Wall clock time and date at job start Tue Mar 31 2020 18:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99877 * 2 1 4 4 O 1.42900 * 109.47380 * 134.99917 * 3 2 1 5 5 C 1.35825 * 116.99959 * 180.02562 * 4 3 2 6 6 C 1.38924 * 119.92433 * 359.97438 * 5 4 3 7 7 C 1.37826 * 120.12773 * 180.02562 * 6 5 4 8 8 C 1.39428 * 119.95335 * 359.97438 * 7 6 5 9 9 C 1.48279 * 120.07274 * 179.97438 * 8 7 6 10 10 N 1.30831 * 126.42827 * 0.03067 * 9 8 7 11 11 O 1.21290 * 110.08690 * 180.02562 * 10 9 8 12 12 C 1.33672 * 110.04023 * 359.97438 * 11 10 9 13 13 C 1.50698 * 126.42986 * 180.02562 * 12 11 10 14 14 N 1.46905 * 109.47245 * 269.97370 * 13 12 11 15 15 C 1.46894 * 110.99923 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47223 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99889 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00526 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99873 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00468 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46730 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47011 * 119.99847 * 20 18 16 23 23 H 1.48501 * 109.47248 * 240.00207 * 20 18 16 24 24 N 1.30971 * 107.14093 * 359.73289 * 12 11 10 25 25 C 1.39609 * 119.84079 * 0.02562 * 8 7 6 26 26 F 1.35103 * 120.05720 * 180.02562 * 25 8 7 27 27 C 1.38146 * 119.88399 * 0.02562 * 25 8 7 28 28 H 1.07994 * 120.00275 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.99536 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.99925 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.46890 * 14.99414 * 3 2 1 32 32 H 1.09006 * 109.46847 * 254.99623 * 3 2 1 33 33 H 1.08007 * 119.93245 * 0.04225 * 6 5 4 34 34 H 1.07993 * 120.02191 * 180.02562 * 7 6 5 35 35 H 1.08996 * 109.47069 * 29.97560 * 13 12 11 36 36 H 1.09001 * 109.46870 * 149.97708 * 13 12 11 37 37 H 1.00899 * 110.99261 * 56.05078 * 14 13 12 38 38 H 1.09001 * 109.47373 * 300.00646 * 15 14 13 39 39 H 1.09001 * 109.46944 * 60.00553 * 15 14 13 40 40 H 0.96996 * 120.00024 * 180.02562 * 19 18 16 41 41 H 1.08007 * 119.98529 * 180.26700 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9086 2.3449 1.0788 6 6 3.6556 3.4664 0.2990 7 6 4.4466 4.5882 0.4232 8 6 5.5026 4.5980 1.3336 9 6 6.3556 5.8033 1.4690 10 7 6.2317 6.9218 0.8017 11 8 7.0867 7.7097 1.1470 12 6 7.8597 7.1627 2.0904 13 6 9.0309 7.8162 2.7776 14 7 10.2596 7.5377 2.0222 15 6 11.4247 8.1610 2.6638 16 6 12.6634 7.8548 1.8621 17 1 12.5922 7.2572 0.9653 18 6 13.8877 8.3374 2.2733 19 7 13.9745 9.0656 3.3651 20 14 15.4231 7.9584 1.2791 21 1 15.0588 7.1274 0.1034 22 1 16.0394 9.2280 0.8168 23 1 16.3917 7.2179 2.1270 24 7 7.4042 5.9546 2.3100 25 6 5.7554 3.4701 2.1165 26 9 6.7771 3.4751 3.0004 27 6 4.9589 2.3489 1.9858 28 1 -0.5400 0.9352 -0.0004 29 1 -0.5399 -0.9354 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3854 2.1161 0.2659 32 1 2.4756 1.4867 -0.9927 33 1 2.8372 3.4592 -0.4059 34 1 4.2481 5.4592 -0.1836 35 1 8.8697 8.8931 2.8250 36 1 9.1275 7.4184 3.7879 37 1 10.1707 7.8393 1.0635 38 1 11.2799 9.2404 2.7101 39 1 11.5381 7.7660 3.6734 40 1 14.8357 9.4054 3.6542 41 1 5.1504 1.4770 2.5937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211454426.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:13 Heat of formation + Delta-G solvation = 19.863211 kcal Electronic energy + Delta-G solvation = -26369.506891 eV Core-core repulsion = 22167.765664 eV Total energy + Delta-G solvation = -4201.741227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.03625 -46.63191 -41.33088 -38.85644 -37.65271 -36.72364 -35.10543 -34.79441 -33.54695 -32.04858 -31.03488 -29.65829 -27.73487 -26.83279 -25.55468 -24.63058 -23.58835 -23.32168 -22.15601 -20.90116 -19.72697 -19.22899 -19.08875 -18.51668 -17.77908 -17.34462 -17.16608 -17.05001 -16.96782 -16.64210 -16.42520 -16.11371 -15.49152 -15.19450 -15.01006 -14.86492 -14.42498 -14.17624 -13.98368 -13.82662 -13.75026 -13.44085 -13.31391 -13.13272 -13.02119 -12.68067 -12.65396 -12.52902 -12.21632 -12.14521 -12.04880 -11.86744 -11.39318 -11.21846 -10.65595 -10.44294 -10.11516 -9.37462 -9.28950 -8.21967 -6.31685 -0.57208 -0.04818 0.15408 1.09733 1.24887 1.42813 1.44338 1.56943 1.63229 2.08144 2.34223 2.40436 2.42203 2.73867 3.12664 3.14380 3.49955 3.56051 3.71474 3.82843 3.91241 3.99556 4.09614 4.15159 4.21782 4.32716 4.37825 4.53276 4.56368 4.66626 4.79279 4.89802 4.96447 5.01530 5.03209 5.05548 5.24723 5.37275 5.58892 5.63873 5.68183 5.97321 6.16492 6.29857 6.54299 6.84780 6.97433 7.38364 8.89401 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024321 B = 0.001850 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.984031 B =15129.211033 C =15568.356612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.179 4.179 3 C 0.075 3.925 4 O -0.312 6.312 5 C 0.186 3.814 6 C -0.207 4.207 7 C -0.009 4.009 8 C -0.121 4.121 9 C 0.206 3.794 10 N -0.386 5.386 11 O 0.077 5.923 12 C 0.211 3.789 13 C 0.153 3.847 14 N -0.687 5.687 15 C 0.210 3.790 16 C -0.538 4.538 17 H 0.061 0.939 18 C 0.007 3.993 19 N -0.928 5.928 20 Si 0.969 3.031 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.280 1.280 24 N -0.483 5.483 25 C 0.167 3.833 26 F -0.126 7.126 27 C -0.197 4.197 28 H 0.112 0.888 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.179 0.821 34 H 0.155 0.845 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.341 0.659 38 H -0.016 1.016 39 H 0.013 0.987 40 H 0.266 0.734 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.734 -14.237 -7.583 33.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.197 4.197 3 C 0.001 3.999 4 O -0.225 6.225 5 C 0.138 3.862 6 C -0.225 4.225 7 C -0.029 4.029 8 C -0.124 4.124 9 C -0.063 4.063 10 N -0.095 5.095 11 O 0.019 5.981 12 C -0.011 4.011 13 C 0.022 3.978 14 N -0.320 5.320 15 C 0.083 3.917 16 C -0.576 4.576 17 H 0.079 0.921 18 C -0.192 4.192 19 N -0.568 5.568 20 Si 0.794 3.206 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.205 1.205 24 N -0.216 5.216 25 C 0.145 3.855 26 F -0.104 7.104 27 C -0.216 4.216 28 H 0.130 0.870 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.196 0.804 34 H 0.173 0.827 35 H 0.107 0.893 36 H 0.133 0.867 37 H 0.158 0.842 38 H 0.001 0.999 39 H 0.032 0.968 40 H 0.075 0.925 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -30.094 -15.178 -7.434 34.515 hybrid contribution 1.341 1.132 -0.169 1.763 sum -28.753 -14.045 -7.604 32.891 Atomic orbital electron populations 1.24136 0.95072 1.03803 0.96485 1.22674 0.96137 0.97449 1.03436 1.22267 0.87177 0.98218 0.92238 1.86103 1.42454 1.34633 1.59328 1.18732 0.89023 0.86313 0.92090 1.21500 1.04483 0.92210 1.04315 1.20988 0.89754 0.99090 0.93020 1.17513 1.00287 0.89601 1.05001 1.24024 0.94708 0.94967 0.92632 1.74785 1.10850 1.01974 1.21872 1.85238 1.31301 1.37872 1.43716 1.28944 0.95299 0.88267 0.88545 1.20492 0.81931 0.98631 0.96751 1.60552 1.01397 1.64071 1.05982 1.19285 0.86642 0.91266 0.94504 1.21515 0.92801 1.32656 1.10637 0.92075 1.25825 1.02372 0.94711 0.96254 1.70060 1.26183 1.36123 1.24465 0.85341 0.78612 0.78057 0.78608 1.19147 1.20134 1.20537 1.72198 1.10113 1.15454 1.23860 1.17405 0.86041 0.93551 0.88500 1.91595 1.56520 1.96687 1.65629 1.20270 0.97492 0.99207 1.04658 0.87008 0.86377 0.86509 0.89234 0.89004 0.80409 0.82693 0.89301 0.86655 0.84156 0.99863 0.96844 0.92525 0.82101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.75 14.31 67.78 0.97 0.22 16 2 C -0.18 -1.34 9.89 25.65 0.25 -1.09 16 3 C 0.07 0.58 5.15 71.24 0.37 0.94 16 4 O -0.31 -4.52 10.11 -91.59 -0.93 -5.44 16 5 C 0.19 3.08 6.69 22.56 0.15 3.23 16 6 C -0.21 -2.82 9.02 22.34 0.20 -2.61 16 7 C -0.01 -0.17 9.68 22.46 0.22 0.05 16 8 C -0.12 -3.26 5.88 -19.99 -0.12 -3.38 16 9 C 0.21 6.76 7.78 137.22 1.07 7.82 16 10 N -0.39 -12.25 11.86 -59.01 -0.70 -12.95 16 11 O 0.08 2.45 11.29 74.59 0.84 3.29 16 12 C 0.21 7.07 8.01 88.35 0.71 7.78 16 13 C 0.15 5.09 6.31 85.56 0.54 5.63 16 14 N -0.69 -28.60 6.48 -522.00 -3.38 -31.98 16 15 C 0.21 10.62 5.44 85.56 0.47 11.09 16 16 C -0.54 -30.00 9.32 25.60 0.24 -29.76 16 17 H 0.06 3.37 7.81 -2.91 -0.02 3.35 16 18 C 0.01 0.41 5.46 84.65 0.46 0.87 16 19 N -0.93 -54.40 13.29 21.45 0.28 -54.11 16 20 Si 0.97 43.91 29.54 68.60 2.03 45.93 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 24 N -0.48 -17.59 10.24 -302.40 -3.10 -20.68 16 25 C 0.17 4.47 7.27 22.58 0.16 4.64 16 26 F -0.13 -4.10 15.80 44.97 0.71 -3.39 16 27 C -0.20 -4.06 9.95 22.38 0.22 -3.84 16 28 H 0.11 0.27 7.90 -2.91 -0.02 0.25 16 29 H 0.12 0.33 8.06 -2.91 -0.02 0.31 16 30 H 0.12 0.94 8.06 -2.91 -0.02 0.92 16 31 H 0.09 0.40 7.37 -2.39 -0.02 0.38 16 32 H 0.09 0.45 7.65 -2.38 -0.02 0.43 16 33 H 0.18 1.05 6.28 -2.91 -0.02 1.03 16 34 H 0.16 2.57 7.86 -2.91 -0.02 2.54 16 35 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 37 H 0.34 13.50 8.71 -89.69 -0.78 12.72 16 38 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 39 H 0.01 0.73 8.14 -2.39 -0.02 0.72 16 40 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 41 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -69.11 368.73 1.97 -67.15 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.30 Total: 10.63 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 5.91 Total: 1.57 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -6.89 Total: -119.73 kcal Atomic # 8 Polarization: -2.07 SS G_CDS: -0.08 Total: -2.16 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.71 Total: -3.39 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -69.11 1.97 -67.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211454426.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.009 kcal (2) G-P(sol) polarization free energy of solvation -69.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds