Wall clock time and date at job start Tue Mar 31 2020 19:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47154 * 2 1 4 4 C 1.35352 * 116.99909 * 184.94777 * 3 2 1 5 5 C 1.39003 * 126.40427 * 270.98856 * 4 3 2 6 6 C 1.46904 * 126.49921 * 359.96804 * 5 4 3 7 7 O 1.21673 * 120.00132 * 359.70709 * 6 5 4 8 8 N 1.34780 * 119.99901 * 179.71208 * 6 5 4 9 9 C 1.39953 * 119.99906 * 175.20037 * 8 6 5 10 10 C 1.39381 * 119.91376 * 215.67343 * 9 8 6 11 11 C 1.38374 * 120.46901 * 179.72449 * 10 9 8 12 12 C 1.38006 * 120.28565 * 0.25329 * 11 10 9 13 13 F 1.35102 * 120.09037 * 179.97438 * 12 11 10 14 14 C 1.41004 * 119.81920 * 0.02562 * 12 11 10 15 15 C 1.41296 * 120.23167 * 180.02562 * 14 12 11 16 16 H 1.08003 * 119.99595 * 29.54063 * 15 14 12 17 17 C 1.39921 * 120.00084 * 209.53249 * 15 14 12 18 18 N 1.30851 * 119.99988 * 10.11977 * 17 15 14 19 19 Si 1.86797 * 119.99801 * 190.12196 * 17 15 14 20 20 H 1.48497 * 109.47346 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47551 * 120.00354 * 19 17 15 22 22 H 1.48503 * 109.46875 * 240.00227 * 19 17 15 23 23 C 1.38155 * 119.91148 * 35.91182 * 9 8 6 24 24 C 1.41467 * 107.00620 * 179.70417 * 5 4 3 25 25 N 1.30323 * 108.13454 * 0.26387 * 24 5 4 26 26 N 1.34664 * 126.40809 * 91.14290 * 4 3 2 27 27 C 1.46504 * 125.74217 * 0.02624 * 26 4 3 28 28 H 1.09005 * 109.47339 * 299.99706 * 1 2 3 29 29 H 1.09003 * 109.47699 * 59.99906 * 1 2 3 30 30 H 1.09005 * 109.47342 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46965 * 239.99696 * 2 1 3 32 32 H 1.08997 * 109.47036 * 119.99907 * 2 1 3 33 33 H 0.97003 * 120.00253 * 355.20463 * 8 6 5 34 34 H 1.07996 * 119.76775 * 0.02562 * 10 9 8 35 35 H 1.07996 * 119.85196 * 180.23200 * 11 10 9 36 36 H 0.96996 * 119.99581 * 179.97438 * 18 17 15 37 37 H 1.07999 * 120.14820 * 359.97438 * 23 9 8 38 38 H 1.07999 * 125.93457 * 180.24407 * 24 5 4 39 39 H 1.08994 * 109.46948 * 275.35132 * 27 26 4 40 40 H 1.09001 * 109.46666 * 35.35429 * 27 26 4 41 41 H 1.08996 * 109.46908 * 155.35027 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3439 1.5261 -0.1040 5 6 4.2526 1.5838 0.9463 6 6 3.9430 1.4630 2.3772 7 8 2.7929 1.2998 2.7392 8 7 4.9330 1.5331 3.2891 9 6 4.6285 1.5190 4.6551 10 6 5.3861 2.2796 5.5440 11 6 5.0916 2.2787 6.8960 12 6 4.0459 1.5192 7.3800 13 9 3.7620 1.5208 8.7008 14 6 3.2751 0.7406 6.4922 15 6 2.2022 -0.0398 6.9782 16 1 1.6599 0.2756 7.8574 17 6 1.8422 -1.2211 6.3204 18 7 2.6127 -1.7082 5.3817 19 14 0.2615 -2.1028 6.7823 20 1 -0.4251 -1.3534 7.8650 21 1 -0.6264 -2.1822 5.5946 22 1 0.5796 -3.4742 7.2550 23 6 3.5808 0.7474 5.1194 24 6 5.5330 1.7747 0.3756 25 7 5.3955 1.8324 -0.9190 26 7 4.0429 1.6842 -1.2441 27 6 3.4821 1.6931 -2.5975 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.8566 1.5933 2.9988 34 1 6.2058 2.8777 5.1743 35 1 5.6828 2.8747 7.5754 36 1 2.3633 -2.5273 4.9260 37 1 2.9962 0.1556 4.4307 38 1 6.4628 1.8584 0.9186 39 1 3.3856 0.6688 -2.9575 40 1 2.5003 2.1664 -2.5808 41 1 4.1430 2.2507 -3.2610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194373888.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:53 Heat of formation + Delta-G solvation = -37.332550 kcal Electronic energy + Delta-G solvation = -28482.763389 eV Core-core repulsion = 24278.541967 eV Total energy + Delta-G solvation = -4204.221421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.14741 -42.66980 -40.80416 -39.39680 -38.65033 -36.04934 -34.99198 -34.33916 -32.81490 -31.65204 -30.85986 -29.53388 -27.89685 -27.27992 -24.60642 -24.11504 -23.37231 -22.62118 -21.87634 -21.08433 -19.86347 -19.14101 -18.02542 -17.92202 -17.64267 -17.31079 -16.96105 -16.67811 -16.28506 -16.00491 -15.87367 -15.55597 -15.45656 -15.25345 -14.75773 -14.65439 -14.32118 -13.75525 -13.62980 -13.60934 -13.57186 -13.54260 -13.43048 -13.20299 -12.85889 -12.78202 -12.60937 -12.28406 -12.24288 -12.07177 -11.56474 -11.27037 -11.20345 -10.84830 -10.53341 -10.49986 -9.81618 -9.40693 -8.72149 -8.54906 -6.42937 0.04498 0.69982 0.94544 1.04979 1.12653 1.33147 1.44325 1.49081 2.18978 2.22092 2.37315 2.55034 2.72902 3.37033 3.55230 3.84157 3.89532 4.02399 4.04856 4.08255 4.26514 4.30214 4.33664 4.37139 4.56616 4.60606 4.63489 4.69112 4.89261 5.02565 5.06430 5.09647 5.16228 5.19198 5.27210 5.35334 5.66943 5.79815 5.85161 6.11083 6.22950 6.25395 6.37493 6.55646 6.74058 6.83948 6.91406 7.43171 8.31590 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.004176 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.665834 B = 6703.642520 C = 8678.273659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 O -0.314 6.314 4 C 0.315 3.685 5 C -0.320 4.320 6 C 0.581 3.419 7 O -0.561 6.561 8 N -0.649 5.649 9 C 0.138 3.862 10 C -0.215 4.215 11 C -0.107 4.107 12 C -0.069 4.069 13 F -0.171 7.171 14 C 0.060 3.940 15 C -0.496 4.496 16 H 0.068 0.932 17 C 0.035 3.965 18 N -0.820 5.820 19 Si 0.982 3.018 20 H -0.261 1.261 21 H -0.262 1.262 22 H -0.258 1.258 23 C -0.156 4.156 24 C 0.104 3.896 25 N -0.286 5.286 26 N -0.363 5.363 27 C 0.083 3.917 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.420 0.580 34 H 0.151 0.849 35 H 0.140 0.860 36 H 0.286 0.714 37 H 0.129 0.871 38 H 0.232 0.768 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.181 2.423 -18.738 19.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.008 4.008 3 O -0.223 6.223 4 C 0.140 3.860 5 C -0.335 4.335 6 C 0.371 3.629 7 O -0.439 6.439 8 N -0.295 5.295 9 C 0.044 3.956 10 C -0.236 4.236 11 C -0.127 4.127 12 C -0.090 4.090 13 F -0.150 7.150 14 C 0.057 3.943 15 C -0.525 4.525 16 H 0.087 0.913 17 C -0.180 4.180 18 N -0.446 5.446 19 Si 0.803 3.197 20 H -0.185 1.185 21 H -0.187 1.187 22 H -0.182 1.182 23 C -0.177 4.177 24 C -0.082 4.082 25 N -0.109 5.109 26 N -0.152 5.152 27 C -0.056 4.056 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.259 0.741 34 H 0.168 0.832 35 H 0.158 0.842 36 H 0.097 0.903 37 H 0.146 0.854 38 H 0.248 0.752 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.697 2.385 -19.885 20.209 hybrid contribution -0.753 -0.664 1.432 1.749 sum 1.944 1.721 -18.454 18.635 Atomic orbital electron populations 1.21772 0.90803 1.04185 1.03317 1.22980 0.97299 0.79370 1.01108 1.85943 1.14187 1.30010 1.92207 1.19368 0.83629 0.96384 0.86631 1.19990 0.95184 1.26276 0.92096 1.17517 0.84594 0.75779 0.85054 1.90844 1.22051 1.49552 1.81485 1.42908 1.10272 1.73067 1.03221 1.17742 0.97854 0.97064 0.82919 1.20410 1.05615 1.05893 0.91641 1.20665 0.96313 0.99255 0.96424 1.18316 1.02581 1.11103 0.76954 1.91228 1.93987 1.96415 1.33379 1.17900 0.92831 0.91802 0.91808 1.19659 1.14379 1.06496 1.11993 0.91334 1.26690 1.00714 0.97355 0.93223 1.69843 1.36233 1.18926 1.19613 0.85159 0.77055 0.78207 0.79322 1.18497 1.18697 1.18250 1.21351 1.00742 1.01272 0.94357 1.24411 0.97796 0.95199 0.90842 1.77173 0.92217 1.25700 1.15800 1.49223 1.04894 1.53975 1.07067 1.22393 1.00646 1.05553 0.76990 0.93476 0.89634 0.88229 0.90119 0.94540 0.74131 0.83170 0.84197 0.90311 0.85351 0.75212 0.88462 0.88095 0.86638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 10.28 71.98 0.74 -2.38 16 2 C 0.07 1.76 6.77 71.98 0.49 2.25 16 3 O -0.31 -9.67 9.47 -79.49 -0.75 -10.43 16 4 C 0.32 9.31 6.99 84.44 0.59 9.90 16 5 C -0.32 -10.05 6.15 -20.03 -0.12 -10.17 16 6 C 0.58 23.33 7.63 86.51 0.66 23.99 16 7 O -0.56 -28.32 13.85 2.67 0.04 -28.28 16 8 N -0.65 -23.72 5.32 -306.97 -1.63 -25.36 16 9 C 0.14 6.30 6.28 38.10 0.24 6.54 16 10 C -0.21 -8.63 9.97 22.58 0.23 -8.41 16 11 C -0.11 -4.71 10.00 22.25 0.22 -4.49 16 12 C -0.07 -3.69 7.31 22.89 0.17 -3.53 16 13 F -0.17 -9.13 16.76 44.97 0.75 -8.37 16 14 C 0.06 3.52 5.55 -21.26 -0.12 3.40 16 15 C -0.50 -29.42 8.75 23.43 0.20 -29.22 16 16 H 0.07 4.06 7.78 -2.91 -0.02 4.03 16 17 C 0.03 1.89 5.26 85.25 0.45 2.34 16 18 N -0.82 -45.54 10.86 21.82 0.24 -45.30 16 19 Si 0.98 41.52 29.57 68.60 2.03 43.55 16 20 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 22 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 23 C -0.16 -8.66 7.28 22.84 0.17 -8.50 16 24 C 0.10 2.38 11.50 85.71 0.99 3.37 16 25 N -0.29 -6.65 12.48 -56.22 -0.70 -7.35 16 26 N -0.36 -8.22 3.99 -479.79 -1.91 -10.13 16 27 C 0.08 1.02 11.38 127.77 1.45 2.47 16 28 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.42 10.89 7.78 -92.71 -0.72 10.17 16 34 H 0.15 4.55 8.06 -2.91 -0.02 4.52 16 35 H 0.14 5.08 8.06 -2.91 -0.02 5.06 16 36 H 0.29 14.36 8.30 -92.71 -0.77 13.59 16 37 H 0.13 7.77 4.46 -2.91 -0.01 7.75 16 38 H 0.23 3.15 7.51 -2.91 -0.02 3.13 16 39 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -80.27 361.79 4.77 -75.50 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.37 Total: 28.63 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 6.35 Total: -12.44 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -4.01 Total: -88.15 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -0.72 Total: -38.71 kcal Atomic # 9 Polarization: -9.13 SS G_CDS: 0.75 Total: -8.37 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -80.27 4.77 -75.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194373888.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.164 kcal (2) G-P(sol) polarization free energy of solvation -80.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds