35261 7.39007 7.41604 7.48771 7.72619 7.78759 7.96355 8.10770 8.36153 8.41134 8.53010 8.66494 9.71773 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010968 B = 0.006515 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.297860 B = 4296.479798 C = 4834.965351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.082 3.918 3 O -0.305 6.305 4 C 0.549 3.451 5 O -0.517 6.517 6 C -0.033 4.033 7 C 0.071 3.929 8 C 0.146 3.854 9 N -0.838 5.838 10 N -0.505 5.505 11 C 0.205 3.795 12 N -0.331 5.331 13 C -0.036 4.036 14 C -0.064 4.064 15 C -0.224 4.224 16 C -0.115 4.115 17 C 0.039 3.961 18 F -0.137 7.137 19 C 0.115 3.885 20 C -0.426 4.426 21 H 0.083 0.917 22 C 0.085 3.915 23 N -0.724 5.724 24 Si 0.903 3.097 25 H -0.263 1.263 26 H -0.273 1.273 27 H -0.260 1.260 28 H 0.055 0.945 29 H 0.120 0.880 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.035 0.965 35 H 0.338 0.662 36 H 0.339 0.661 37 H 0.206 0.794 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.801 0.509 -2.461 3.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.008 3.992 3 O -0.219 6.219 4 C 0.395 3.605 5 O -0.408 6.408 6 C -0.149 4.149 7 C -0.064 4.064 8 C 0.015 3.985 9 N -0.367 5.367 10 N -0.225 5.225 11 C -0.076 4.076 12 N -0.004 5.004 13 C -0.127 4.127 14 C -0.083 4.083 15 C -0.244 4.244 16 C -0.135 4.135 17 C 0.018 3.982 18 F -0.115 7.115 19 C 0.111 3.889 20 C -0.452 4.452 21 H 0.101 0.899 22 C -0.141 4.141 23 N -0.344 5.344 24 Si 0.726 3.274 25 H -0.188 1.188 26 H -0.198 1.198 27 H -0.183 1.183 28 H 0.074 0.926 29 H 0.138 0.862 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.053 0.947 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.222 0.778 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.565 0.114 -2.412 2.878 hybrid contribution 0.070 -0.274 1.149 1.183 sum 1.635 -0.160 -1.264 2.073 Atomic orbital electron populations 1.22101 0.92757 1.01237 1.06508 1.22705 0.95809 0.80587 1.00103 1.86923 1.21697 1.30700 1.82619 1.19449 0.81486 0.87242 0.72352 1.90785 1.60899 1.40897 1.48211 1.19939 0.91550 0.85113 1.18328 1.20555 0.91462 0.90965 1.03453 1.20028 0.91993 0.96380 0.90061 1.58576 1.45433 1.19126 1.13615 1.69999 1.22815 1.07554 1.22133 1.24999 0.83261 0.95682 1.03683 1.42219 1.05891 1.04985 1.47345 1.16969 0.78787 1.19166 0.97780 1.20401 0.94499 0.98377 0.95070 1.19873 0.92485 1.12469 0.99548 1.20666 0.98651 1.00565 0.93614 1.17364 0.88791 1.05250 0.86808 1.91367 1.76149 1.88211 1.55800 1.17089 0.89780 0.91252 0.90814 1.19363 0.99306 1.20245 1.06295 0.89909 1.25811 0.93607 0.93590 1.01097 1.69577 1.14603 1.12570 1.37651 0.86323 0.80605 0.78650 0.81785 1.18767 1.19848 1.18339 0.92607 0.86186 0.93020 0.93440 0.92569 0.88513 0.94664 0.84995 0.84800 0.77785 0.88232 0.87707 0.87737 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 10.29 37.16 0.38 -2.68 16 2 C 0.08 1.62 6.20 37.16 0.23 1.85 16 3 O -0.31 -6.88 6.90 -41.00 -0.28 -7.16 16 4 C 0.55 12.50 7.45 34.06 0.25 12.75 16 5 O -0.52 -11.89 14.61 -19.36 -0.28 -12.17 16 6 C -0.03 -0.73 5.95 -82.08 -0.49 -1.22 16 7 C 0.07 1.43 6.66 -82.47 -0.55 0.88 16 8 C 0.15 2.52 6.78 -4.97 -0.03 2.48 16 9 N -0.84 -12.66 9.61 -11.41 -0.11 -12.77 16 10 N -0.51 -9.70 11.20 -10.54 -0.12 -9.82 16 11 C 0.21 3.79 12.41 -90.26 -1.12 2.67 16 12 N -0.33 -6.91 2.26 -58.21 -0.13 -7.04 16 13 C -0.04 -0.77 4.93 -83.11 -0.41 -1.18 16 14 C -0.06 -1.26 9.87 -39.46 -0.39 -1.65 16 15 C -0.22 -4.25 10.03 -39.37 -0.40 -4.65 16 16 C -0.12 -2.34 10.00 -39.57 -0.40 -2.74 16 17 C 0.04 0.88 6.79 -38.69 -0.26 0.62 16 18 F -0.14 -3.21 13.53 2.25 0.03 -3.18 16 19 C 0.12 2.68 4.40 -106.60 -0.47 2.21 16 20 C -0.43 -10.13 6.59 -37.88 -0.25 -10.38 16 21 H 0.08 2.07 7.38 -52.49 -0.39 1.68 16 22 C 0.08 1.91 4.29 -17.32 -0.07 1.83 16 23 N -0.72 -15.87 7.85 55.55 0.44 -15.43 16 24 Si 0.90 17.77 29.65 -169.99 -5.04 12.73 16 25 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 26 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 27 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.12 2.43 4.89 -51.93 -0.25 2.17 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.10 1.79 6.48 -51.93 -0.34 1.45 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.34 4.79 8.98 -39.29 -0.35 4.44 16 36 H 0.34 4.13 9.08 -39.29 -0.36 3.77 16 37 H 0.21 3.00 8.06 -52.49 -0.42 2.57 16 38 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 39 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 41 H 0.29 5.82 8.30 -40.82 -0.34 5.48 16 LS Contribution 347.60 15.07 5.24 5.24 Total: -1.00 -26.50 347.60 -8.86 -35.36 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -4.63 Total: 13.44 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -3.97 Total: 0.81 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.08 Total: -45.07 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.57 Total: -19.34 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.03 Total: -3.18 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.04 Total: 12.73 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -26.50 -8.86 -35.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162540802.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.552 kcal (2) G-P(sol) polarization free energy of solvation -26.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds