Wall clock time and date at job start Tue Mar 31 2020 17:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47200 * 2 1 4 4 C 1.52993 * 109.47066 * 60.00094 * 3 2 1 5 5 O 1.42902 * 109.47292 * 64.47844 * 4 3 2 6 6 C 1.52998 * 109.47209 * 300.00168 * 3 2 1 7 7 O 1.42904 * 109.47266 * 302.92033 * 6 3 2 8 8 N 1.46501 * 109.46852 * 180.02562 * 3 2 1 9 9 C 1.38735 * 119.99790 * 183.75889 * 8 3 2 10 10 C 1.38753 * 120.29114 * 355.45617 * 9 8 3 11 11 C 1.38169 * 120.02491 * 179.97438 * 10 9 8 12 12 C 1.50699 * 119.68664 * 179.97438 * 11 10 9 13 13 F 1.39899 * 109.46891 * 90.00334 * 12 11 10 14 14 F 1.39901 * 109.46989 * 209.99557 * 12 11 10 15 15 F 1.39892 * 109.47337 * 330.00103 * 12 11 10 16 16 C 1.38905 * 120.62449 * 0.02562 * 11 10 9 17 17 C 1.36452 * 120.59753 * 359.68659 * 16 11 10 18 18 C 1.40731 * 119.94992 * 0.56821 * 17 16 11 19 19 C 1.41041 * 120.30577 * 179.73681 * 18 17 16 20 20 H 1.08007 * 119.99599 * 206.54862 * 19 18 17 21 21 C 1.39922 * 120.00254 * 26.54871 * 19 18 17 22 22 N 1.30879 * 119.99868 * 20.02160 * 21 19 18 23 23 Si 1.86802 * 120.00145 * 200.02730 * 21 19 18 24 24 H 1.48497 * 109.46842 * 265.01080 * 23 21 19 25 25 H 1.48493 * 109.47049 * 25.01044 * 23 21 19 26 26 H 1.48498 * 109.47144 * 145.01327 * 23 21 19 27 27 H 1.09003 * 109.47352 * 59.99698 * 1 2 3 28 28 H 1.09001 * 109.47575 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47014 * 300.00041 * 1 2 3 30 30 H 1.09003 * 109.46510 * 239.99824 * 2 1 3 31 31 H 1.09000 * 109.46933 * 120.00593 * 2 1 3 32 32 H 1.08997 * 109.47422 * 184.47326 * 4 3 2 33 33 H 1.09003 * 109.47358 * 304.48137 * 4 3 2 34 34 H 0.96699 * 114.00154 * 180.02562 * 5 4 3 35 35 H 1.08998 * 109.47114 * 62.91554 * 6 3 2 36 36 H 1.08994 * 109.47634 * 182.91963 * 6 3 2 37 37 H 0.96695 * 113.99920 * 180.02562 * 7 6 3 38 38 H 0.96993 * 120.00199 * 3.75105 * 8 3 2 39 39 H 1.08002 * 119.98904 * 359.95795 * 10 9 8 40 40 H 1.07996 * 119.69791 * 179.97438 * 16 11 10 41 41 H 1.07992 * 120.02449 * 180.30261 * 17 16 11 42 42 H 0.96998 * 119.99922 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 8 2.0903 1.5535 2.4136 6 6 1.5300 2.1638 -1.2492 7 8 1.9494 1.4517 -2.4150 8 7 3.5050 1.4424 -0.0006 9 6 4.1987 2.6413 0.0780 10 6 3.5144 3.8482 0.0627 11 6 4.2108 5.0389 0.1418 12 6 3.4598 6.3453 0.1239 13 9 3.1366 6.7153 1.4338 14 9 4.2602 7.3353 -0.4562 15 9 2.2858 6.1982 -0.6223 16 6 5.5966 5.0432 0.2367 17 6 6.2948 3.8710 0.2598 18 6 5.6108 2.6440 0.1752 19 6 6.3254 1.4282 0.1928 20 1 5.9105 0.5511 -0.2817 21 6 7.5717 1.3582 0.8250 22 7 7.9050 2.2573 1.7158 23 14 8.7600 -0.0183 0.3974 24 1 8.6007 -1.1294 1.3696 25 1 8.4712 -0.5138 -0.9723 26 1 10.1526 0.4942 0.4552 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.8264 3.2119 1.2101 33 1 0.4430 2.0947 1.2903 34 1 1.8095 1.9604 3.2447 35 1 0.4413 2.2093 -1.2234 36 1 1.9354 3.1752 -1.2758 37 1 1.6612 1.8533 -3.2461 38 1 3.9899 0.6042 -0.0559 39 1 2.4369 3.8569 -0.0115 40 1 6.1258 5.9826 0.2974 41 1 7.3717 3.8850 0.3387 42 1 8.7691 2.2090 2.1537 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167972533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:40 Heat of formation + Delta-G solvation = -237.257969 kcal Electronic energy + Delta-G solvation = -30889.978007 eV Core-core repulsion = 26226.397983 eV Total energy + Delta-G solvation = -4663.580025 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 5.87 seconds Orbital eigenvalues (eV) -50.93147 -48.45951 -48.39909 -40.96242 -38.92970 -37.24972 -35.76079 -35.70089 -34.07938 -32.20584 -29.97409 -29.37937 -28.43517 -26.24267 -25.37263 -24.83046 -22.90069 -21.95383 -20.25406 -19.33578 -19.24539 -19.19675 -18.94341 -18.30962 -18.15439 -17.40827 -16.88885 -16.34405 -15.92813 -15.85242 -15.48527 -15.31742 -15.18453 -15.13233 -14.89628 -14.64441 -14.61366 -14.52375 -14.13743 -13.98425 -13.94930 -13.76542 -13.57720 -13.08757 -13.01159 -12.92407 -12.79034 -12.71479 -12.52572 -12.17997 -11.71418 -11.68915 -11.56693 -11.31493 -11.05459 -10.89828 -10.50759 -10.46592 -9.45065 -8.72249 -8.07741 -6.15608 0.68053 1.27342 1.38688 1.43837 1.53188 1.98974 2.19544 2.62458 2.77671 3.09527 3.27260 3.41685 3.51219 3.82335 3.86196 3.99824 4.06586 4.21309 4.37571 4.38544 4.47128 4.54752 4.55385 4.66493 4.68341 4.73024 4.96835 5.13475 5.14676 5.18239 5.30123 5.32651 5.41243 5.54077 5.57618 5.82891 6.02677 6.18705 6.47549 6.76219 6.87082 6.91532 6.97987 7.17131 7.28053 8.30550 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.008150 B = 0.006537 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3434.757944 B = 4282.475590 C = 6622.923385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C 0.185 3.815 4 C 0.054 3.946 5 O -0.573 6.573 6 C 0.056 3.944 7 O -0.573 6.573 8 N -0.718 5.718 9 C 0.135 3.865 10 C -0.155 4.155 11 C -0.281 4.281 12 C 0.523 3.477 13 F -0.192 7.192 14 F -0.189 7.189 15 F -0.186 7.186 16 C -0.099 4.099 17 C -0.175 4.175 18 C 0.063 3.937 19 C -0.474 4.474 20 H 0.078 0.922 21 C 0.040 3.960 22 N -0.814 5.814 23 Si 0.974 3.026 24 H -0.265 1.265 25 H -0.259 1.259 26 H -0.268 1.268 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.388 0.612 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.391 0.609 38 H 0.390 0.610 39 H 0.136 0.864 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.531 -0.856 -2.738 12.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.148 4.148 3 C 0.097 3.903 4 C -0.025 4.025 5 O -0.380 6.380 6 C -0.023 4.023 7 O -0.380 6.380 8 N -0.348 5.348 9 C 0.033 3.967 10 C -0.179 4.179 11 C -0.284 4.284 12 C 0.469 3.531 13 F -0.174 7.174 14 F -0.171 7.171 15 F -0.167 7.167 16 C -0.119 4.119 17 C -0.196 4.196 18 C 0.058 3.942 19 C -0.503 4.503 20 H 0.096 0.904 21 C -0.176 4.176 22 N -0.439 5.439 23 Si 0.796 3.204 24 H -0.190 1.190 25 H -0.183 1.183 26 H -0.193 1.193 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.236 0.764 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.239 0.761 38 H 0.225 0.775 39 H 0.153 0.847 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.006 -1.494 -2.559 12.366 hybrid contribution 0.580 0.427 0.124 0.731 sum -11.426 -1.067 -2.435 11.731 Atomic orbital electron populations 1.21808 0.92943 1.02837 1.02404 1.21456 0.97873 0.93778 1.01650 1.20328 0.81068 0.97047 0.91848 1.22851 0.97355 0.96349 0.85924 1.86500 1.74320 1.60638 1.16516 1.22806 0.98595 0.95008 0.85842 1.86449 1.80642 1.54462 1.16453 1.43867 1.03386 1.04899 1.82655 1.17746 0.90468 0.86298 1.02199 1.20259 0.98614 0.89931 1.09131 1.19033 0.94066 0.90704 1.24572 1.18266 0.76715 0.85289 0.72834 1.93142 1.93209 1.92964 1.38087 1.93099 1.73963 1.65246 1.84752 1.93083 1.50515 1.95933 1.77173 1.20068 0.92440 0.97678 1.01676 1.20515 0.98680 0.91378 1.09036 1.17717 0.90128 0.94154 0.92155 1.19488 1.02678 0.96715 1.31397 0.90412 1.26638 0.99555 0.99287 0.92153 1.69903 1.22001 1.34493 1.17488 0.85301 0.77273 0.78026 0.79834 1.18999 1.18290 1.19253 0.91575 0.91455 0.91806 0.91901 0.92494 0.93472 0.90225 0.76367 0.90410 0.93322 0.76055 0.77523 0.84715 0.87855 0.88107 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.21 71.98 0.66 -2.12 16 2 C -0.11 -2.99 4.82 30.59 0.15 -2.84 16 3 C 0.18 5.71 0.40 3.60 0.00 5.71 16 4 C 0.05 1.55 5.30 71.98 0.38 1.93 16 5 O -0.57 -18.19 12.95 -148.98 -1.93 -20.12 16 6 C 0.06 1.53 5.24 71.98 0.38 1.91 16 7 O -0.57 -15.84 12.78 -148.98 -1.90 -17.74 16 8 N -0.72 -28.79 4.84 -298.09 -1.44 -30.23 16 9 C 0.13 6.19 6.27 38.99 0.24 6.44 16 10 C -0.16 -6.58 6.21 22.38 0.14 -6.44 16 11 C -0.28 -12.25 5.47 -19.72 -0.11 -12.35 16 12 C 0.52 19.95 3.36 71.24 0.24 20.19 16 13 F -0.19 -7.24 17.30 44.97 0.78 -6.46 16 14 F -0.19 -7.10 16.43 44.97 0.74 -6.36 16 15 F -0.19 -6.45 16.43 44.97 0.74 -5.72 16 16 C -0.10 -4.66 9.31 22.01 0.21 -4.45 16 17 C -0.18 -9.09 8.63 22.46 0.19 -8.89 16 18 C 0.06 3.28 5.55 -21.17 -0.12 3.17 16 19 C -0.47 -24.30 8.48 23.37 0.20 -24.10 16 20 H 0.08 3.85 6.71 -2.91 -0.02 3.83 16 21 C 0.04 1.97 5.07 85.24 0.43 2.40 16 22 N -0.81 -41.70 11.24 21.83 0.25 -41.45 16 23 Si 0.97 37.53 29.60 68.60 2.03 39.56 16 24 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 25 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 26 H -0.27 -9.93 7.11 99.48 0.71 -9.23 16 27 H 0.07 1.16 6.50 -2.39 -0.02 1.14 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.14 6.33 -2.39 -0.02 1.13 16 30 H 0.06 1.83 7.61 -2.39 -0.02 1.81 16 31 H 0.06 1.71 7.81 -2.39 -0.02 1.70 16 32 H 0.05 1.52 4.66 -2.39 -0.01 1.51 16 33 H 0.08 1.71 6.20 -2.39 -0.01 1.69 16 34 H 0.39 8.90 9.12 -74.06 -0.68 8.23 16 35 H 0.08 1.58 6.59 -2.39 -0.02 1.57 16 36 H 0.05 1.51 4.78 -2.39 -0.01 1.50 16 37 H 0.39 7.19 9.12 -74.06 -0.68 6.51 16 38 H 0.39 16.58 6.71 -92.71 -0.62 15.95 16 39 H 0.14 4.98 2.81 -2.91 -0.01 4.97 16 40 H 0.10 4.53 7.57 -2.91 -0.02 4.51 16 41 H 0.10 5.46 6.40 -2.91 -0.02 5.44 16 42 H 0.29 13.44 8.30 -92.71 -0.77 12.67 16 Total: -1.00 -61.69 341.59 1.42 -60.27 By element: Atomic # 1 Polarization: 48.54 SS G_CDS: -0.83 Total: 47.71 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 3.00 Total: -19.45 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -1.20 Total: -71.69 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -3.83 Total: -37.86 kcal Atomic # 9 Polarization: -20.79 SS G_CDS: 2.26 Total: -18.54 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Total: -61.69 1.42 -60.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167972533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.989 kcal (2) G-P(sol) polarization free energy of solvation -61.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.87 seconds