Wall clock time and date at job start Tue Mar 31 2020 18:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 5 5 C 1.36939 * 119.99933 * 85.27615 * 4 2 1 6 6 H 1.08001 * 119.99700 * 359.72658 * 5 4 2 7 7 C 1.38810 * 120.00095 * 179.71972 * 5 4 2 8 8 N 1.31624 * 119.99740 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00044 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47144 * 90.00258 * 9 7 5 11 11 H 1.48500 * 109.47140 * 210.00775 * 9 7 5 12 12 H 1.48502 * 109.46967 * 330.00206 * 9 7 5 13 13 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 14 14 H 1.09002 * 110.88658 * 179.29983 * 13 2 1 15 15 C 1.55158 * 111.00472 * 303.18111 * 13 2 1 16 16 C 1.54375 * 102.91753 * 153.54740 * 15 13 2 17 17 N 1.47016 * 107.29048 * 337.85829 * 16 15 13 18 18 C 1.34773 * 125.64963 * 178.86929 * 17 16 15 19 19 O 1.21723 * 120.00339 * 180.02562 * 18 17 16 20 20 C 1.46499 * 119.99843 * 0.04843 * 18 17 16 21 21 C 1.36110 * 125.70848 * 179.97438 * 20 18 17 22 22 C 1.42229 * 107.62452 * 179.97438 * 21 20 18 23 23 C 1.45591 * 140.78066 * 179.97438 * 22 21 20 24 24 C 1.31802 * 114.63592 * 180.02562 * 23 22 21 25 25 S 1.75354 * 111.24480 * 359.97438 * 24 23 22 26 26 C 1.38170 * 106.99574 * 359.97438 * 22 21 20 27 27 N 1.37467 * 108.16448 * 359.77600 * 26 22 21 28 28 H 0.97003 * 125.68115 * 180.22140 * 27 26 22 29 29 C 1.47425 * 108.70179 * 358.91197 * 17 16 15 30 30 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 32 32 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 33 33 H 0.97001 * 119.99790 * 264.99588 * 4 2 1 34 34 H 0.96998 * 119.99409 * 179.97438 * 8 7 5 35 35 H 1.09001 * 110.72222 * 271.93731 * 15 13 2 36 36 H 1.08993 * 110.72141 * 35.21676 * 15 13 2 37 37 H 1.08997 * 109.89920 * 218.42420 * 16 15 13 38 38 H 1.08995 * 109.97465 * 97.34680 * 16 15 13 39 39 H 1.08000 * 126.19016 * 359.96393 * 21 20 18 40 40 H 1.08004 * 122.68298 * 0.04094 * 23 22 21 41 41 H 1.08002 * 124.38250 * 179.97438 * 24 23 22 42 42 H 1.08998 * 110.36780 * 265.28479 * 29 17 16 43 43 H 1.09005 * 110.45907 * 143.01153 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1545 -0.0062 -2.3743 6 1 1.8977 1.0417 -2.4228 7 6 2.6228 -0.6591 -3.5062 8 7 2.9355 -1.9363 -3.4471 9 14 2.8079 0.2744 -5.1136 10 1 4.1701 0.8604 -5.1916 11 1 2.6031 -0.6560 -6.2527 12 1 1.7974 1.3609 -5.1741 13 6 2.0399 -0.7212 1.2493 14 1 3.1296 -0.7455 1.2665 15 6 1.4779 -0.0655 2.5383 16 6 1.4923 -1.2296 3.5522 17 7 1.4917 -2.4810 2.7806 18 6 1.5239 -3.7242 3.3001 19 8 1.5203 -4.6925 2.5625 20 6 1.5626 -3.9102 4.7528 21 6 1.5967 -5.1072 5.3998 22 6 1.6278 -4.8409 6.7966 23 6 1.6699 -5.5340 8.0763 24 6 1.6843 -4.7421 9.1298 25 16 1.6482 -3.0540 8.6563 26 6 1.6117 -3.4675 6.9464 27 7 1.5773 -2.9002 5.6947 28 1 1.5630 -1.9491 5.5047 29 6 1.4512 -2.1508 1.3444 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6318 -1.1525 34 1 3.2623 -2.3926 -4.2382 35 1 2.1251 0.7455 2.8722 36 1 0.4611 0.2925 2.3771 37 1 0.6049 -1.1829 4.1833 38 1 2.3891 -1.1749 4.1692 39 1 1.5994 -6.0827 4.9364 40 1 1.6881 -6.6109 8.1559 41 1 1.7144 -5.0880 10.1524 42 1 0.4235 -2.1628 0.9812 43 1 2.0621 -2.8513 0.7750 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271509793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:13 Heat of formation + Delta-G solvation = 63.427363 kcal Electronic energy + Delta-G solvation = -25733.910701 eV Core-core repulsion = 22100.271733 eV Total energy + Delta-G solvation = -3633.638968 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -41.65595 -39.79658 -37.89996 -35.73638 -35.18534 -32.61669 -30.81070 -30.68280 -29.38581 -28.57975 -27.53745 -24.89284 -24.06586 -23.20119 -22.04347 -21.91368 -20.38372 -19.59399 -18.92949 -18.51830 -17.29049 -16.86554 -16.34635 -15.62402 -15.37141 -15.15845 -14.84286 -14.66720 -14.31085 -14.03358 -13.83611 -13.58948 -13.33334 -13.20559 -12.96048 -12.73204 -12.32212 -12.21696 -12.10027 -11.92178 -11.71568 -11.17862 -11.13123 -11.03306 -10.88278 -10.63704 -10.43357 -10.31164 -10.17208 -9.92337 -9.75963 -9.65764 -8.95048 -8.72074 -8.55428 -7.93759 -7.00232 -5.77891 -3.07907 0.77721 1.04674 1.16868 1.68200 2.63205 2.72151 2.95482 3.26739 3.42216 3.47148 3.49378 4.17251 4.39894 4.49620 4.52634 4.67928 4.70327 4.80969 5.03923 5.15853 5.20595 5.32393 5.46894 5.49852 5.54480 5.65731 5.68263 5.78802 5.81974 5.88361 5.97011 6.07510 6.11315 6.13384 6.22325 6.36580 6.45774 6.47135 6.61488 6.76186 6.86787 7.04394 7.37372 7.67730 8.01672 8.39820 9.51071 10.07235 10.41434 11.44385 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.029484 B = 0.002269 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.431289 B =12335.069606 C =12969.444182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.185 3.815 3 H 0.053 0.947 4 N -0.724 5.724 5 C -0.241 4.241 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.930 5.930 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.086 0.914 15 C -0.128 4.128 16 C 0.087 3.913 17 N -0.615 5.615 18 C 0.598 3.402 19 O -0.517 6.517 20 C 0.001 3.999 21 C -0.071 4.071 22 C -0.163 4.163 23 C -0.068 4.068 24 C -0.223 4.223 25 S 0.128 5.872 26 C -0.014 4.014 27 N -0.529 5.529 28 H 0.421 0.579 29 C 0.109 3.891 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.055 0.945 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.158 0.842 40 H 0.145 0.855 41 H 0.170 0.830 42 H 0.082 0.918 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.880 -0.656 27.446 27.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.075 3.925 3 H 0.071 0.929 4 N -0.366 5.366 5 C -0.373 4.373 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.578 5.578 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.104 0.896 15 C -0.166 4.166 16 C -0.036 4.036 17 N -0.349 5.349 18 C 0.386 3.614 19 O -0.393 6.393 20 C -0.113 4.113 21 C -0.099 4.099 22 C -0.175 4.175 23 C -0.098 4.098 24 C -0.357 4.357 25 S 0.381 5.619 26 C -0.243 4.243 27 N -0.137 5.137 28 H 0.266 0.734 29 C -0.012 4.012 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.176 0.824 40 H 0.163 0.837 41 H 0.187 0.813 42 H 0.100 0.900 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.871 0.316 27.597 27.869 hybrid contribution 0.194 -0.637 -1.656 1.785 sum -3.677 -0.321 25.941 26.202 Atomic orbital electron populations 1.22633 0.99431 1.01091 1.00075 1.20066 0.91868 0.95327 0.85274 0.92910 1.42434 1.78151 1.10683 1.05319 1.19207 1.36747 0.93863 0.87442 0.91161 1.24758 1.02037 0.95967 0.98110 1.69664 1.50465 1.08631 1.29050 0.86207 0.77744 0.78587 0.83718 1.21754 1.21786 1.20802 1.22729 1.00801 0.93665 0.95012 0.89575 1.22825 1.03383 0.96038 0.94393 1.22249 1.00191 0.85435 0.95754 1.48472 1.72843 1.04396 1.09145 1.16594 0.77401 0.82223 0.85182 1.90911 1.50370 1.38652 1.59355 1.20071 1.14661 0.87778 0.88741 1.20748 1.01925 0.97231 0.89948 1.19398 1.13183 0.90862 0.94104 1.20346 0.99997 1.00504 0.88982 1.24852 1.13031 0.94991 1.02819 1.83892 1.81039 1.06698 0.90272 1.23621 1.12358 0.96359 0.91957 1.42198 1.60269 1.08958 1.02280 0.73449 1.22551 1.02593 0.96839 0.79197 0.93045 0.94184 0.92592 0.78147 0.93426 0.89736 0.89269 0.91665 0.91736 0.82440 0.83699 0.81255 0.90027 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 8.85 37.16 0.33 -2.51 16 2 C 0.19 3.34 2.84 -67.93 -0.19 3.15 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 N -0.72 -17.34 5.07 -53.43 -0.27 -17.61 16 5 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 6 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.02 13.06 55.49 0.72 -27.29 16 9 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C -0.10 -1.51 3.07 -88.47 -0.27 -1.78 16 14 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 15 C -0.13 -1.33 6.31 -24.87 -0.16 -1.48 16 16 C 0.09 0.86 5.10 -3.04 -0.02 0.85 16 17 N -0.61 -8.57 3.33 -172.10 -0.57 -9.14 16 18 C 0.60 9.32 7.81 -12.93 -0.10 9.22 16 19 O -0.52 -9.98 17.11 5.17 0.09 -9.89 16 20 C 0.00 0.01 6.82 -82.47 -0.56 -0.55 16 21 C -0.07 -0.89 10.58 -38.81 -0.41 -1.30 16 22 C -0.16 -1.84 6.80 -105.46 -0.72 -2.55 16 23 C -0.07 -0.58 10.42 -38.54 -0.40 -0.98 16 24 C -0.22 -1.61 11.03 28.84 0.32 -1.29 16 25 S 0.13 1.01 23.24 -107.50 -2.50 -1.49 16 26 C -0.01 -0.15 8.41 -15.05 -0.13 -0.28 16 27 N -0.53 -5.58 5.69 -7.94 -0.05 -5.62 16 28 H 0.42 3.48 4.83 -40.82 -0.20 3.29 16 29 C 0.11 1.75 5.68 -2.53 -0.01 1.73 16 30 H 0.05 0.87 6.04 -51.93 -0.31 0.56 16 31 H 0.04 0.52 6.07 -51.93 -0.32 0.21 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.38 9.93 7.06 -40.82 -0.29 9.65 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.88 5.74 -51.93 -0.30 0.58 16 37 H 0.07 0.52 7.23 -51.93 -0.38 0.15 16 38 H 0.06 0.54 7.03 -51.93 -0.37 0.18 16 39 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.15 0.93 8.06 -52.48 -0.42 0.50 16 41 H 0.17 0.74 8.06 -52.49 -0.42 0.31 16 42 H 0.08 1.35 5.66 -51.93 -0.29 1.06 16 43 H 0.09 1.64 7.79 -51.93 -0.40 1.23 16 LS Contribution 357.81 15.07 5.39 5.39 Total: -1.00 -32.98 357.81 -10.13 -43.11 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -5.35 Total: 10.26 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -2.57 Total: -4.89 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.16 Total: -59.67 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.50 Total: -1.49 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.98 -10.13 -43.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271509793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.541 kcal (2) G-P(sol) polarization free energy of solvation -32.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds