Wall clock time and date at job start Tue Mar 31 2020 18:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47244 * 2 1 4 4 C 1.36938 * 120.00282 * 264.29203 * 3 2 1 5 5 H 1.08000 * 120.00001 * 188.63974 * 4 3 2 6 6 C 1.38815 * 119.99804 * 8.63405 * 4 3 2 7 7 N 1.31619 * 120.00021 * 24.60510 * 6 4 3 8 8 Si 1.86799 * 119.99807 * 204.60719 * 6 4 3 9 9 H 1.48498 * 109.47172 * 85.03020 * 8 6 4 10 10 H 1.48501 * 109.47007 * 205.02664 * 8 6 4 11 11 H 1.48495 * 109.47199 * 325.02596 * 8 6 4 12 12 C 1.46505 * 120.00086 * 84.29003 * 3 2 1 13 13 C 1.53004 * 109.47053 * 270.00183 * 12 3 2 14 14 C 1.52997 * 109.46762 * 179.97438 * 13 12 3 15 15 N 1.46502 * 109.46850 * 180.02562 * 14 13 12 16 16 C 1.34770 * 120.00189 * 180.02562 * 15 14 13 17 17 O 1.21617 * 119.99945 * 359.97438 * 16 15 14 18 18 C 1.47385 * 120.00357 * 180.02562 * 16 15 14 19 19 N 1.29689 * 121.82442 * 359.96687 * 18 16 15 20 20 S 1.56015 * 111.73553 * 179.47468 * 19 18 16 21 21 C 1.76247 * 97.56346 * 0.54692 * 20 19 18 22 22 C 1.38693 * 134.18776 * 179.36633 * 21 20 19 23 23 C 1.36803 * 119.63255 * 179.97438 * 22 21 20 24 24 C 1.38902 * 120.30423 * 359.97438 * 23 22 21 25 25 C 1.36328 * 121.03845 * 0.02562 * 24 23 22 26 26 C 1.40414 * 119.95953 * 0.27095 * 25 24 23 27 27 H 1.09001 * 109.46843 * 299.99811 * 1 2 3 28 28 H 1.09001 * 109.46886 * 59.99650 * 1 2 3 29 29 H 1.09004 * 109.47229 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47570 * 240.00050 * 2 1 3 31 31 H 1.09002 * 109.47744 * 120.00025 * 2 1 3 32 32 H 0.96996 * 119.99634 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.47271 * 149.99801 * 12 3 2 34 34 H 1.09006 * 109.46926 * 30.00168 * 12 3 2 35 35 H 1.09004 * 109.46708 * 59.99915 * 13 12 3 36 36 H 1.08996 * 109.46825 * 300.00062 * 13 12 3 37 37 H 1.08997 * 109.47505 * 60.00245 * 14 13 12 38 38 H 1.09005 * 109.47592 * 299.99583 * 14 13 12 39 39 H 0.97004 * 120.00119 * 359.97438 * 15 14 13 40 40 H 1.08005 * 120.18740 * 0.02562 * 22 21 20 41 41 H 1.08001 * 119.85259 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.48515 * 180.02562 * 24 23 22 43 43 H 1.08000 * 120.02219 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3578 1.9875 -1.1800 5 1 2.8470 2.9502 -1.1713 6 6 2.0731 1.3645 -2.3874 7 7 1.0959 0.4858 -2.4602 8 14 3.0771 1.7731 -3.9087 9 1 4.3046 0.9378 -3.9309 10 1 2.2690 1.4977 -5.1238 11 1 3.4556 3.2088 -3.8810 12 6 2.1435 2.1139 1.2625 13 6 0.8338 2.8474 1.5584 14 6 0.9644 3.6121 2.8772 15 7 -0.2899 4.3139 3.1609 16 6 -0.4078 5.0582 4.2782 17 8 0.5269 5.1469 5.0512 18 6 -1.6698 5.7639 4.5640 19 7 -2.6887 5.6937 3.7647 20 16 -3.9009 6.5171 4.3002 21 6 -3.1391 7.1223 5.7698 22 6 -3.5543 7.9471 6.8047 23 6 -2.6942 8.2309 7.8300 24 6 -1.4120 7.6969 7.8374 25 6 -0.9833 6.8839 6.8306 26 6 -1.8413 6.5796 5.7615 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.8968 0.0508 -3.3040 33 1 2.9553 2.8371 1.1839 34 1 2.3579 1.4132 2.0695 35 1 0.0220 2.1241 1.6370 36 1 0.6194 3.5480 0.7514 37 1 1.7761 4.3353 2.7991 38 1 1.1785 2.9112 3.6840 39 1 -1.0353 4.2436 2.5442 40 1 -4.5513 8.3624 6.8015 41 1 -3.0139 8.8725 8.6378 42 1 -0.7441 7.9294 8.6537 43 1 0.0173 6.4780 6.8527 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265116038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:58 Heat of formation + Delta-G solvation = 27.000243 kcal Electronic energy + Delta-G solvation = -25033.183773 eV Core-core repulsion = 21397.965207 eV Total energy + Delta-G solvation = -3635.218566 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.70532 -40.15651 -38.32228 -37.94975 -36.37306 -33.80534 -32.22752 -32.10351 -31.60976 -30.71127 -27.94343 -26.39796 -24.98443 -24.05482 -23.31878 -22.57269 -22.09313 -21.30167 -19.74328 -18.74076 -18.59972 -17.58054 -17.02405 -17.00478 -16.56522 -16.19512 -16.17076 -15.82312 -15.50630 -15.31316 -14.98219 -14.72769 -14.59391 -14.32805 -13.71565 -13.40678 -13.30513 -13.17653 -13.11458 -12.92672 -12.72483 -12.63074 -12.57092 -12.43114 -12.16176 -12.12059 -11.73761 -11.68308 -11.37809 -11.19965 -11.12932 -10.89564 -10.34202 -10.24450 -10.11192 -8.95096 -8.83060 -7.79236 -5.10670 -0.80811 0.03549 0.25262 0.54716 0.60404 1.48057 1.51647 1.57398 1.91766 1.97117 2.55453 2.64481 3.19170 3.29621 3.52590 3.63320 3.84656 4.06586 4.08303 4.22132 4.32035 4.39562 4.44770 4.51574 4.64121 4.76010 4.76326 4.78427 4.87803 4.96551 5.03518 5.14354 5.18546 5.23058 5.30224 5.30868 5.35577 5.47288 5.52451 5.63641 5.82111 5.83615 6.17050 6.32223 6.38343 6.92689 7.23707 7.95609 8.35494 9.22624 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.021889 B = 0.002150 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.846371 B =13018.017559 C =13372.539060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.167 3.833 3 N -0.612 5.612 4 C -0.255 4.255 5 H 0.071 0.929 6 C -0.053 4.053 7 N -0.916 5.916 8 Si 0.954 3.046 9 H -0.290 1.290 10 H -0.299 1.299 11 H -0.277 1.277 12 C 0.152 3.848 13 C -0.135 4.135 14 C 0.131 3.869 15 N -0.703 5.703 16 C 0.583 3.417 17 O -0.554 6.554 18 C 0.066 3.934 19 N -0.513 5.513 20 S 0.434 5.566 21 C -0.213 4.213 22 C -0.073 4.073 23 C -0.079 4.079 24 C -0.110 4.110 25 C -0.069 4.069 26 C -0.114 4.114 27 H 0.028 0.972 28 H 0.057 0.943 29 H 0.031 0.969 30 H 0.056 0.944 31 H 0.024 0.976 32 H 0.245 0.755 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.412 0.588 40 H 0.167 0.833 41 H 0.176 0.824 42 H 0.161 0.839 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.989 15.984 22.631 30.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.042 3.958 3 N -0.334 5.334 4 C -0.384 4.384 5 H 0.089 0.911 6 C -0.248 4.248 7 N -0.563 5.563 8 Si 0.784 3.216 9 H -0.218 1.218 10 H -0.226 1.226 11 H -0.202 1.202 12 C 0.025 3.975 13 C -0.175 4.175 14 C 0.007 3.993 15 N -0.353 5.353 16 C 0.365 3.635 17 O -0.432 6.432 18 C -0.121 4.121 19 N -0.341 5.341 20 S 0.594 5.406 21 C -0.335 4.335 22 C -0.095 4.095 23 C -0.102 4.102 24 C -0.129 4.129 25 C -0.092 4.092 26 C -0.124 4.124 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.248 0.752 40 H 0.185 0.815 41 H 0.193 0.807 42 H 0.178 0.822 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.875 15.519 21.316 29.342 hybrid contribution 1.517 -0.125 -0.642 1.652 sum -11.358 15.393 20.675 28.167 Atomic orbital electron populations 1.22201 0.98692 0.98654 1.00038 1.20704 0.92988 0.84521 0.97616 1.44434 1.75996 1.10650 1.02320 1.19501 1.30718 1.03523 0.84701 0.91086 1.25352 0.98947 1.00824 0.99634 1.70312 1.28195 1.32996 1.24834 0.85471 0.78691 0.77687 0.79763 1.21768 1.22629 1.20189 1.20831 0.94510 0.94584 0.87549 1.22389 1.01437 0.99042 0.94669 1.21397 0.85067 0.95372 0.97430 1.45983 1.17795 1.48337 1.23229 1.17436 0.85591 0.78869 0.81624 1.90737 1.39873 1.64105 1.48502 1.21825 0.93942 1.02750 0.93551 1.71207 1.06780 1.23799 1.32351 1.81121 1.13692 1.37110 1.08641 1.24562 0.98222 1.05967 1.04701 1.20458 1.01939 0.95851 0.91213 1.21585 0.92520 0.97875 0.98234 1.21321 0.97578 0.95728 0.98269 1.20891 0.99387 0.97143 0.91763 1.19744 0.95987 1.00475 0.96230 0.95337 0.92460 0.95037 0.92567 0.95815 0.94543 0.93098 0.92233 0.92192 0.93340 0.91355 0.90834 0.75232 0.81529 0.80709 0.82173 0.85142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.25 9.58 71.98 0.69 -5.56 16 2 C 0.17 8.01 5.64 86.38 0.49 8.50 16 3 N -0.61 -29.79 2.54 -701.98 -1.78 -31.57 16 4 C -0.25 -13.70 9.70 84.03 0.82 -12.89 16 5 H 0.07 3.77 7.93 -2.91 -0.02 3.75 16 6 C -0.05 -2.89 4.91 84.86 0.42 -2.48 16 7 N -0.92 -51.97 8.54 21.65 0.18 -51.79 16 8 Si 0.95 45.00 29.62 68.60 2.03 47.03 16 9 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 10 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 C 0.15 5.93 5.71 86.38 0.49 6.42 16 13 C -0.13 -4.75 5.53 30.59 0.17 -4.58 16 14 C 0.13 3.98 5.67 86.38 0.49 4.47 16 15 N -0.70 -21.10 5.55 -466.41 -2.59 -23.69 16 16 C 0.58 18.27 7.81 86.65 0.68 18.94 16 17 O -0.55 -19.28 15.01 -4.09 -0.06 -19.34 16 18 C 0.07 1.85 6.82 43.86 0.30 2.15 16 19 N -0.51 -13.27 10.49 -64.53 -0.68 -13.95 16 20 S 0.43 7.98 23.36 -56.49 -1.32 6.66 16 21 C -0.21 -3.91 6.73 22.97 0.15 -3.75 16 22 C -0.07 -0.81 10.03 22.04 0.22 -0.59 16 23 C -0.08 -0.69 10.00 22.09 0.22 -0.46 16 24 C -0.11 -1.39 9.93 21.98 0.22 -1.17 16 25 C -0.07 -1.45 9.57 22.35 0.21 -1.24 16 26 C -0.11 -2.75 6.10 -20.17 -0.12 -2.87 16 27 H 0.03 1.18 5.98 -2.39 -0.01 1.16 16 28 H 0.06 3.03 6.28 -2.39 -0.01 3.01 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 3.05 5.87 -2.39 -0.01 3.04 16 31 H 0.02 1.02 7.97 -2.39 -0.02 1.00 16 32 H 0.24 13.69 8.31 -92.71 -0.77 12.92 16 33 H 0.05 1.94 8.03 -2.39 -0.02 1.92 16 34 H 0.06 2.09 7.95 -2.38 -0.02 2.08 16 35 H 0.06 2.20 5.93 -2.38 -0.01 2.18 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 39 H 0.41 11.92 7.91 -92.71 -0.73 11.19 16 40 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 41 H 0.18 0.13 8.06 -2.91 -0.02 0.11 16 42 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 43 H 0.13 3.09 6.64 -2.91 -0.02 3.07 16 Total: -1.00 -67.17 365.71 1.54 -65.62 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.31 Total: 16.12 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 5.44 Total: 4.91 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -4.86 Total: -121.00 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.06 Total: -19.34 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 7.98 SS G_CDS: -1.32 Total: 6.66 kcal Total: -67.17 1.54 -65.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265116038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.622 kcal (2) G-P(sol) polarization free energy of solvation -67.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds