Wall clock time and date at job start Tue Mar 31 2020 19:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47154 * 2 1 4 4 C 1.35352 * 116.99909 * 184.94777 * 3 2 1 5 5 C 1.39003 * 126.40427 * 270.98856 * 4 3 2 6 6 C 1.46904 * 126.49921 * 359.96804 * 5 4 3 7 7 O 1.21673 * 120.00132 * 359.70709 * 6 5 4 8 8 N 1.34780 * 119.99901 * 179.71208 * 6 5 4 9 9 C 1.39953 * 119.99906 * 175.20037 * 8 6 5 10 10 C 1.39381 * 119.91376 * 215.67343 * 9 8 6 11 11 C 1.38374 * 120.46901 * 179.72449 * 10 9 8 12 12 C 1.38006 * 120.28565 * 0.25329 * 11 10 9 13 13 F 1.35102 * 120.09037 * 179.97438 * 12 11 10 14 14 C 1.41004 * 119.81920 * 0.02562 * 12 11 10 15 15 C 1.41296 * 120.23167 * 180.02562 * 14 12 11 16 16 H 1.08003 * 119.99595 * 29.54063 * 15 14 12 17 17 C 1.39921 * 120.00084 * 209.53249 * 15 14 12 18 18 N 1.30851 * 119.99988 * 10.11977 * 17 15 14 19 19 Si 1.86797 * 119.99801 * 190.12196 * 17 15 14 20 20 H 1.48497 * 109.47346 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47551 * 120.00354 * 19 17 15 22 22 H 1.48503 * 109.46875 * 240.00227 * 19 17 15 23 23 C 1.38155 * 119.91148 * 35.91182 * 9 8 6 24 24 C 1.41467 * 107.00620 * 179.70417 * 5 4 3 25 25 N 1.30323 * 108.13454 * 0.26387 * 24 5 4 26 26 N 1.34664 * 126.40809 * 91.14290 * 4 3 2 27 27 C 1.46504 * 125.74217 * 0.02624 * 26 4 3 28 28 H 1.09005 * 109.47339 * 299.99706 * 1 2 3 29 29 H 1.09003 * 109.47699 * 59.99906 * 1 2 3 30 30 H 1.09005 * 109.47342 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46965 * 239.99696 * 2 1 3 32 32 H 1.08997 * 109.47036 * 119.99907 * 2 1 3 33 33 H 0.97003 * 120.00253 * 355.20463 * 8 6 5 34 34 H 1.07996 * 119.76775 * 0.02562 * 10 9 8 35 35 H 1.07996 * 119.85196 * 180.23200 * 11 10 9 36 36 H 0.96996 * 119.99581 * 179.97438 * 18 17 15 37 37 H 1.07999 * 120.14820 * 359.97438 * 23 9 8 38 38 H 1.07999 * 125.93457 * 180.24407 * 24 5 4 39 39 H 1.08994 * 109.46948 * 275.35132 * 27 26 4 40 40 H 1.09001 * 109.46666 * 35.35429 * 27 26 4 41 41 H 1.08996 * 109.46908 * 155.35027 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3439 1.5261 -0.1040 5 6 4.2526 1.5838 0.9463 6 6 3.9430 1.4630 2.3772 7 8 2.7929 1.2998 2.7392 8 7 4.9330 1.5331 3.2891 9 6 4.6285 1.5190 4.6551 10 6 5.3861 2.2796 5.5440 11 6 5.0916 2.2787 6.8960 12 6 4.0459 1.5192 7.3800 13 9 3.7620 1.5208 8.7008 14 6 3.2751 0.7406 6.4922 15 6 2.2022 -0.0398 6.9782 16 1 1.6599 0.2756 7.8574 17 6 1.8422 -1.2211 6.3204 18 7 2.6127 -1.7082 5.3817 19 14 0.2615 -2.1028 6.7823 20 1 -0.4251 -1.3534 7.8650 21 1 -0.6264 -2.1822 5.5946 22 1 0.5796 -3.4742 7.2550 23 6 3.5808 0.7474 5.1194 24 6 5.5330 1.7747 0.3756 25 7 5.3955 1.8324 -0.9190 26 7 4.0429 1.6842 -1.2441 27 6 3.4821 1.6931 -2.5975 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.8566 1.5933 2.9988 34 1 6.2058 2.8777 5.1743 35 1 5.6828 2.8747 7.5754 36 1 2.3633 -2.5273 4.9260 37 1 2.9962 0.1556 4.4307 38 1 6.4628 1.8584 0.9186 39 1 3.3856 0.6688 -2.9575 40 1 2.5003 2.1664 -2.5808 41 1 4.1430 2.2507 -3.2610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194373888.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:54 Heat of formation + Delta-G solvation = -14.358149 kcal Electronic energy + Delta-G solvation = -28481.767144 eV Core-core repulsion = 24278.541967 eV Total energy + Delta-G solvation = -4203.225177 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -47.13836 -41.58761 -39.18104 -38.30247 -36.84727 -34.23070 -33.57935 -33.02221 -31.82169 -29.72784 -29.56878 -28.08718 -26.83354 -25.34066 -23.47241 -22.84424 -21.64102 -21.28378 -20.51830 -19.55855 -18.44986 -17.54846 -16.68896 -16.23044 -16.06880 -15.95395 -15.62964 -15.00315 -14.77166 -14.59430 -14.49788 -14.02882 -13.98915 -13.88165 -13.49049 -13.00671 -12.88742 -12.81333 -12.66883 -12.45558 -12.21461 -11.79636 -11.75483 -11.62048 -11.55644 -11.18402 -11.13667 -10.92316 -10.43729 -10.25526 -10.12853 -9.69319 -9.55484 -9.36790 -9.15420 -8.77230 -8.64655 -7.46352 -6.84546 -6.66831 -4.37807 1.19647 1.99657 2.10558 2.65152 2.85174 3.10552 3.15464 3.17631 3.38696 3.77556 3.91652 3.97555 4.32583 4.62180 4.79752 4.83610 4.85560 5.02306 5.07426 5.12291 5.24637 5.27192 5.50718 5.52469 5.69618 5.85631 5.94334 6.00000 6.12582 6.15249 6.28807 6.43710 6.82621 6.96389 7.02317 7.21949 7.29123 7.39519 7.49562 7.61802 7.74826 8.05731 8.16886 8.35310 8.54636 8.82219 8.87948 8.95221 10.22123 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.004176 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.665834 B = 6703.642520 C = 8678.273659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.067 3.933 3 O -0.297 6.297 4 C 0.322 3.678 5 C -0.289 4.289 6 C 0.583 3.417 7 O -0.509 6.509 8 N -0.662 5.662 9 C 0.135 3.865 10 C -0.235 4.235 11 C -0.112 4.112 12 C -0.037 4.037 13 F -0.164 7.164 14 C 0.093 3.907 15 C -0.450 4.450 16 H 0.082 0.918 17 C 0.075 3.925 18 N -0.792 5.792 19 Si 0.914 3.086 20 H -0.259 1.259 21 H -0.272 1.272 22 H -0.274 1.274 23 C -0.128 4.128 24 C 0.090 3.910 25 N -0.283 5.283 26 N -0.373 5.373 27 C 0.096 3.904 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.396 0.604 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.279 0.721 37 H 0.153 0.847 38 H 0.195 0.805 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.663 1.870 -16.299 16.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.007 4.007 3 O -0.207 6.207 4 C 0.149 3.851 5 C -0.305 4.305 6 C 0.370 3.630 7 O -0.384 6.384 8 N -0.305 5.305 9 C 0.043 3.957 10 C -0.257 4.257 11 C -0.132 4.132 12 C -0.058 4.058 13 F -0.143 7.143 14 C 0.089 3.911 15 C -0.479 4.479 16 H 0.100 0.900 17 C -0.143 4.143 18 N -0.417 5.417 19 Si 0.738 3.262 20 H -0.183 1.183 21 H -0.197 1.197 22 H -0.199 1.199 23 C -0.149 4.149 24 C -0.097 4.097 25 N -0.106 5.106 26 N -0.162 5.162 27 C -0.045 4.045 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.230 0.770 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.090 0.910 37 H 0.170 0.830 38 H 0.212 0.788 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.113 1.816 -17.391 17.521 hybrid contribution -0.391 -0.601 0.826 1.094 sum 0.722 1.214 -16.566 16.626 Atomic orbital electron populations 1.21753 0.92274 1.02940 1.03605 1.22882 0.96120 0.80244 1.01480 1.85977 1.13822 1.28869 1.92005 1.19210 0.83673 0.96582 0.85629 1.20193 0.93004 1.23204 0.94051 1.16962 0.85294 0.77190 0.83508 1.90862 1.19872 1.47281 1.80421 1.43053 1.08957 1.73574 1.04953 1.17584 0.99084 0.98378 0.80690 1.19888 1.05697 1.07536 0.92554 1.20237 0.97552 1.00249 0.95130 1.17949 1.01066 1.09602 0.77143 1.91264 1.93740 1.96251 1.33080 1.17548 0.91976 0.90782 0.90757 1.19509 1.12667 1.04627 1.11092 0.89951 1.25866 0.97602 0.97244 0.93544 1.69789 1.34713 1.18357 1.18838 0.86167 0.81417 0.79083 0.79539 1.18305 1.19668 1.19936 1.21465 0.98889 0.99560 0.94999 1.23925 0.97883 0.96792 0.91094 1.77173 0.91937 1.25656 1.15804 1.48892 1.05336 1.55726 1.06286 1.21945 0.99810 1.03647 0.79124 0.90627 0.92038 0.90231 0.93310 0.90745 0.76964 0.88194 0.87802 0.90973 0.82983 0.78826 0.90563 0.89145 0.88565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 37.16 0.38 -1.25 16 2 C 0.07 0.88 6.77 37.16 0.25 1.13 16 3 O -0.30 -4.57 9.47 -25.00 -0.24 -4.80 16 4 C 0.32 4.89 6.99 -16.03 -0.11 4.78 16 5 C -0.29 -4.65 6.15 -104.88 -0.64 -5.30 16 6 C 0.58 11.56 7.63 -12.75 -0.10 11.47 16 7 O -0.51 -12.20 13.85 -2.04 -0.03 -12.23 16 8 N -0.66 -12.41 5.32 -11.01 -0.06 -12.47 16 9 C 0.14 3.10 6.28 -83.75 -0.53 2.58 16 10 C -0.24 -5.04 9.97 -39.11 -0.39 -5.43 16 11 C -0.11 -2.55 10.00 -39.62 -0.40 -2.95 16 12 C -0.04 -0.97 7.31 -38.62 -0.28 -1.25 16 13 F -0.16 -4.25 16.76 2.25 0.04 -4.21 16 14 C 0.09 2.60 5.55 -106.78 -0.59 2.00 16 15 C -0.45 -12.53 8.75 -37.79 -0.33 -12.86 16 16 H 0.08 2.26 7.78 -52.48 -0.41 1.86 16 17 C 0.07 1.95 5.26 -17.34 -0.09 1.86 16 18 N -0.79 -20.90 10.86 55.55 0.60 -20.30 16 19 Si 0.91 19.44 29.57 -169.99 -5.03 14.42 16 20 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 C -0.13 -3.41 7.28 -38.70 -0.28 -3.69 16 24 C 0.09 1.15 11.50 -16.96 -0.20 0.95 16 25 N -0.28 -3.69 12.48 30.88 0.39 -3.31 16 26 N -0.37 -4.66 3.99 -67.67 -0.27 -4.93 16 27 C 0.10 0.73 11.38 59.85 0.68 1.41 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.40 5.67 7.78 -40.82 -0.32 5.36 16 34 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 35 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 37 H 0.15 4.32 4.46 -52.49 -0.23 4.08 16 38 H 0.20 1.72 7.51 -52.49 -0.39 1.32 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -33.85 361.79 -6.48 -40.34 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -4.72 Total: 8.59 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -2.62 Total: -6.55 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.66 Total: -41.00 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.27 Total: -17.03 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.04 Total: -4.21 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.85 -6.48 -40.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194373888.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.978 kcal (2) G-P(sol) polarization free energy of solvation -33.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds