Wall clock time and date at job start Tue Mar 31 2020 18:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47244 * 2 1 4 4 C 1.36938 * 120.00282 * 264.29203 * 3 2 1 5 5 H 1.08000 * 120.00001 * 188.63974 * 4 3 2 6 6 C 1.38815 * 119.99804 * 8.63405 * 4 3 2 7 7 N 1.31619 * 120.00021 * 24.60510 * 6 4 3 8 8 Si 1.86799 * 119.99807 * 204.60719 * 6 4 3 9 9 H 1.48498 * 109.47172 * 85.03020 * 8 6 4 10 10 H 1.48501 * 109.47007 * 205.02664 * 8 6 4 11 11 H 1.48495 * 109.47199 * 325.02596 * 8 6 4 12 12 C 1.46505 * 120.00086 * 84.29003 * 3 2 1 13 13 C 1.53004 * 109.47053 * 270.00183 * 12 3 2 14 14 C 1.52997 * 109.46762 * 179.97438 * 13 12 3 15 15 N 1.46502 * 109.46850 * 180.02562 * 14 13 12 16 16 C 1.34770 * 120.00189 * 180.02562 * 15 14 13 17 17 O 1.21617 * 119.99945 * 359.97438 * 16 15 14 18 18 C 1.47385 * 120.00357 * 180.02562 * 16 15 14 19 19 N 1.29689 * 121.82442 * 359.96687 * 18 16 15 20 20 S 1.56015 * 111.73553 * 179.47468 * 19 18 16 21 21 C 1.76247 * 97.56346 * 0.54692 * 20 19 18 22 22 C 1.38693 * 134.18776 * 179.36633 * 21 20 19 23 23 C 1.36803 * 119.63255 * 179.97438 * 22 21 20 24 24 C 1.38902 * 120.30423 * 359.97438 * 23 22 21 25 25 C 1.36328 * 121.03845 * 0.02562 * 24 23 22 26 26 C 1.40414 * 119.95953 * 0.27095 * 25 24 23 27 27 H 1.09001 * 109.46843 * 299.99811 * 1 2 3 28 28 H 1.09001 * 109.46886 * 59.99650 * 1 2 3 29 29 H 1.09004 * 109.47229 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47570 * 240.00050 * 2 1 3 31 31 H 1.09002 * 109.47744 * 120.00025 * 2 1 3 32 32 H 0.96996 * 119.99634 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.47271 * 149.99801 * 12 3 2 34 34 H 1.09006 * 109.46926 * 30.00168 * 12 3 2 35 35 H 1.09004 * 109.46708 * 59.99915 * 13 12 3 36 36 H 1.08996 * 109.46825 * 300.00062 * 13 12 3 37 37 H 1.08997 * 109.47505 * 60.00245 * 14 13 12 38 38 H 1.09005 * 109.47592 * 299.99583 * 14 13 12 39 39 H 0.97004 * 120.00119 * 359.97438 * 15 14 13 40 40 H 1.08005 * 120.18740 * 0.02562 * 22 21 20 41 41 H 1.08001 * 119.85259 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.48515 * 180.02562 * 24 23 22 43 43 H 1.08000 * 120.02219 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3578 1.9875 -1.1800 5 1 2.8470 2.9502 -1.1713 6 6 2.0731 1.3645 -2.3874 7 7 1.0959 0.4858 -2.4602 8 14 3.0771 1.7731 -3.9087 9 1 4.3046 0.9378 -3.9309 10 1 2.2690 1.4977 -5.1238 11 1 3.4556 3.2088 -3.8810 12 6 2.1435 2.1139 1.2625 13 6 0.8338 2.8474 1.5584 14 6 0.9644 3.6121 2.8772 15 7 -0.2899 4.3139 3.1609 16 6 -0.4078 5.0582 4.2782 17 8 0.5269 5.1469 5.0512 18 6 -1.6698 5.7639 4.5640 19 7 -2.6887 5.6937 3.7647 20 16 -3.9009 6.5171 4.3002 21 6 -3.1391 7.1223 5.7698 22 6 -3.5543 7.9471 6.8047 23 6 -2.6942 8.2309 7.8300 24 6 -1.4120 7.6969 7.8374 25 6 -0.9833 6.8839 6.8306 26 6 -1.8413 6.5796 5.7615 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.8968 0.0508 -3.3040 33 1 2.9553 2.8371 1.1839 34 1 2.3579 1.4132 2.0695 35 1 0.0220 2.1241 1.6370 36 1 0.6194 3.5480 0.7514 37 1 1.7761 4.3353 2.7991 38 1 1.1785 2.9112 3.6840 39 1 -1.0353 4.2436 2.5442 40 1 -4.5513 8.3624 6.8015 41 1 -3.0139 8.8725 8.6378 42 1 -0.7441 7.9294 8.6537 43 1 0.0173 6.4780 6.8527 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265116038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:59 Heat of formation + Delta-G solvation = 44.343349 kcal Electronic energy + Delta-G solvation = -25032.431719 eV Core-core repulsion = 21397.965207 eV Total energy + Delta-G solvation = -3634.466513 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.81217 -39.18285 -37.16622 -36.54780 -34.96539 -32.10790 -31.47378 -30.96113 -30.36190 -28.94178 -26.69477 -24.89082 -23.54610 -23.24098 -22.38278 -21.09971 -20.52069 -19.94487 -18.96220 -17.64720 -16.87506 -16.66522 -15.87064 -15.68514 -15.57419 -15.06655 -14.93362 -14.80390 -14.25126 -13.96897 -13.80316 -13.38396 -13.08174 -12.68854 -12.61872 -12.49594 -12.09866 -11.84579 -11.68129 -11.53523 -11.39124 -11.27934 -11.02897 -10.86002 -10.70340 -10.39115 -10.30727 -10.17347 -10.03386 -9.76533 -9.55618 -9.44482 -9.32090 -9.01819 -8.33606 -8.21889 -6.87518 -5.74564 -3.05539 0.02158 0.72146 0.98356 1.32905 1.44564 2.93659 3.06738 3.34889 3.41081 3.48710 3.49170 3.98886 4.31829 4.52268 4.54610 4.75672 4.87800 5.04896 5.10413 5.25952 5.36450 5.49504 5.52314 5.60872 5.75151 5.79247 5.89311 5.98900 6.08536 6.10976 6.18527 6.41382 6.42673 6.53431 6.62868 6.77136 6.89658 6.95746 7.13648 7.20501 7.49472 7.69229 7.79952 8.08574 8.12065 8.39046 9.26835 9.89949 10.34882 11.29350 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.021889 B = 0.002150 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.846371 B =13018.017559 C =13372.539060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.166 3.834 3 N -0.597 5.597 4 C -0.247 4.247 5 H 0.073 0.927 6 C -0.005 4.005 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.289 1.289 10 H -0.294 1.294 11 H -0.282 1.282 12 C 0.157 3.843 13 C -0.156 4.156 14 C 0.118 3.882 15 N -0.702 5.702 16 C 0.585 3.415 17 O -0.531 6.531 18 C 0.092 3.908 19 N -0.487 5.487 20 S 0.389 5.611 21 C -0.202 4.202 22 C -0.075 4.075 23 C -0.090 4.090 24 C -0.120 4.120 25 C -0.041 4.041 26 C -0.088 4.088 27 H 0.013 0.987 28 H 0.090 0.910 29 H 0.018 0.982 30 H 0.087 0.913 31 H 0.002 0.998 32 H 0.251 0.749 33 H 0.047 0.953 34 H 0.040 0.960 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.409 0.591 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.786 14.139 20.325 27.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.041 3.959 3 N -0.318 5.318 4 C -0.376 4.376 5 H 0.091 0.909 6 C -0.201 4.201 7 N -0.543 5.543 8 Si 0.727 3.273 9 H -0.216 1.216 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.028 3.972 13 C -0.197 4.197 14 C -0.005 4.005 15 N -0.353 5.353 16 C 0.365 3.635 17 O -0.407 6.407 18 C -0.096 4.096 19 N -0.313 5.313 20 S 0.548 5.452 21 C -0.323 4.323 22 C -0.097 4.097 23 C -0.113 4.113 24 C -0.140 4.140 25 C -0.063 4.063 26 C -0.099 4.099 27 H 0.032 0.968 28 H 0.108 0.892 29 H 0.037 0.963 30 H 0.105 0.895 31 H 0.020 0.980 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.245 0.755 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.670 13.656 18.989 26.139 hybrid contribution 1.223 0.352 -0.063 1.274 sum -10.447 14.007 18.927 25.760 Atomic orbital electron populations 1.22417 0.99391 0.98140 1.01035 1.20802 0.92441 0.84500 0.98159 1.44268 1.75718 1.10225 1.01598 1.19285 1.31178 1.03591 0.83587 0.90885 1.24724 0.98014 1.00099 0.97313 1.70155 1.27325 1.31997 1.24834 0.86376 0.80346 0.77814 0.82786 1.21642 1.22036 1.20814 1.20670 0.93542 0.94161 0.88783 1.22747 1.03017 0.99783 0.94126 1.21633 0.84671 0.95459 0.98729 1.46058 1.18016 1.48229 1.23001 1.17159 0.84992 0.79195 0.82147 1.90766 1.38820 1.63261 1.47861 1.21987 0.94361 1.01145 0.92127 1.71443 1.05920 1.22641 1.31313 1.81459 1.15748 1.38784 1.09182 1.24316 0.98985 1.05125 1.03847 1.19937 1.00307 0.97167 0.92263 1.21087 0.93636 0.98707 0.97820 1.20937 0.96482 0.97616 0.98933 1.20862 0.99824 0.95102 0.90521 1.19615 0.94502 0.99628 0.96115 0.96825 0.89167 0.96327 0.89501 0.97964 0.93862 0.93475 0.94155 0.91503 0.91343 0.91353 0.91481 0.75504 0.84811 0.84768 0.84823 0.83375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.58 37.15 0.36 -3.10 16 2 C 0.17 3.99 5.64 -4.05 -0.02 3.97 16 3 N -0.60 -14.53 2.54 -173.23 -0.44 -14.96 16 4 C -0.25 -6.61 9.70 -15.06 -0.15 -6.75 16 5 H 0.07 1.93 7.93 -52.49 -0.42 1.51 16 6 C 0.00 -0.12 4.91 -17.43 -0.09 -0.21 16 7 N -0.90 -24.94 8.54 55.49 0.47 -24.46 16 8 Si 0.90 21.57 29.62 -169.99 -5.03 16.54 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.16 3.11 5.71 -4.04 -0.02 3.08 16 13 C -0.16 -2.75 5.53 -26.73 -0.15 -2.90 16 14 C 0.12 1.80 5.67 -4.04 -0.02 1.78 16 15 N -0.70 -10.33 5.55 -61.40 -0.34 -10.67 16 16 C 0.58 8.87 7.81 -12.54 -0.10 8.77 16 17 O -0.53 -8.91 15.01 5.26 0.08 -8.83 16 18 C 0.09 1.25 6.82 -81.98 -0.56 0.70 16 19 N -0.49 -6.25 10.49 28.25 0.30 -5.96 16 20 S 0.39 3.79 23.36 -107.50 -2.51 1.28 16 21 C -0.20 -2.01 6.73 -38.49 -0.26 -2.27 16 22 C -0.07 -0.55 10.03 -39.93 -0.40 -0.95 16 23 C -0.09 -0.57 10.00 -39.85 -0.40 -0.97 16 24 C -0.12 -0.91 9.93 -40.02 -0.40 -1.31 16 25 C -0.04 -0.43 9.57 -39.45 -0.38 -0.81 16 26 C -0.09 -1.06 6.10 -105.09 -0.64 -1.70 16 27 H 0.01 0.28 5.98 -51.93 -0.31 -0.03 16 28 H 0.09 2.36 6.28 -51.93 -0.33 2.03 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 2.33 5.87 -51.93 -0.31 2.02 16 31 H 0.00 0.05 7.97 -51.93 -0.41 -0.37 16 32 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 34 H 0.04 0.74 7.95 -51.93 -0.41 0.33 16 35 H 0.07 1.24 5.93 -51.93 -0.31 0.93 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.41 5.77 7.91 -40.82 -0.32 5.45 16 40 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 41 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 42 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.15 1.66 6.64 -52.49 -0.35 1.31 16 LS Contribution 365.71 15.07 5.51 5.51 Total: -1.00 -30.34 365.71 -10.86 -41.21 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.68 Total: 3.03 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -3.22 Total: -2.67 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.01 Total: -56.05 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.08 Total: -8.83 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -2.51 Total: 1.28 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.34 -10.86 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265116038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.552 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds