Wall clock time and date at job start Tue Mar 31 2020 18:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47031 * 2 1 4 4 N 1.46498 * 109.47246 * 239.99562 * 2 1 3 5 5 C 1.36931 * 119.99950 * 85.00215 * 4 2 1 6 6 H 1.08002 * 120.00000 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00113 * 180.02562 * 5 4 2 8 8 N 1.31615 * 120.00124 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00060 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47189 * 90.00014 * 9 7 5 11 11 H 1.48502 * 109.47157 * 210.00203 * 9 7 5 12 12 H 1.48501 * 109.47052 * 330.00336 * 9 7 5 13 13 C 1.53004 * 109.46609 * 119.99888 * 2 1 3 14 14 H 1.08994 * 110.88803 * 63.87968 * 13 2 1 15 15 C 1.55155 * 111.00315 * 299.99682 * 13 2 1 16 16 C 1.54325 * 102.93993 * 206.38762 * 15 13 2 17 17 N 1.47017 * 107.27176 * 22.19826 * 16 15 13 18 18 C 1.34781 * 125.64597 * 181.02366 * 17 16 15 19 19 O 1.21720 * 119.99480 * 180.02562 * 18 17 16 20 20 C 1.46487 * 120.00298 * 0.02562 * 18 17 16 21 21 C 1.36111 * 125.71374 * 179.97438 * 20 18 17 22 22 C 1.42230 * 107.62843 * 180.02562 * 21 20 18 23 23 C 1.45591 * 140.78057 * 179.97438 * 22 21 20 24 24 C 1.31809 * 114.63487 * 180.02562 * 23 22 21 25 25 S 1.75361 * 111.24347 * 359.97438 * 24 23 22 26 26 C 1.38172 * 106.99400 * 0.02562 * 22 21 20 27 27 N 1.37465 * 108.17007 * 359.97438 * 26 22 21 28 28 H 0.96991 * 125.68644 * 179.73236 * 27 26 22 29 29 C 1.47424 * 108.70182 * 1.28353 * 17 16 15 30 30 H 1.08997 * 109.47031 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47038 * 300.00425 * 1 2 3 32 32 H 1.09002 * 109.46569 * 60.00461 * 1 2 3 33 33 H 0.96998 * 119.99793 * 265.00835 * 4 2 1 34 34 H 0.96995 * 120.00159 * 180.02562 * 8 7 5 35 35 H 1.09006 * 110.72315 * 88.02917 * 15 13 2 36 36 H 1.08996 * 110.87431 * 324.82155 * 15 13 2 37 37 H 1.09001 * 109.88513 * 262.77285 * 16 15 13 38 38 H 1.09007 * 110.01039 * 141.68547 * 16 15 13 39 39 H 1.07998 * 126.18559 * 0.07055 * 21 20 18 40 40 H 1.07999 * 122.68043 * 0.05493 * 23 22 21 41 41 H 1.07998 * 124.38333 * 180.02562 * 24 23 22 42 42 H 1.09000 * 110.36458 * 94.49172 * 29 17 16 43 43 H 1.09005 * 110.36546 * 216.80719 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1493 -0.0077 -2.3757 6 1 1.8920 1.0402 -2.4243 7 6 2.6115 -0.6622 -3.5091 8 7 2.9235 -1.9395 -3.4503 9 14 2.7893 0.2694 -5.1185 10 1 4.1515 0.8545 -5.2039 11 1 2.5784 -0.6621 -6.2556 12 1 1.7793 1.3566 -5.1753 13 6 2.0400 -0.7213 1.2493 14 1 1.7468 -1.7710 1.2389 15 6 1.5425 -0.0177 2.5396 16 6 2.6244 -0.3900 3.5753 17 7 3.8421 -0.7378 2.8286 18 6 5.0089 -1.1384 3.3716 19 8 5.9559 -1.4010 2.6533 20 6 5.1373 -1.2578 4.8259 21 6 6.2556 -1.6504 5.4952 22 6 5.9550 -1.6302 6.8852 23 6 6.5718 -1.8973 8.1767 24 6 5.7820 -1.7024 9.2137 25 16 4.1904 -1.1670 8.7084 26 6 4.6415 -1.2192 7.0084 27 7 4.1435 -0.9918 5.7475 28 1 3.2429 -0.6978 5.5395 29 6 3.5776 -0.5697 1.3881 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 2.2490 -1.6318 -1.1525 34 1 3.2469 -2.3967 -4.2422 35 1 0.5700 -0.4072 2.8409 36 1 1.4975 1.0624 2.4003 37 1 2.2942 -1.2450 4.1652 38 1 2.8210 0.4585 4.2307 39 1 7.2005 -1.9265 5.0511 40 1 7.5950 -2.2282 8.2769 41 1 6.0770 -1.8521 10.2417 42 1 3.8952 0.4190 1.0569 43 1 4.0878 -1.3445 0.8157 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271509792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:08 Heat of formation + Delta-G solvation = 57.922547 kcal Electronic energy + Delta-G solvation = -25649.071315 eV Core-core repulsion = 22015.193641 eV Total energy + Delta-G solvation = -3633.877674 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.64423 -39.71141 -37.80567 -35.72516 -35.22475 -32.58024 -30.79565 -30.69536 -29.45129 -28.49429 -27.84654 -24.51175 -24.03025 -23.16936 -21.97991 -21.50276 -20.36493 -19.75308 -19.56512 -18.46218 -17.22611 -16.78955 -16.28270 -15.65141 -15.36441 -15.13244 -14.80774 -14.66835 -14.27850 -13.94445 -13.82091 -13.57234 -13.28810 -13.02052 -12.81955 -12.75959 -12.27358 -12.16815 -12.13272 -11.91336 -11.73031 -11.43043 -11.12730 -10.93833 -10.87249 -10.68590 -10.61486 -10.25903 -10.16535 -9.92455 -9.75566 -9.65852 -8.93528 -8.75457 -8.55340 -7.93485 -6.99023 -5.77346 -3.06881 0.78035 1.05035 1.17510 1.68454 2.63796 2.73370 2.96352 3.27732 3.43512 3.48405 3.50216 4.18247 4.40422 4.50874 4.53832 4.68154 4.70179 4.81307 5.02880 5.15744 5.20267 5.32726 5.46896 5.48577 5.54830 5.73914 5.78763 5.80930 5.82447 5.87695 5.93522 6.08945 6.13313 6.19520 6.28556 6.32994 6.44008 6.48011 6.56068 6.79084 6.87308 7.01091 7.39105 7.68667 8.03156 8.40404 9.51946 10.07788 10.42119 11.45064 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025389 B = 0.002342 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.582049 B =11950.352743 C =12822.163318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.724 5.724 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.101 4.101 14 H 0.084 0.916 15 C -0.121 4.121 16 C 0.086 3.914 17 N -0.617 5.617 18 C 0.598 3.402 19 O -0.517 6.517 20 C 0.001 3.999 21 C -0.071 4.071 22 C -0.163 4.163 23 C -0.068 4.068 24 C -0.223 4.223 25 S 0.128 5.872 26 C -0.014 4.014 27 N -0.529 5.529 28 H 0.421 0.579 29 C 0.120 3.880 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.054 0.946 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.158 0.842 40 H 0.145 0.855 41 H 0.170 0.830 42 H 0.075 0.925 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 2.187 27.555 27.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.365 5.365 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.121 4.121 14 H 0.102 0.898 15 C -0.160 4.160 16 C -0.037 4.037 17 N -0.351 5.351 18 C 0.386 3.614 19 O -0.392 6.392 20 C -0.112 4.112 21 C -0.099 4.099 22 C -0.175 4.175 23 C -0.098 4.098 24 C -0.357 4.357 25 S 0.381 5.619 26 C -0.243 4.243 27 N -0.137 5.137 28 H 0.265 0.735 29 C -0.001 4.001 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.176 0.824 40 H 0.163 0.837 41 H 0.187 0.813 42 H 0.093 0.907 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.722 2.557 27.691 27.818 hybrid contribution 0.888 -0.092 -1.653 1.879 sum 0.166 2.465 26.038 26.155 Atomic orbital electron populations 1.22455 0.99049 1.00930 1.00036 1.20141 0.91953 0.95159 0.85284 0.93242 1.42411 1.78174 1.10701 1.05236 1.19183 1.36850 0.93820 0.87251 0.91220 1.24737 1.02052 0.95943 0.98063 1.69651 1.50643 1.08612 1.28964 0.86223 0.77807 0.78582 0.83746 1.21689 1.21818 1.20829 1.22732 0.93549 1.00882 0.94943 0.89800 1.22670 0.97110 1.01958 0.94226 1.22260 0.86337 0.99042 0.96090 1.48508 1.10739 1.66394 1.09424 1.16589 0.82045 0.77743 0.85020 1.90913 1.37467 1.50179 1.60679 1.20082 0.89777 1.12297 0.89075 1.20749 0.97968 1.01350 0.89804 1.19397 0.92929 1.11083 0.94131 1.20348 1.00476 1.00007 0.88994 1.24853 0.96532 1.11409 1.02906 1.83889 1.13732 1.73945 0.90358 1.23618 0.98179 1.10709 0.91793 1.42199 1.13588 1.55524 1.02401 0.73457 1.22399 0.96066 1.03117 0.78498 0.93474 0.94415 0.92675 0.78237 0.93469 0.89686 0.89889 0.91726 0.91683 0.82445 0.83699 0.81256 0.90686 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.27 37.16 0.34 -2.32 16 2 C 0.19 3.32 2.43 -67.93 -0.17 3.15 16 3 H 0.05 0.91 8.01 -51.93 -0.42 0.49 16 4 N -0.72 -17.19 4.97 -53.42 -0.27 -17.46 16 5 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 6 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 9 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C -0.10 -1.48 2.67 -88.35 -0.24 -1.71 16 14 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 15 C -0.12 -1.24 5.28 -24.90 -0.13 -1.38 16 16 C 0.09 0.85 5.10 -3.07 -0.02 0.84 16 17 N -0.62 -8.68 3.32 -171.98 -0.57 -9.25 16 18 C 0.60 9.42 7.81 -12.94 -0.10 9.31 16 19 O -0.52 -10.11 17.10 5.17 0.09 -10.02 16 20 C 0.00 0.01 6.82 -82.47 -0.56 -0.55 16 21 C -0.07 -0.90 10.58 -38.81 -0.41 -1.31 16 22 C -0.16 -1.84 6.80 -105.46 -0.72 -2.56 16 23 C -0.07 -0.59 10.42 -38.55 -0.40 -0.99 16 24 C -0.22 -1.61 11.03 28.84 0.32 -1.30 16 25 S 0.13 1.01 23.24 -107.50 -2.50 -1.49 16 26 C -0.01 -0.15 8.41 -15.05 -0.13 -0.28 16 27 N -0.53 -5.60 5.69 -7.94 -0.05 -5.65 16 28 H 0.42 3.49 4.83 -40.82 -0.20 3.30 16 29 C 0.12 1.97 6.24 -2.41 -0.02 1.95 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.48 7.27 -51.93 -0.38 0.10 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.38 9.85 7.80 -40.82 -0.32 9.53 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 36 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 37 H 0.06 0.54 7.06 -51.93 -0.37 0.17 16 38 H 0.07 0.53 7.21 -51.93 -0.37 0.15 16 39 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.07 1.29 7.99 -51.93 -0.41 0.87 16 43 H 0.09 1.73 8.03 -51.93 -0.42 1.32 16 LS Contribution 365.66 15.07 5.51 5.51 Total: -1.00 -32.85 365.66 -10.35 -43.20 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -5.80 Total: 9.26 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -2.47 Total: -4.17 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.16 Total: -59.56 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.50 Total: -1.49 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.85 -10.35 -43.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271509792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.122 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds