Wall clock time and date at job start Tue Mar 31 2020 18:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47026 * 2 1 4 4 C 1.46497 * 120.00207 * 263.18804 * 3 2 1 5 5 C 1.53003 * 109.47283 * 269.99798 * 4 3 2 6 6 N 1.46497 * 109.47283 * 179.97438 * 5 4 3 7 7 C 1.36936 * 119.99991 * 180.02562 * 6 5 4 8 8 H 1.07996 * 119.99994 * 359.97438 * 7 6 5 9 9 C 1.38817 * 119.99840 * 179.97438 * 7 6 5 10 10 N 1.31619 * 119.99496 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 120.00083 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47006 * 90.00140 * 11 9 7 13 13 H 1.48503 * 109.46915 * 210.00117 * 11 9 7 14 14 H 1.48497 * 109.46914 * 330.00160 * 11 9 7 15 15 C 1.34780 * 120.00201 * 83.18643 * 3 2 1 16 16 O 1.21616 * 120.00414 * 184.02935 * 15 3 2 17 17 C 1.47387 * 119.99754 * 4.02568 * 15 3 2 18 18 N 1.29691 * 121.82758 * 354.07505 * 17 15 3 19 19 S 1.56000 * 111.74185 * 180.02562 * 18 17 15 20 20 C 1.76254 * 97.56102 * 359.97438 * 19 18 17 21 21 C 1.38700 * 134.18603 * 180.02562 * 20 19 18 22 22 C 1.36803 * 119.63101 * 179.97438 * 21 20 19 23 23 C 1.38907 * 120.30458 * 0.02562 * 22 21 20 24 24 C 1.50702 * 119.48300 * 180.26928 * 23 22 21 25 25 C 1.36332 * 121.03546 * 359.97438 * 23 22 21 26 26 C 1.40411 * 119.96068 * 0.02562 * 25 23 22 27 27 H 1.09003 * 109.47280 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47125 * 299.99759 * 1 2 3 29 29 H 1.08999 * 109.47698 * 59.99834 * 1 2 3 30 30 H 1.08998 * 109.47409 * 240.00068 * 2 1 3 31 31 H 1.08996 * 109.47243 * 119.99953 * 2 1 3 32 32 H 1.08999 * 109.46985 * 30.00170 * 4 3 2 33 33 H 1.09002 * 109.47166 * 150.00159 * 4 3 2 34 34 H 1.08996 * 109.46909 * 300.00024 * 5 4 3 35 35 H 1.09002 * 109.46725 * 60.00090 * 5 4 3 36 36 H 0.97003 * 120.00231 * 359.97438 * 6 5 4 37 37 H 0.97001 * 119.99826 * 179.97438 * 10 9 7 38 38 H 1.08004 * 120.18752 * 0.02562 * 21 20 19 39 39 H 1.07998 * 119.85068 * 179.97438 * 22 21 20 40 40 H 1.08998 * 109.47636 * 269.72909 * 24 23 22 41 41 H 1.09009 * 109.46776 * 29.72849 * 24 23 22 42 42 H 1.09000 * 109.47447 * 149.72475 * 24 23 22 43 43 H 1.08007 * 120.01728 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4043 2.0217 -1.2597 5 6 3.8891 1.7673 -1.5272 6 7 4.2750 2.4073 -2.7872 7 6 5.5655 2.3136 -3.2356 8 1 6.2989 1.7683 -2.6601 9 6 5.9310 2.9196 -4.4298 10 7 7.1715 2.8300 -4.8605 11 14 4.6623 3.8622 -5.4256 12 1 4.6518 5.2835 -4.9953 13 1 5.0075 3.7841 -6.8678 14 1 3.3193 3.2683 -5.2051 15 6 2.1123 2.0628 1.1590 16 8 2.4475 3.2318 1.1515 17 6 1.8089 1.3913 2.4354 18 7 1.3405 0.1827 2.4780 19 16 1.1049 -0.2944 3.9445 20 6 1.6447 1.1742 4.7557 21 6 1.7493 1.5628 6.0831 22 6 2.2215 2.8101 6.3875 23 6 2.5945 3.6848 5.3750 24 6 3.1180 5.0522 5.7316 25 6 2.4999 3.3235 4.0638 26 6 2.0188 2.0499 3.7203 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.8119 1.6064 -2.0749 33 1 2.2262 3.0949 -1.1912 34 1 4.4815 2.1827 -0.7119 35 1 4.0673 0.6941 -1.5957 36 1 3.6163 2.8968 -3.3043 37 1 7.4269 3.2531 -5.6952 38 1 1.4603 0.8841 6.8720 39 1 2.3040 3.1164 7.4199 40 1 2.2881 5.7569 5.7835 41 1 3.6187 5.0086 6.6989 42 1 3.8260 5.3801 4.9705 43 1 2.7949 4.0166 3.2898 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268470009.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:17 Heat of formation + Delta-G solvation = 50.440183 kcal Electronic energy + Delta-G solvation = -25825.500161 eV Core-core repulsion = 22191.298027 eV Total energy + Delta-G solvation = -3634.202134 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.99714 -39.47736 -37.37583 -36.32546 -34.69659 -32.90315 -31.79115 -31.10192 -30.49194 -28.46889 -27.34384 -25.98213 -23.85300 -23.49551 -22.82550 -21.61493 -21.12317 -19.36771 -18.86168 -17.62877 -17.21731 -16.67177 -15.99848 -15.74356 -15.57539 -14.85591 -14.77392 -14.37002 -14.18071 -13.94254 -13.84969 -13.71557 -13.61587 -13.54137 -12.75292 -12.57695 -12.51322 -12.33739 -12.19704 -12.08197 -11.93704 -11.55321 -11.43174 -11.13926 -11.12838 -10.98728 -10.74352 -10.57661 -10.15248 -9.98966 -9.79718 -9.57743 -9.24015 -8.87833 -8.62711 -8.10556 -7.22795 -5.74433 -3.10696 0.05933 0.76868 1.04801 1.39092 1.50819 2.87081 2.97229 3.36795 3.39789 3.43356 3.47684 3.98219 4.22241 4.45850 4.61618 4.65436 4.82270 4.99924 5.02304 5.08618 5.24629 5.26985 5.34785 5.36820 5.45636 5.53841 5.57576 5.60617 5.70319 5.72309 5.73424 5.79259 5.80010 5.90442 5.96645 6.01134 6.20511 6.23721 6.49056 6.50242 6.64471 6.81108 7.35830 8.00038 8.08078 8.43814 9.22276 9.94373 10.13735 11.43930 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.002992 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.603700 B = 9354.892440 C =10606.261702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.097 3.903 3 N -0.585 5.585 4 C 0.103 3.897 5 C 0.147 3.853 6 N -0.753 5.753 7 C -0.243 4.243 8 H 0.090 0.910 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.277 1.277 15 C 0.584 3.416 16 O -0.520 6.520 17 C 0.096 3.904 18 N -0.472 5.472 19 S 0.357 5.643 20 C -0.200 4.200 21 C -0.073 4.073 22 C -0.088 4.088 23 C -0.085 4.085 24 C -0.116 4.116 25 C -0.043 4.043 26 C -0.082 4.082 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.031 0.969 35 H 0.027 0.973 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.793 -4.784 25.618 31.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.027 4.027 3 N -0.317 5.317 4 C -0.019 4.019 5 C 0.019 3.981 6 N -0.399 5.399 7 C -0.373 4.373 8 H 0.108 0.892 9 C -0.191 4.191 10 N -0.582 5.582 11 Si 0.716 3.284 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.203 1.203 15 C 0.366 3.634 16 O -0.395 6.395 17 C -0.091 4.091 18 N -0.298 5.298 19 S 0.518 5.482 20 C -0.320 4.320 21 C -0.095 4.095 22 C -0.111 4.111 23 C -0.087 4.087 24 C -0.173 4.173 25 C -0.065 4.065 26 C -0.092 4.092 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.183 -6.367 25.212 31.168 hybrid contribution -0.164 2.159 -0.863 2.331 sum -17.346 -4.208 24.349 30.190 Atomic orbital electron populations 1.22050 0.95793 1.01924 1.01631 1.22070 0.94667 0.81795 1.04203 1.47763 1.62894 1.14638 1.06423 1.21825 0.97186 0.99343 0.83542 1.20891 0.91459 0.96376 0.89413 1.42547 1.09700 1.64827 1.22836 1.19031 0.85439 1.28712 1.04090 0.89245 1.24670 0.96085 1.00558 0.97819 1.69705 1.16251 1.49123 1.23146 0.86521 0.81404 0.80507 0.79948 1.20951 1.21705 1.20318 1.17208 0.78364 0.85784 0.82018 1.90804 1.47493 1.15216 1.86007 1.21930 1.02585 0.89600 0.95020 1.72252 1.19139 1.16407 1.21977 1.81546 1.59715 1.15927 0.91057 1.24188 1.07685 1.01501 0.98670 1.19901 1.00118 0.96827 0.92630 1.20962 0.97609 0.93023 0.99485 1.19674 0.99208 0.97172 0.92670 1.20853 1.01297 0.92607 1.02527 1.20733 0.95513 0.93688 0.96557 1.19530 1.03555 0.96518 0.89630 0.91701 0.92781 0.92859 0.90157 0.87474 0.90161 0.89414 0.95069 0.95463 0.80629 0.93038 0.84843 0.84826 0.90786 0.91229 0.90826 0.83344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.67 37.16 0.36 -1.30 16 2 C 0.10 1.19 5.70 -4.04 -0.02 1.16 16 3 N -0.58 -8.83 2.49 -174.97 -0.44 -9.27 16 4 C 0.10 1.74 5.52 -4.04 -0.02 1.72 16 5 C 0.15 3.05 6.58 -4.04 -0.03 3.03 16 6 N -0.75 -18.72 5.41 -59.91 -0.32 -19.05 16 7 C -0.24 -7.14 10.47 -15.06 -0.16 -7.30 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 9 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 10 N -0.93 -29.98 13.97 55.49 0.78 -29.20 16 11 Si 0.89 22.56 27.74 -169.99 -4.71 17.84 16 12 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 14 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 15 C 0.58 9.42 7.60 -12.53 -0.10 9.32 16 16 O -0.52 -9.69 14.60 5.26 0.08 -9.61 16 17 C 0.10 1.33 6.56 -81.98 -0.54 0.79 16 18 N -0.47 -5.59 5.64 28.25 0.16 -5.43 16 19 S 0.36 3.31 23.36 -107.50 -2.51 0.80 16 20 C -0.20 -2.07 6.73 -38.49 -0.26 -2.32 16 21 C -0.07 -0.58 10.03 -39.93 -0.40 -0.98 16 22 C -0.09 -0.67 9.63 -39.85 -0.38 -1.05 16 23 C -0.09 -0.79 5.84 -105.06 -0.61 -1.41 16 24 C -0.12 -0.81 9.98 36.01 0.36 -0.45 16 25 C -0.04 -0.52 9.18 -39.45 -0.36 -0.88 16 26 C -0.08 -1.05 6.10 -105.10 -0.64 -1.69 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.62 6.95 -51.93 -0.36 0.26 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.94 8.02 -51.93 -0.42 0.53 16 31 H 0.11 1.31 5.22 -51.94 -0.27 1.04 16 32 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 33 H 0.09 1.57 7.37 -51.93 -0.38 1.18 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.36 8.63 5.53 -40.82 -0.23 8.40 16 37 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 38 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 39 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.37 8.07 -51.92 -0.42 -0.05 16 42 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 43 H 0.15 1.97 6.66 -52.48 -0.35 1.62 16 LS Contribution 366.18 15.07 5.52 5.52 Total: -1.00 -34.51 366.18 -10.17 -44.67 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.81 Total: 5.05 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -2.90 Total: -1.32 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: 0.18 Total: -62.95 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.71 Total: 17.84 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -2.51 Total: 0.80 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.51 -10.17 -44.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268470009.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.115 kcal (2) G-P(sol) polarization free energy of solvation -34.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds