Wall clock time and date at job start Tue Mar 31 2020 18:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47031 * 2 1 4 4 N 1.46498 * 109.47246 * 239.99562 * 2 1 3 5 5 C 1.36931 * 119.99950 * 85.00215 * 4 2 1 6 6 H 1.08002 * 120.00000 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00113 * 180.02562 * 5 4 2 8 8 N 1.31615 * 120.00124 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00060 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47189 * 90.00014 * 9 7 5 11 11 H 1.48502 * 109.47157 * 210.00203 * 9 7 5 12 12 H 1.48501 * 109.47052 * 330.00336 * 9 7 5 13 13 C 1.53004 * 109.46609 * 119.99888 * 2 1 3 14 14 H 1.08994 * 110.88803 * 63.87968 * 13 2 1 15 15 C 1.55155 * 111.00315 * 299.99682 * 13 2 1 16 16 C 1.54325 * 102.93993 * 206.38762 * 15 13 2 17 17 N 1.47017 * 107.27176 * 22.19826 * 16 15 13 18 18 C 1.34781 * 125.64597 * 181.02366 * 17 16 15 19 19 O 1.21720 * 119.99480 * 180.02562 * 18 17 16 20 20 C 1.46487 * 120.00298 * 0.02562 * 18 17 16 21 21 C 1.36111 * 125.71374 * 179.97438 * 20 18 17 22 22 C 1.42230 * 107.62843 * 180.02562 * 21 20 18 23 23 C 1.45591 * 140.78057 * 179.97438 * 22 21 20 24 24 C 1.31809 * 114.63487 * 180.02562 * 23 22 21 25 25 S 1.75361 * 111.24347 * 359.97438 * 24 23 22 26 26 C 1.38172 * 106.99400 * 0.02562 * 22 21 20 27 27 N 1.37465 * 108.17007 * 359.97438 * 26 22 21 28 28 H 0.96991 * 125.68644 * 179.73236 * 27 26 22 29 29 C 1.47424 * 108.70182 * 1.28353 * 17 16 15 30 30 H 1.08997 * 109.47031 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47038 * 300.00425 * 1 2 3 32 32 H 1.09002 * 109.46569 * 60.00461 * 1 2 3 33 33 H 0.96998 * 119.99793 * 265.00835 * 4 2 1 34 34 H 0.96995 * 120.00159 * 180.02562 * 8 7 5 35 35 H 1.09006 * 110.72315 * 88.02917 * 15 13 2 36 36 H 1.08996 * 110.87431 * 324.82155 * 15 13 2 37 37 H 1.09001 * 109.88513 * 262.77285 * 16 15 13 38 38 H 1.09007 * 110.01039 * 141.68547 * 16 15 13 39 39 H 1.07998 * 126.18559 * 0.07055 * 21 20 18 40 40 H 1.07999 * 122.68043 * 0.05493 * 23 22 21 41 41 H 1.07998 * 124.38333 * 180.02562 * 24 23 22 42 42 H 1.09000 * 110.36458 * 94.49172 * 29 17 16 43 43 H 1.09005 * 110.36546 * 216.80719 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1493 -0.0077 -2.3757 6 1 1.8920 1.0402 -2.4243 7 6 2.6115 -0.6622 -3.5091 8 7 2.9235 -1.9395 -3.4503 9 14 2.7893 0.2694 -5.1185 10 1 4.1515 0.8545 -5.2039 11 1 2.5784 -0.6621 -6.2556 12 1 1.7793 1.3566 -5.1753 13 6 2.0400 -0.7213 1.2493 14 1 1.7468 -1.7710 1.2389 15 6 1.5425 -0.0177 2.5396 16 6 2.6244 -0.3900 3.5753 17 7 3.8421 -0.7378 2.8286 18 6 5.0089 -1.1384 3.3716 19 8 5.9559 -1.4010 2.6533 20 6 5.1373 -1.2578 4.8259 21 6 6.2556 -1.6504 5.4952 22 6 5.9550 -1.6302 6.8852 23 6 6.5718 -1.8973 8.1767 24 6 5.7820 -1.7024 9.2137 25 16 4.1904 -1.1670 8.7084 26 6 4.6415 -1.2192 7.0084 27 7 4.1435 -0.9918 5.7475 28 1 3.2429 -0.6978 5.5395 29 6 3.5776 -0.5697 1.3881 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 2.2490 -1.6318 -1.1525 34 1 3.2469 -2.3967 -4.2422 35 1 0.5700 -0.4072 2.8409 36 1 1.4975 1.0624 2.4003 37 1 2.2942 -1.2450 4.1652 38 1 2.8210 0.4585 4.2307 39 1 7.2005 -1.9265 5.0511 40 1 7.5950 -2.2282 8.2769 41 1 6.0770 -1.8521 10.2417 42 1 3.8952 0.4190 1.0569 43 1 4.0878 -1.3445 0.8157 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271509792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:07 Heat of formation + Delta-G solvation = 36.660799 kcal Electronic energy + Delta-G solvation = -25649.993294 eV Core-core repulsion = 22015.193641 eV Total energy + Delta-G solvation = -3634.799653 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.55728 -40.81937 -39.09357 -36.95707 -36.28111 -34.33696 -32.19791 -31.66625 -30.47822 -30.03949 -28.90563 -25.99021 -25.51018 -23.93896 -23.07164 -22.70540 -21.31546 -21.11740 -20.37486 -19.49374 -19.01065 -17.88110 -17.53281 -16.77304 -16.64863 -16.10952 -15.91229 -15.58310 -15.49020 -15.35409 -15.12051 -14.71525 -14.50171 -14.28389 -14.11923 -13.80622 -13.58255 -13.45053 -13.16870 -12.94214 -12.81148 -12.66212 -12.63136 -12.42220 -12.21288 -12.04401 -11.83170 -11.76660 -11.58194 -11.48007 -11.34270 -10.94324 -10.60894 -9.92407 -9.31004 -8.99368 -8.65149 -7.92947 -5.20400 0.06595 0.12827 0.41200 1.06239 1.45729 1.47600 1.55201 1.64434 1.76053 2.11212 2.24201 2.56187 3.21440 3.41003 3.46891 3.60572 3.77418 3.79724 3.98874 4.04963 4.12747 4.20478 4.38323 4.46548 4.53088 4.61330 4.61864 4.75488 4.77651 4.83024 4.86570 4.94911 5.08215 5.12551 5.15329 5.20419 5.28104 5.39503 5.41188 5.53612 5.61627 5.64495 6.10048 6.26806 6.29462 6.83107 7.35273 8.13113 8.33544 9.30714 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025389 B = 0.002342 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.582049 B =11950.352743 C =12822.163318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.179 3.821 3 H 0.048 0.952 4 N -0.738 5.738 5 C -0.230 4.230 6 H 0.077 0.923 7 C -0.080 4.080 8 N -0.971 5.971 9 Si 0.967 3.033 10 H -0.292 1.292 11 H -0.299 1.299 12 H -0.267 1.267 13 C -0.092 4.092 14 H 0.077 0.923 15 C -0.108 4.108 16 C 0.080 3.920 17 N -0.615 5.615 18 C 0.593 3.407 19 O -0.573 6.573 20 C -0.015 4.015 21 C -0.083 4.083 22 C -0.182 4.182 23 C -0.088 4.088 24 C -0.211 4.211 25 S 0.167 5.833 26 C -0.023 4.023 27 N -0.518 5.518 28 H 0.432 0.568 29 C 0.124 3.876 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.033 0.967 33 H 0.370 0.630 34 H 0.248 0.752 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.152 0.848 40 H 0.162 0.838 41 H 0.203 0.797 42 H 0.062 0.938 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.962 3.703 31.406 31.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.071 3.929 3 H 0.066 0.934 4 N -0.378 5.378 5 C -0.362 4.362 6 H 0.095 0.905 7 C -0.272 4.272 8 N -0.623 5.623 9 Si 0.797 3.203 10 H -0.220 1.220 11 H -0.225 1.225 12 H -0.191 1.191 13 C -0.112 4.112 14 H 0.095 0.905 15 C -0.146 4.146 16 C -0.041 4.041 17 N -0.347 5.347 18 C 0.383 3.617 19 O -0.453 6.453 20 C -0.129 4.129 21 C -0.111 4.111 22 C -0.195 4.195 23 C -0.118 4.118 24 C -0.344 4.344 25 S 0.420 5.580 26 C -0.252 4.252 27 N -0.128 5.128 28 H 0.278 0.722 29 C 0.001 3.999 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.052 0.948 33 H 0.201 0.799 34 H 0.057 0.943 35 H 0.136 0.864 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.169 0.831 40 H 0.180 0.820 41 H 0.220 0.780 42 H 0.080 0.920 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.856 4.136 31.604 32.002 hybrid contribution 1.520 -0.530 -2.639 3.091 sum -1.335 3.606 28.966 29.220 Atomic orbital electron populations 1.22284 0.96765 1.01014 1.01233 1.20418 0.93319 0.94760 0.84445 0.93422 1.42660 1.78490 1.10237 1.06416 1.19587 1.34284 0.94105 0.88233 0.90498 1.25518 1.03407 0.96826 1.01451 1.69815 1.52955 1.10240 1.29260 0.85225 0.77743 0.77535 0.79808 1.21954 1.22542 1.19129 1.22533 0.91976 1.00777 0.95912 0.90470 1.22712 0.98443 1.02426 0.90991 1.22591 0.84220 1.01147 0.96169 1.48524 1.11759 1.65636 1.08757 1.16988 0.81715 0.76970 0.86017 1.90869 1.39418 1.52799 1.62175 1.19597 0.91010 1.14401 0.87851 1.20899 0.97860 1.01274 0.91075 1.19714 0.93879 1.11599 0.94285 1.20538 1.01780 1.01402 0.88088 1.25334 0.95857 1.09101 1.04114 1.83853 1.13659 1.73077 0.87380 1.24118 0.98288 1.09795 0.92972 1.42010 1.13486 1.55316 1.01992 0.72211 1.22146 0.97248 1.00687 0.79801 0.93944 0.89817 0.94800 0.79884 0.94313 0.86361 0.88464 0.89431 0.88886 0.83054 0.82025 0.77978 0.91980 0.93800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 9.27 71.98 0.67 -3.96 16 2 C 0.18 6.30 2.43 45.00 0.11 6.41 16 3 H 0.05 1.71 8.01 -2.39 -0.02 1.69 16 4 N -0.74 -36.01 4.97 -322.93 -1.61 -37.62 16 5 C -0.23 -12.59 9.93 84.03 0.83 -11.75 16 6 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 7 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 8 N -0.97 -60.74 13.06 21.65 0.28 -60.45 16 9 Si 0.97 46.92 29.55 68.60 2.03 48.95 16 10 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 11 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 13 C -0.09 -2.62 2.67 -9.32 -0.02 -2.65 16 14 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 15 C -0.11 -1.80 5.28 31.78 0.17 -1.64 16 16 C 0.08 1.36 5.10 86.73 0.44 1.80 16 17 N -0.61 -17.43 3.32 -816.24 -2.71 -20.15 16 18 C 0.59 19.57 7.81 86.39 0.68 20.24 16 19 O -0.57 -24.35 17.10 -4.41 -0.08 -24.43 16 20 C -0.02 -0.41 6.82 39.81 0.27 -0.14 16 21 C -0.08 -2.15 10.58 22.77 0.24 -1.91 16 22 C -0.18 -3.92 6.80 -20.41 -0.14 -4.06 16 23 C -0.09 -1.32 10.42 23.39 0.24 -1.08 16 24 C -0.21 -2.27 11.03 67.05 0.74 -1.53 16 25 S 0.17 2.04 23.24 -56.49 -1.31 0.73 16 26 C -0.02 -0.43 8.41 83.79 0.70 0.28 16 27 N -0.52 -10.04 5.69 -179.04 -1.02 -11.06 16 28 H 0.43 5.86 4.83 -92.71 -0.45 5.41 16 29 C 0.12 4.24 6.24 86.93 0.54 4.78 16 30 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.77 7.27 -2.39 -0.02 1.75 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.37 19.91 7.80 -92.71 -0.72 19.19 16 34 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.12 1.32 8.11 -2.38 -0.02 1.30 16 36 H 0.10 1.43 8.04 -2.39 -0.02 1.41 16 37 H 0.09 1.14 7.06 -2.39 -0.02 1.12 16 38 H 0.09 1.13 7.21 -2.38 -0.02 1.11 16 39 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 40 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 41 H 0.20 0.79 8.06 -2.91 -0.02 0.77 16 42 H 0.06 2.25 7.99 -2.39 -0.02 2.23 16 43 H 0.04 1.88 8.03 -2.38 -0.02 1.86 16 Total: -1.00 -76.96 365.66 1.41 -75.55 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: -0.12 Total: 27.87 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 5.94 Total: 0.61 kcal Atomic # 7 Polarization: -124.22 SS G_CDS: -5.06 Total: -129.28 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.08 Total: -24.43 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.31 Total: 0.73 kcal Total: -76.96 1.41 -75.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271509792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.214 kcal (2) G-P(sol) polarization free energy of solvation -76.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds