Wall clock time and date at job start Tue Mar 31 2020 18:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47026 * 2 1 4 4 C 1.46497 * 120.00207 * 263.18804 * 3 2 1 5 5 C 1.53003 * 109.47283 * 269.99798 * 4 3 2 6 6 N 1.46497 * 109.47283 * 179.97438 * 5 4 3 7 7 C 1.36936 * 119.99991 * 180.02562 * 6 5 4 8 8 H 1.07996 * 119.99994 * 359.97438 * 7 6 5 9 9 C 1.38817 * 119.99840 * 179.97438 * 7 6 5 10 10 N 1.31619 * 119.99496 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 120.00083 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47006 * 90.00140 * 11 9 7 13 13 H 1.48503 * 109.46915 * 210.00117 * 11 9 7 14 14 H 1.48497 * 109.46914 * 330.00160 * 11 9 7 15 15 C 1.34780 * 120.00201 * 83.18643 * 3 2 1 16 16 O 1.21616 * 120.00414 * 184.02935 * 15 3 2 17 17 C 1.47387 * 119.99754 * 4.02568 * 15 3 2 18 18 N 1.29691 * 121.82758 * 354.07505 * 17 15 3 19 19 S 1.56000 * 111.74185 * 180.02562 * 18 17 15 20 20 C 1.76254 * 97.56102 * 359.97438 * 19 18 17 21 21 C 1.38700 * 134.18603 * 180.02562 * 20 19 18 22 22 C 1.36803 * 119.63101 * 179.97438 * 21 20 19 23 23 C 1.38907 * 120.30458 * 0.02562 * 22 21 20 24 24 C 1.50702 * 119.48300 * 180.26928 * 23 22 21 25 25 C 1.36332 * 121.03546 * 359.97438 * 23 22 21 26 26 C 1.40411 * 119.96068 * 0.02562 * 25 23 22 27 27 H 1.09003 * 109.47280 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47125 * 299.99759 * 1 2 3 29 29 H 1.08999 * 109.47698 * 59.99834 * 1 2 3 30 30 H 1.08998 * 109.47409 * 240.00068 * 2 1 3 31 31 H 1.08996 * 109.47243 * 119.99953 * 2 1 3 32 32 H 1.08999 * 109.46985 * 30.00170 * 4 3 2 33 33 H 1.09002 * 109.47166 * 150.00159 * 4 3 2 34 34 H 1.08996 * 109.46909 * 300.00024 * 5 4 3 35 35 H 1.09002 * 109.46725 * 60.00090 * 5 4 3 36 36 H 0.97003 * 120.00231 * 359.97438 * 6 5 4 37 37 H 0.97001 * 119.99826 * 179.97438 * 10 9 7 38 38 H 1.08004 * 120.18752 * 0.02562 * 21 20 19 39 39 H 1.07998 * 119.85068 * 179.97438 * 22 21 20 40 40 H 1.08998 * 109.47636 * 269.72909 * 24 23 22 41 41 H 1.09009 * 109.46776 * 29.72849 * 24 23 22 42 42 H 1.09000 * 109.47447 * 149.72475 * 24 23 22 43 43 H 1.08007 * 120.01728 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4043 2.0217 -1.2597 5 6 3.8891 1.7673 -1.5272 6 7 4.2750 2.4073 -2.7872 7 6 5.5655 2.3136 -3.2356 8 1 6.2989 1.7683 -2.6601 9 6 5.9310 2.9196 -4.4298 10 7 7.1715 2.8300 -4.8605 11 14 4.6623 3.8622 -5.4256 12 1 4.6518 5.2835 -4.9953 13 1 5.0075 3.7841 -6.8678 14 1 3.3193 3.2683 -5.2051 15 6 2.1123 2.0628 1.1590 16 8 2.4475 3.2318 1.1515 17 6 1.8089 1.3913 2.4354 18 7 1.3405 0.1827 2.4780 19 16 1.1049 -0.2944 3.9445 20 6 1.6447 1.1742 4.7557 21 6 1.7493 1.5628 6.0831 22 6 2.2215 2.8101 6.3875 23 6 2.5945 3.6848 5.3750 24 6 3.1180 5.0522 5.7316 25 6 2.4999 3.3235 4.0638 26 6 2.0188 2.0499 3.7203 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.8119 1.6064 -2.0749 33 1 2.2262 3.0949 -1.1912 34 1 4.4815 2.1827 -0.7119 35 1 4.0673 0.6941 -1.5957 36 1 3.6163 2.8968 -3.3043 37 1 7.4269 3.2531 -5.6952 38 1 1.4603 0.8841 6.8720 39 1 2.3040 3.1164 7.4199 40 1 2.2881 5.7569 5.7835 41 1 3.6187 5.0086 6.6989 42 1 3.8260 5.3801 4.9705 43 1 2.7949 4.0166 3.2898 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268470009.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:16 Heat of formation + Delta-G solvation = 29.037779 kcal Electronic energy + Delta-G solvation = -25826.428239 eV Core-core repulsion = 22191.298027 eV Total energy + Delta-G solvation = -3635.130212 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.96362 -40.43838 -38.29223 -37.71421 -36.45690 -33.88430 -33.50993 -31.96051 -31.74619 -29.95707 -28.02893 -27.22699 -25.33221 -24.45202 -23.95760 -23.17163 -22.12218 -20.54148 -19.84055 -19.53031 -18.24734 -17.71333 -17.11409 -16.81987 -16.46487 -16.34798 -15.99194 -15.60741 -15.42259 -15.26522 -15.06565 -14.83700 -14.70353 -14.58646 -14.41618 -13.78533 -13.45042 -13.19349 -13.06994 -13.02239 -12.96340 -12.88284 -12.81740 -12.61590 -12.43513 -12.28142 -12.12405 -11.85762 -11.75017 -11.64689 -11.05183 -10.89148 -10.77264 -9.97546 -9.85042 -9.40769 -8.86377 -8.07700 -5.44124 -0.81535 0.00134 0.28554 0.54048 0.63713 1.35938 1.41361 1.47895 1.73185 1.90733 2.45392 2.57131 3.12435 3.23144 3.32489 3.66503 3.75704 3.90392 4.03537 4.07230 4.12322 4.20321 4.33895 4.35829 4.39738 4.47012 4.57488 4.70191 4.75632 4.79708 4.83200 4.93369 4.96895 4.97857 5.04710 5.11904 5.16735 5.26768 5.32683 5.45121 5.56172 5.67892 5.82720 6.14804 6.18907 6.87798 7.00386 7.72434 7.94984 9.13658 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.002992 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.603700 B = 9354.892440 C =10606.261702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.094 3.906 3 N -0.586 5.586 4 C 0.117 3.883 5 C 0.152 3.848 6 N -0.753 5.753 7 C -0.244 4.244 8 H 0.051 0.949 9 C -0.061 4.061 10 N -0.982 5.982 11 Si 0.960 3.040 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.245 1.245 15 C 0.576 3.424 16 O -0.560 6.560 17 C 0.065 3.935 18 N -0.479 5.479 19 S 0.429 5.571 20 C -0.216 4.216 21 C -0.065 4.065 22 C -0.083 4.083 23 C -0.081 4.081 24 C -0.117 4.117 25 C -0.080 4.080 26 C -0.106 4.106 27 H 0.087 0.913 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.004 0.996 35 H 0.031 0.969 36 H 0.369 0.631 37 H 0.261 0.739 38 H 0.172 0.828 39 H 0.173 0.827 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.059 0.941 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.655 -5.797 27.880 34.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 N -0.317 5.317 4 C -0.006 4.006 5 C 0.024 3.976 6 N -0.399 5.399 7 C -0.375 4.375 8 H 0.069 0.931 9 C -0.252 4.252 10 N -0.632 5.632 11 Si 0.786 3.214 12 H -0.205 1.205 13 H -0.216 1.216 14 H -0.169 1.169 15 C 0.361 3.639 16 O -0.438 6.438 17 C -0.121 4.121 18 N -0.307 5.307 19 S 0.590 5.410 20 C -0.337 4.337 21 C -0.086 4.086 22 C -0.106 4.106 23 C -0.082 4.082 24 C -0.173 4.173 25 C -0.102 4.102 26 C -0.116 4.116 27 H 0.105 0.895 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.023 0.977 35 H 0.049 0.951 36 H 0.203 0.797 37 H 0.070 0.930 38 H 0.189 0.811 39 H 0.191 0.809 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.089 -7.418 27.512 34.864 hybrid contribution 0.783 2.358 -1.345 2.825 sum -19.306 -5.060 26.167 32.909 Atomic orbital electron populations 1.21972 0.94226 1.03165 1.01100 1.22270 0.95899 0.80107 1.04645 1.47852 1.62680 1.15650 1.05557 1.21541 0.94465 0.99221 0.85379 1.20915 0.94041 0.95796 0.86846 1.42465 1.08221 1.65199 1.24047 1.18965 0.86717 1.27924 1.03847 0.93090 1.25577 0.98513 1.01958 0.99195 1.69892 1.18834 1.50592 1.23857 0.85343 0.79754 0.78761 0.77556 1.20530 1.21612 1.16932 1.17667 0.77568 0.85547 0.83121 1.90768 1.49271 1.16962 1.86771 1.21563 1.05751 0.90546 0.94267 1.71903 1.18390 1.15694 1.24729 1.81186 1.57011 1.14019 0.88755 1.24488 1.08248 1.01609 0.99318 1.20436 0.98403 0.97479 0.92324 1.21408 0.96092 0.92363 1.00729 1.20003 0.97897 0.98385 0.91943 1.20920 1.01501 0.91602 1.03281 1.20672 0.98330 0.93804 0.97413 1.19643 1.04647 0.97314 0.89989 0.89469 0.93772 0.92885 0.89447 0.87344 0.87565 0.90584 0.97750 0.95067 0.79683 0.93049 0.81080 0.80926 0.89788 0.88743 0.92188 0.86222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.67 71.98 0.70 -2.18 16 2 C 0.09 2.22 5.70 86.38 0.49 2.71 16 3 N -0.59 -18.01 2.49 -825.74 -2.06 -20.06 16 4 C 0.12 3.96 5.52 86.38 0.48 4.44 16 5 C 0.15 6.48 6.58 86.38 0.57 7.05 16 6 N -0.75 -37.75 5.41 -343.46 -1.86 -39.61 16 7 C -0.24 -14.77 10.47 84.03 0.88 -13.89 16 8 H 0.05 3.40 8.06 -2.91 -0.02 3.38 16 9 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 10 N -0.98 -64.76 13.97 21.65 0.30 -64.46 16 11 Si 0.96 46.55 27.74 68.60 1.90 48.45 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 13 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 14 H -0.25 -10.52 6.52 99.48 0.65 -9.87 16 15 C 0.58 19.65 7.60 86.65 0.66 20.31 16 16 O -0.56 -22.63 14.60 -4.08 -0.06 -22.69 16 17 C 0.06 1.83 6.56 43.86 0.29 2.12 16 18 N -0.48 -10.98 5.64 -64.54 -0.36 -11.34 16 19 S 0.43 6.99 23.36 -56.49 -1.32 5.67 16 20 C -0.22 -4.09 6.73 22.97 0.15 -3.93 16 21 C -0.06 -0.81 10.03 22.04 0.22 -0.59 16 22 C -0.08 -0.99 9.63 22.09 0.21 -0.78 16 23 C -0.08 -1.44 5.84 -20.15 -0.12 -1.55 16 24 C -0.12 -1.51 9.98 71.24 0.71 -0.80 16 25 C -0.08 -2.05 9.18 22.35 0.21 -1.85 16 26 C -0.11 -2.78 6.10 -20.17 -0.12 -2.90 16 27 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.04 0.96 6.95 -2.38 -0.02 0.94 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.93 8.02 -2.39 -0.02 1.91 16 31 H 0.11 2.57 5.22 -2.40 -0.01 2.56 16 32 H 0.11 3.04 8.07 -2.39 -0.02 3.02 16 33 H 0.08 2.77 7.37 -2.39 -0.02 2.75 16 34 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.37 17.22 5.53 -92.71 -0.51 16.71 16 37 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 38 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 39 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.09 0.75 8.07 -2.38 -0.02 0.73 16 42 H 0.06 0.94 8.07 -2.39 -0.02 0.92 16 43 H 0.12 3.66 6.66 -2.91 -0.02 3.64 16 Total: -1.00 -79.50 366.18 2.81 -76.69 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.47 Total: 22.46 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 5.79 Total: 4.90 kcal Atomic # 7 Polarization: -131.50 SS G_CDS: -3.97 Total: -135.48 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.06 Total: -22.69 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.90 Total: 48.45 kcal Atomic # 16 Polarization: 6.99 SS G_CDS: -1.32 Total: 5.67 kcal Total: -79.50 2.81 -76.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268470009.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.732 kcal (2) G-P(sol) polarization free energy of solvation -79.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds