Wall clock time and date at job start Tue Mar 31 2020 17:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47200 * 2 1 4 4 C 1.52993 * 109.47066 * 60.00094 * 3 2 1 5 5 O 1.42902 * 109.47292 * 64.47844 * 4 3 2 6 6 C 1.52998 * 109.47209 * 300.00168 * 3 2 1 7 7 O 1.42904 * 109.47266 * 302.92033 * 6 3 2 8 8 N 1.46501 * 109.46852 * 180.02562 * 3 2 1 9 9 C 1.38735 * 119.99790 * 183.75889 * 8 3 2 10 10 C 1.38753 * 120.29114 * 355.45617 * 9 8 3 11 11 C 1.38169 * 120.02491 * 179.97438 * 10 9 8 12 12 C 1.50699 * 119.68664 * 179.97438 * 11 10 9 13 13 F 1.39899 * 109.46891 * 90.00334 * 12 11 10 14 14 F 1.39901 * 109.46989 * 209.99557 * 12 11 10 15 15 F 1.39892 * 109.47337 * 330.00103 * 12 11 10 16 16 C 1.38905 * 120.62449 * 0.02562 * 11 10 9 17 17 C 1.36452 * 120.59753 * 359.68659 * 16 11 10 18 18 C 1.40731 * 119.94992 * 0.56821 * 17 16 11 19 19 C 1.41041 * 120.30577 * 179.73681 * 18 17 16 20 20 H 1.08007 * 119.99599 * 206.54862 * 19 18 17 21 21 C 1.39922 * 120.00254 * 26.54871 * 19 18 17 22 22 N 1.30879 * 119.99868 * 20.02160 * 21 19 18 23 23 Si 1.86802 * 120.00145 * 200.02730 * 21 19 18 24 24 H 1.48497 * 109.46842 * 265.01080 * 23 21 19 25 25 H 1.48493 * 109.47049 * 25.01044 * 23 21 19 26 26 H 1.48498 * 109.47144 * 145.01327 * 23 21 19 27 27 H 1.09003 * 109.47352 * 59.99698 * 1 2 3 28 28 H 1.09001 * 109.47575 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47014 * 300.00041 * 1 2 3 30 30 H 1.09003 * 109.46510 * 239.99824 * 2 1 3 31 31 H 1.09000 * 109.46933 * 120.00593 * 2 1 3 32 32 H 1.08997 * 109.47422 * 184.47326 * 4 3 2 33 33 H 1.09003 * 109.47358 * 304.48137 * 4 3 2 34 34 H 0.96699 * 114.00154 * 180.02562 * 5 4 3 35 35 H 1.08998 * 109.47114 * 62.91554 * 6 3 2 36 36 H 1.08994 * 109.47634 * 182.91963 * 6 3 2 37 37 H 0.96695 * 113.99920 * 180.02562 * 7 6 3 38 38 H 0.96993 * 120.00199 * 3.75105 * 8 3 2 39 39 H 1.08002 * 119.98904 * 359.95795 * 10 9 8 40 40 H 1.07996 * 119.69791 * 179.97438 * 16 11 10 41 41 H 1.07992 * 120.02449 * 180.30261 * 17 16 11 42 42 H 0.96998 * 119.99922 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 8 2.0903 1.5535 2.4136 6 6 1.5300 2.1638 -1.2492 7 8 1.9494 1.4517 -2.4150 8 7 3.5050 1.4424 -0.0006 9 6 4.1987 2.6413 0.0780 10 6 3.5144 3.8482 0.0627 11 6 4.2108 5.0389 0.1418 12 6 3.4598 6.3453 0.1239 13 9 3.1366 6.7153 1.4338 14 9 4.2602 7.3353 -0.4562 15 9 2.2858 6.1982 -0.6223 16 6 5.5966 5.0432 0.2367 17 6 6.2948 3.8710 0.2598 18 6 5.6108 2.6440 0.1752 19 6 6.3254 1.4282 0.1928 20 1 5.9105 0.5511 -0.2817 21 6 7.5717 1.3582 0.8250 22 7 7.9050 2.2573 1.7158 23 14 8.7600 -0.0183 0.3974 24 1 8.6007 -1.1294 1.3696 25 1 8.4712 -0.5138 -0.9723 26 1 10.1526 0.4942 0.4552 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.8264 3.2119 1.2101 33 1 0.4430 2.0947 1.2903 34 1 1.8095 1.9604 3.2447 35 1 0.4413 2.2093 -1.2234 36 1 1.9354 3.1752 -1.2758 37 1 1.6612 1.8533 -3.2461 38 1 3.9899 0.6042 -0.0559 39 1 2.4369 3.8569 -0.0115 40 1 6.1258 5.9826 0.2974 41 1 7.3717 3.8850 0.3387 42 1 8.7691 2.2090 2.1537 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167972533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:47 Heat of formation + Delta-G solvation = -216.700712 kcal Electronic energy + Delta-G solvation = -30889.086578 eV Core-core repulsion = 26226.397983 eV Total energy + Delta-G solvation = -4662.688595 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -49.33762 -46.88958 -46.80130 -39.53595 -37.34912 -36.06074 -34.43806 -33.91474 -32.69392 -30.50015 -28.52522 -27.88466 -26.69990 -25.05409 -23.81646 -23.49057 -21.17005 -20.28422 -18.92812 -17.73616 -17.64886 -17.52237 -17.34272 -17.03329 -16.96781 -15.89216 -15.26018 -14.82050 -14.67102 -14.37474 -13.90449 -13.89568 -13.74008 -13.63127 -13.32590 -13.08097 -13.03805 -12.95730 -12.87003 -12.66111 -12.40453 -12.24911 -11.97926 -11.89479 -11.65666 -11.45851 -11.32815 -11.15798 -10.98180 -10.58427 -10.53164 -10.24116 -10.04172 -9.75749 -9.61952 -9.27643 -9.11664 -8.98319 -7.62515 -6.94361 -6.37974 -4.31716 2.45635 3.00812 3.02785 3.08556 3.10104 3.62393 3.85386 4.03291 4.36141 4.45813 4.95464 4.99002 5.02404 5.09757 5.13441 5.24550 5.43758 5.44211 5.53734 5.62821 5.67098 5.68313 5.80649 5.82940 6.02512 6.13415 6.29238 6.37071 6.41728 6.52774 6.82024 6.93851 7.08336 7.26297 7.37105 7.62594 7.84928 7.86907 7.97691 8.00450 8.28109 8.54793 8.67826 8.84913 9.00362 10.05601 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.008150 B = 0.006537 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3434.757944 B = 4282.475590 C = 6622.923385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.198 3.802 4 C 0.052 3.948 5 O -0.550 6.550 6 C 0.051 3.949 7 O -0.556 6.556 8 N -0.717 5.717 9 C 0.135 3.865 10 C -0.154 4.154 11 C -0.281 4.281 12 C 0.514 3.486 13 F -0.196 7.196 14 F -0.193 7.193 15 F -0.197 7.197 16 C -0.085 4.085 17 C -0.156 4.156 18 C 0.096 3.904 19 C -0.447 4.447 20 H 0.079 0.921 21 C 0.078 3.922 22 N -0.779 5.779 23 Si 0.905 3.095 24 H -0.270 1.270 25 H -0.259 1.259 26 H -0.274 1.274 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.371 0.629 35 H 0.042 0.958 36 H 0.068 0.932 37 H 0.372 0.628 38 H 0.398 0.602 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.118 0.882 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.401 -0.486 -2.292 10.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.109 3.891 4 C -0.027 4.027 5 O -0.353 6.353 6 C -0.028 4.028 7 O -0.360 6.360 8 N -0.349 5.349 9 C 0.034 3.966 10 C -0.178 4.178 11 C -0.284 4.284 12 C 0.460 3.540 13 F -0.178 7.178 14 F -0.174 7.174 15 F -0.179 7.179 16 C -0.105 4.105 17 C -0.177 4.177 18 C 0.091 3.909 19 C -0.476 4.476 20 H 0.097 0.903 21 C -0.141 4.141 22 N -0.402 5.402 23 Si 0.729 3.271 24 H -0.195 1.195 25 H -0.183 1.183 26 H -0.199 1.199 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.217 0.783 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.217 0.783 38 H 0.234 0.766 39 H 0.128 0.872 40 H 0.112 0.888 41 H 0.136 0.864 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.827 -1.137 -2.108 10.114 hybrid contribution 0.043 0.270 -0.005 0.273 sum -9.784 -0.867 -2.113 10.047 Atomic orbital electron populations 1.21835 0.95723 1.01539 1.01507 1.21521 0.95607 0.95373 1.02939 1.19912 0.83372 0.95359 0.90499 1.22843 0.95380 0.97844 0.86615 1.86537 1.73521 1.59984 1.15283 1.22908 0.96786 0.96613 0.86462 1.86486 1.80078 1.53995 1.15415 1.43678 1.01596 1.06212 1.83410 1.17597 0.90916 0.84809 1.03257 1.19978 0.97298 0.90654 1.09855 1.18728 0.94215 0.89178 1.26291 1.18666 0.76559 0.86197 0.72576 1.93135 1.93267 1.93107 1.38273 1.93088 1.73936 1.65599 1.84812 1.93061 1.51359 1.96006 1.77481 1.19946 0.91605 0.97818 1.01114 1.20566 0.99258 0.90405 1.07461 1.17380 0.88622 0.93925 0.90932 1.19313 1.01406 0.96630 1.30230 0.90318 1.25873 0.98450 0.97054 0.92772 1.69852 1.21266 1.32649 1.16480 0.86335 0.79418 0.80990 0.80309 1.19539 1.18305 1.19933 0.92675 0.92769 0.92689 0.90863 0.90932 0.91713 0.93919 0.78313 0.93955 0.91402 0.78273 0.76568 0.87218 0.88842 0.86382 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.21 37.16 0.34 -1.37 16 2 C -0.12 -1.69 4.82 -26.73 -0.13 -1.82 16 3 C 0.20 3.22 0.40 -131.82 -0.05 3.17 16 4 C 0.05 0.81 5.30 37.15 0.20 1.01 16 5 O -0.55 -9.06 12.95 -35.23 -0.46 -9.52 16 6 C 0.05 0.77 5.24 37.16 0.19 0.96 16 7 O -0.56 -8.24 12.78 -35.23 -0.45 -8.69 16 8 N -0.72 -14.35 4.84 -45.57 -0.22 -14.57 16 9 C 0.13 3.05 6.27 -83.29 -0.52 2.53 16 10 C -0.15 -3.31 6.21 -39.42 -0.24 -3.55 16 11 C -0.28 -6.20 5.47 -104.40 -0.57 -6.77 16 12 C 0.51 10.22 3.36 36.01 0.12 10.34 16 13 F -0.20 -3.87 17.30 2.25 0.04 -3.83 16 14 F -0.19 -3.77 16.43 2.25 0.04 -3.73 16 15 F -0.20 -3.68 16.43 2.25 0.04 -3.64 16 16 C -0.08 -1.97 9.31 -39.98 -0.37 -2.34 16 17 C -0.16 -3.89 8.63 -39.28 -0.34 -4.23 16 18 C 0.10 2.41 5.55 -106.63 -0.59 1.82 16 19 C -0.45 -11.06 8.48 -37.89 -0.32 -11.38 16 20 H 0.08 1.87 6.71 -52.48 -0.35 1.52 16 21 C 0.08 1.87 5.07 -17.33 -0.09 1.78 16 22 N -0.78 -19.26 11.24 55.55 0.62 -18.64 16 23 Si 0.91 17.93 29.60 -169.99 -5.03 12.89 16 24 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 26 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 27 H 0.05 0.60 6.50 -51.93 -0.34 0.26 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.60 6.33 -51.93 -0.33 0.28 16 30 H 0.07 1.11 7.61 -51.93 -0.40 0.71 16 31 H 0.07 1.12 7.81 -51.93 -0.41 0.72 16 32 H 0.07 1.11 4.66 -51.93 -0.24 0.87 16 33 H 0.04 0.54 6.20 -51.93 -0.32 0.22 16 34 H 0.37 4.52 9.12 45.56 0.42 4.94 16 35 H 0.04 0.52 6.59 -51.93 -0.34 0.18 16 36 H 0.07 1.13 4.78 -51.93 -0.25 0.88 16 37 H 0.37 3.85 9.12 45.56 0.42 4.27 16 38 H 0.40 8.26 6.71 -40.82 -0.27 7.99 16 39 H 0.11 2.12 2.81 -52.49 -0.15 1.97 16 40 H 0.09 2.02 7.57 -52.49 -0.40 1.62 16 41 H 0.12 3.02 6.40 -52.49 -0.34 2.69 16 42 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 LS Contribution 341.59 15.07 5.15 5.15 Total: -1.00 -28.21 341.59 -5.51 -33.72 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -2.85 Total: 20.70 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -2.38 Total: -9.86 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.40 Total: -33.20 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.91 Total: -18.21 kcal Atomic # 9 Polarization: -11.31 SS G_CDS: 0.11 Total: -11.19 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.21 -5.51 -33.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167972533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.981 kcal (2) G-P(sol) polarization free energy of solvation -28.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds