Wall clock time and date at job start Tue Mar 31 2020 18:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99877 * 2 1 4 4 O 1.42900 * 109.47380 * 134.99917 * 3 2 1 5 5 C 1.35825 * 116.99959 * 180.02562 * 4 3 2 6 6 C 1.38924 * 119.92433 * 359.97438 * 5 4 3 7 7 C 1.37826 * 120.12773 * 180.02562 * 6 5 4 8 8 C 1.39428 * 119.95335 * 359.97438 * 7 6 5 9 9 C 1.48279 * 120.07274 * 179.97438 * 8 7 6 10 10 N 1.30831 * 126.42827 * 0.03067 * 9 8 7 11 11 O 1.21290 * 110.08690 * 180.02562 * 10 9 8 12 12 C 1.33672 * 110.04023 * 359.97438 * 11 10 9 13 13 C 1.50698 * 126.42986 * 180.02562 * 12 11 10 14 14 N 1.46905 * 109.47245 * 269.97370 * 13 12 11 15 15 C 1.46894 * 110.99923 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47223 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99889 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00526 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99873 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00468 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46730 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47011 * 119.99847 * 20 18 16 23 23 H 1.48501 * 109.47248 * 240.00207 * 20 18 16 24 24 N 1.30971 * 107.14093 * 359.73289 * 12 11 10 25 25 C 1.39609 * 119.84079 * 0.02562 * 8 7 6 26 26 F 1.35103 * 120.05720 * 180.02562 * 25 8 7 27 27 C 1.38146 * 119.88399 * 0.02562 * 25 8 7 28 28 H 1.07994 * 120.00275 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.99536 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.99925 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.46890 * 14.99414 * 3 2 1 32 32 H 1.09006 * 109.46847 * 254.99623 * 3 2 1 33 33 H 1.08007 * 119.93245 * 0.04225 * 6 5 4 34 34 H 1.07993 * 120.02191 * 180.02562 * 7 6 5 35 35 H 1.08996 * 109.47069 * 29.97560 * 13 12 11 36 36 H 1.09001 * 109.46870 * 149.97708 * 13 12 11 37 37 H 1.00899 * 110.99261 * 56.05078 * 14 13 12 38 38 H 1.09001 * 109.47373 * 300.00646 * 15 14 13 39 39 H 1.09001 * 109.46944 * 60.00553 * 15 14 13 40 40 H 0.96996 * 120.00024 * 180.02562 * 19 18 16 41 41 H 1.08007 * 119.98529 * 180.26700 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9086 2.3449 1.0788 6 6 3.6556 3.4664 0.2990 7 6 4.4466 4.5882 0.4232 8 6 5.5026 4.5980 1.3336 9 6 6.3556 5.8033 1.4690 10 7 6.2317 6.9218 0.8017 11 8 7.0867 7.7097 1.1470 12 6 7.8597 7.1627 2.0904 13 6 9.0309 7.8162 2.7776 14 7 10.2596 7.5377 2.0222 15 6 11.4247 8.1610 2.6638 16 6 12.6634 7.8548 1.8621 17 1 12.5922 7.2572 0.9653 18 6 13.8877 8.3374 2.2733 19 7 13.9745 9.0656 3.3651 20 14 15.4231 7.9584 1.2791 21 1 15.0588 7.1274 0.1034 22 1 16.0394 9.2280 0.8168 23 1 16.3917 7.2179 2.1270 24 7 7.4042 5.9546 2.3100 25 6 5.7554 3.4701 2.1165 26 9 6.7771 3.4751 3.0004 27 6 4.9589 2.3489 1.9858 28 1 -0.5400 0.9352 -0.0004 29 1 -0.5399 -0.9354 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3854 2.1161 0.2659 32 1 2.4756 1.4867 -0.9927 33 1 2.8372 3.4592 -0.4059 34 1 4.2481 5.4592 -0.1836 35 1 8.8697 8.8931 2.8250 36 1 9.1275 7.4184 3.7879 37 1 10.1707 7.8393 1.0635 38 1 11.2799 9.2404 2.7101 39 1 11.5381 7.7660 3.6734 40 1 14.8357 9.4054 3.6542 41 1 5.1504 1.4770 2.5937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211454426.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:14 Heat of formation + Delta-G solvation = 41.048299 kcal Electronic energy + Delta-G solvation = -26368.588237 eV Core-core repulsion = 22167.765664 eV Total energy + Delta-G solvation = -4200.822573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.97970 -45.37072 -40.62742 -38.08459 -36.09683 -35.45003 -34.60145 -33.07017 -32.03937 -31.18414 -30.10947 -27.92101 -27.24250 -25.10827 -24.52060 -23.56687 -22.42784 -21.66708 -21.01292 -20.53836 -18.96148 -17.95640 -17.84783 -17.10569 -16.66916 -16.47429 -16.34496 -16.09923 -15.70137 -15.43353 -15.20996 -14.59043 -14.32403 -14.23576 -13.98903 -13.66571 -13.47908 -13.05952 -12.94889 -12.83632 -12.55504 -12.20416 -12.18302 -11.91408 -11.62273 -11.42842 -11.41889 -11.25237 -10.87047 -10.79605 -10.74817 -10.25194 -10.11026 -9.91260 -9.29017 -9.28803 -8.55508 -8.50208 -7.58307 -6.09390 -4.11611 0.40437 0.75903 1.38769 1.43975 2.39754 2.66432 2.94376 3.28063 3.29623 3.37197 3.42392 3.45380 3.86468 4.02209 4.18044 4.35019 4.39152 4.40150 4.52876 4.63077 4.78087 4.85737 4.90191 5.05854 5.18003 5.23699 5.27712 5.41928 5.55317 5.59039 5.67122 5.77067 5.85440 5.91592 5.94571 5.96543 6.09516 6.26257 6.79760 7.01325 7.23949 7.65035 7.99152 8.13414 8.24358 8.40225 8.96225 9.53609 11.01669 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024321 B = 0.001850 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.984031 B =15129.211033 C =15568.356612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.159 4.159 3 C 0.084 3.916 4 O -0.304 6.304 5 C 0.177 3.823 6 C -0.225 4.225 7 C -0.014 4.014 8 C -0.090 4.090 9 C 0.208 3.792 10 N -0.383 5.383 11 O 0.076 5.924 12 C 0.209 3.791 13 C 0.147 3.853 14 N -0.680 5.680 15 C 0.195 3.805 16 C -0.517 4.517 17 H 0.064 0.936 18 C 0.058 3.942 19 N -0.896 5.896 20 Si 0.901 3.099 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.283 1.283 24 N -0.457 5.457 25 C 0.189 3.811 26 F -0.103 7.103 27 C -0.196 4.196 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.122 0.878 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.063 0.937 36 H 0.114 0.886 37 H 0.336 0.664 38 H -0.005 1.005 39 H 0.036 0.964 40 H 0.262 0.738 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.849 -13.375 -5.907 31.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C 0.009 3.991 4 O -0.217 6.217 5 C 0.129 3.871 6 C -0.244 4.244 7 C -0.034 4.034 8 C -0.093 4.093 9 C -0.062 4.062 10 N -0.091 5.091 11 O 0.017 5.983 12 C -0.012 4.012 13 C 0.016 3.984 14 N -0.313 5.313 15 C 0.069 3.931 16 C -0.555 4.555 17 H 0.083 0.917 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.729 3.271 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.209 1.209 24 N -0.190 5.190 25 C 0.167 3.833 26 F -0.081 7.081 27 C -0.215 4.215 28 H 0.119 0.881 29 H 0.127 0.873 30 H 0.140 0.860 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.158 0.842 34 H 0.162 0.838 35 H 0.081 0.919 36 H 0.132 0.868 37 H 0.152 0.848 38 H 0.013 0.987 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -28.181 -14.315 -5.743 32.126 hybrid contribution 0.984 0.997 -0.655 1.546 sum -27.197 -13.319 -6.398 30.952 Atomic orbital electron populations 1.23922 0.95395 1.02754 0.98427 1.22650 0.95667 0.97692 1.01641 1.21950 0.87640 0.97272 0.92205 1.86090 1.41954 1.35127 1.58491 1.18683 0.89674 0.85751 0.92942 1.21162 1.04602 0.93777 1.04843 1.20815 0.90657 0.97968 0.93914 1.17281 0.98892 0.90235 1.02935 1.23547 0.95025 0.94171 0.93447 1.74819 1.10694 1.01945 1.21645 1.85256 1.31292 1.37864 1.43931 1.29136 0.95282 0.88398 0.88385 1.20530 0.83527 0.97007 0.97358 1.60779 1.00840 1.64178 1.05533 1.19655 0.85611 0.92056 0.95737 1.21153 0.91359 1.32625 1.10392 0.91738 1.24965 0.99195 0.94991 0.95249 1.69959 1.25214 1.35274 1.23068 0.86393 0.82636 0.78009 0.80095 1.19640 1.21030 1.20918 1.72195 1.09063 1.14896 1.22808 1.17157 0.85617 0.92498 0.88035 1.91662 1.55298 1.96489 1.64680 1.20173 0.97425 0.99753 1.04166 0.88132 0.87279 0.86050 0.90964 0.90459 0.84155 0.83816 0.91935 0.86796 0.84766 0.98713 0.94621 0.92822 0.83014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.62 14.31 29.01 0.42 -0.21 16 2 C -0.16 -0.77 9.89 -36.03 -0.36 -1.13 16 3 C 0.08 0.46 5.15 36.01 0.19 0.64 16 4 O -0.30 -2.57 10.11 -19.19 -0.19 -2.76 16 5 C 0.18 1.65 6.69 -39.13 -0.26 1.39 16 6 C -0.23 -1.88 9.02 -39.48 -0.36 -2.23 16 7 C -0.01 -0.14 9.68 -39.29 -0.38 -0.52 16 8 C -0.09 -1.23 5.88 -104.81 -0.62 -1.85 16 9 C 0.21 3.38 7.78 -156.08 -1.21 2.17 16 10 N -0.38 -6.13 11.86 30.98 0.37 -5.77 16 11 O 0.08 1.22 11.29 18.03 0.20 1.42 16 12 C 0.21 3.49 8.01 -12.98 -0.10 3.38 16 13 C 0.15 2.44 6.31 -4.97 -0.03 2.41 16 14 N -0.68 -14.01 6.48 -116.34 -0.75 -14.76 16 15 C 0.20 4.84 5.44 -4.98 -0.03 4.81 16 16 C -0.52 -14.27 9.32 -34.44 -0.32 -14.59 16 17 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -26.03 13.29 55.43 0.74 -25.30 16 20 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 N -0.46 -8.16 10.24 -9.87 -0.10 -8.26 16 25 C 0.19 2.50 7.27 -39.10 -0.28 2.21 16 26 F -0.10 -1.61 15.80 2.25 0.04 -1.57 16 27 C -0.20 -2.08 9.95 -39.42 -0.39 -2.48 16 28 H 0.10 0.29 7.90 -52.49 -0.41 -0.13 16 29 H 0.11 0.29 8.06 -52.49 -0.42 -0.14 16 30 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 31 H 0.07 0.31 7.37 -51.93 -0.38 -0.08 16 32 H 0.08 0.33 7.65 -51.93 -0.40 -0.06 16 33 H 0.14 0.75 6.28 -52.48 -0.33 0.42 16 34 H 0.14 1.35 7.86 -52.49 -0.41 0.93 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 37 H 0.34 6.61 8.71 -39.29 -0.34 6.27 16 38 H 0.00 -0.13 8.14 -51.93 -0.42 -0.55 16 39 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.15 1.39 8.06 -52.48 -0.42 0.96 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -31.82 368.73 -7.80 -39.62 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -4.78 Total: -0.10 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -3.84 Total: -4.47 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.25 Total: -54.09 kcal Atomic # 8 Polarization: -1.35 SS G_CDS: 0.01 Total: -1.34 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.82 -7.80 -39.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211454426.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.666 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds