Wall clock time and date at job start Tue Mar 31 2020 18:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 5 5 C 1.36939 * 119.99933 * 85.27615 * 4 2 1 6 6 H 1.08001 * 119.99700 * 359.72658 * 5 4 2 7 7 C 1.38810 * 120.00095 * 179.71972 * 5 4 2 8 8 N 1.31624 * 119.99740 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00044 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47144 * 90.00258 * 9 7 5 11 11 H 1.48500 * 109.47140 * 210.00775 * 9 7 5 12 12 H 1.48502 * 109.46967 * 330.00206 * 9 7 5 13 13 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 14 14 H 1.09002 * 110.88658 * 179.29983 * 13 2 1 15 15 C 1.55158 * 111.00472 * 303.18111 * 13 2 1 16 16 C 1.54375 * 102.91753 * 153.54740 * 15 13 2 17 17 N 1.47016 * 107.29048 * 337.85829 * 16 15 13 18 18 C 1.34773 * 125.64963 * 178.86929 * 17 16 15 19 19 O 1.21723 * 120.00339 * 180.02562 * 18 17 16 20 20 C 1.46499 * 119.99843 * 0.04843 * 18 17 16 21 21 C 1.36110 * 125.70848 * 179.97438 * 20 18 17 22 22 C 1.42229 * 107.62452 * 179.97438 * 21 20 18 23 23 C 1.45591 * 140.78066 * 179.97438 * 22 21 20 24 24 C 1.31802 * 114.63592 * 180.02562 * 23 22 21 25 25 S 1.75354 * 111.24480 * 359.97438 * 24 23 22 26 26 C 1.38170 * 106.99574 * 359.97438 * 22 21 20 27 27 N 1.37467 * 108.16448 * 359.77600 * 26 22 21 28 28 H 0.97003 * 125.68115 * 180.22140 * 27 26 22 29 29 C 1.47425 * 108.70179 * 358.91197 * 17 16 15 30 30 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 32 32 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 33 33 H 0.97001 * 119.99790 * 264.99588 * 4 2 1 34 34 H 0.96998 * 119.99409 * 179.97438 * 8 7 5 35 35 H 1.09001 * 110.72222 * 271.93731 * 15 13 2 36 36 H 1.08993 * 110.72141 * 35.21676 * 15 13 2 37 37 H 1.08997 * 109.89920 * 218.42420 * 16 15 13 38 38 H 1.08995 * 109.97465 * 97.34680 * 16 15 13 39 39 H 1.08000 * 126.19016 * 359.96393 * 21 20 18 40 40 H 1.08004 * 122.68298 * 0.04094 * 23 22 21 41 41 H 1.08002 * 124.38250 * 179.97438 * 24 23 22 42 42 H 1.08998 * 110.36780 * 265.28479 * 29 17 16 43 43 H 1.09005 * 110.45907 * 143.01153 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1545 -0.0062 -2.3743 6 1 1.8977 1.0417 -2.4228 7 6 2.6228 -0.6591 -3.5062 8 7 2.9355 -1.9363 -3.4471 9 14 2.8079 0.2744 -5.1136 10 1 4.1701 0.8604 -5.1916 11 1 2.6031 -0.6560 -6.2527 12 1 1.7974 1.3609 -5.1741 13 6 2.0399 -0.7212 1.2493 14 1 3.1296 -0.7455 1.2665 15 6 1.4779 -0.0655 2.5383 16 6 1.4923 -1.2296 3.5522 17 7 1.4917 -2.4810 2.7806 18 6 1.5239 -3.7242 3.3001 19 8 1.5203 -4.6925 2.5625 20 6 1.5626 -3.9102 4.7528 21 6 1.5967 -5.1072 5.3998 22 6 1.6278 -4.8409 6.7966 23 6 1.6699 -5.5340 8.0763 24 6 1.6843 -4.7421 9.1298 25 16 1.6482 -3.0540 8.6563 26 6 1.6117 -3.4675 6.9464 27 7 1.5773 -2.9002 5.6947 28 1 1.5630 -1.9491 5.5047 29 6 1.4512 -2.1508 1.3444 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6318 -1.1525 34 1 3.2623 -2.3926 -4.2382 35 1 2.1251 0.7455 2.8722 36 1 0.4611 0.2925 2.3771 37 1 0.6049 -1.1829 4.1833 38 1 2.3891 -1.1749 4.1692 39 1 1.5994 -6.0827 4.9364 40 1 1.6881 -6.6109 8.1559 41 1 1.7144 -5.0880 10.1524 42 1 0.4235 -2.1628 0.9812 43 1 2.0621 -2.8513 0.7750 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271509793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:12 Heat of formation + Delta-G solvation = 41.913875 kcal Electronic energy + Delta-G solvation = -25734.843596 eV Core-core repulsion = 22100.271733 eV Total energy + Delta-G solvation = -3634.571863 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.56320 -40.89804 -39.18223 -36.92250 -36.26862 -34.36337 -32.19540 -31.66126 -30.45840 -29.99528 -28.67981 -26.28496 -25.63801 -24.02719 -23.22586 -22.96377 -21.31517 -20.39707 -20.30750 -19.57866 -19.01873 -17.87620 -17.63667 -16.74159 -16.63663 -16.20230 -15.98159 -15.52522 -15.42277 -15.37746 -15.15613 -14.94894 -14.60448 -14.34441 -14.13205 -13.75000 -13.59707 -13.56115 -13.16018 -12.85485 -12.78333 -12.68386 -12.62387 -12.27453 -12.19392 -12.15934 -11.76621 -11.67409 -11.57511 -11.45460 -11.35739 -10.92221 -10.60458 -9.88270 -9.30844 -9.01090 -8.65018 -7.92851 -5.21537 0.06750 0.13189 0.41340 1.06346 1.46661 1.48280 1.56553 1.64468 1.76333 2.11346 2.24503 2.56319 3.21006 3.40722 3.45703 3.57467 3.77731 3.84436 3.98940 4.06285 4.12054 4.19503 4.37731 4.39138 4.45037 4.61318 4.61740 4.67924 4.75655 4.83235 4.88223 4.96524 5.01520 5.14841 5.16366 5.21630 5.28606 5.36650 5.41381 5.54161 5.61867 5.66182 6.10079 6.26702 6.29063 6.83359 7.34577 8.12328 8.32856 9.30806 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.029484 B = 0.002269 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.431289 B =12335.069606 C =12969.444182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.179 3.821 3 H 0.059 0.941 4 N -0.740 5.740 5 C -0.233 4.233 6 H 0.081 0.919 7 C -0.082 4.082 8 N -0.973 5.973 9 Si 0.971 3.029 10 H -0.288 1.288 11 H -0.301 1.301 12 H -0.267 1.267 13 C -0.094 4.094 14 H 0.073 0.927 15 C -0.113 4.113 16 C 0.081 3.919 17 N -0.613 5.613 18 C 0.593 3.407 19 O -0.572 6.572 20 C -0.015 4.015 21 C -0.082 4.082 22 C -0.182 4.182 23 C -0.088 4.088 24 C -0.211 4.211 25 S 0.166 5.834 26 C -0.023 4.023 27 N -0.518 5.518 28 H 0.431 0.569 29 C 0.113 3.887 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.036 0.964 33 H 0.370 0.630 34 H 0.248 0.752 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.152 0.848 40 H 0.162 0.838 41 H 0.203 0.797 42 H 0.075 0.925 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.571 1.917 31.200 31.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.071 3.929 3 H 0.077 0.923 4 N -0.380 5.380 5 C -0.364 4.364 6 H 0.098 0.902 7 C -0.274 4.274 8 N -0.625 5.625 9 Si 0.801 3.199 10 H -0.215 1.215 11 H -0.228 1.228 12 H -0.192 1.192 13 C -0.115 4.115 14 H 0.091 0.909 15 C -0.151 4.151 16 C -0.041 4.041 17 N -0.345 5.345 18 C 0.383 3.617 19 O -0.452 6.452 20 C -0.129 4.129 21 C -0.111 4.111 22 C -0.195 4.195 23 C -0.118 4.118 24 C -0.344 4.344 25 S 0.420 5.580 26 C -0.252 4.252 27 N -0.128 5.128 28 H 0.278 0.722 29 C -0.009 4.009 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.201 0.799 34 H 0.057 0.943 35 H 0.134 0.866 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.170 0.830 40 H 0.180 0.820 41 H 0.220 0.780 42 H 0.093 0.907 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.589 2.993 31.416 31.890 hybrid contribution 0.385 -1.416 -2.617 3.000 sum -4.204 1.577 28.799 29.147 Atomic orbital electron populations 1.22483 0.97676 1.00741 1.01295 1.20342 0.92894 0.95295 0.84406 0.92257 1.42718 1.78442 1.10249 1.06623 1.19650 1.34183 0.94254 0.88362 0.90151 1.25580 1.03341 0.96831 1.01637 1.69845 1.52827 1.10405 1.29389 0.85163 0.77901 0.77399 0.79456 1.21510 1.22814 1.19161 1.22513 0.99988 0.92907 0.96044 0.90899 1.22842 1.04445 0.96532 0.91260 1.22576 1.02706 0.83014 0.95760 1.48491 1.71934 1.05471 1.08610 1.16977 0.76589 0.81995 0.86123 1.90869 1.53033 1.40413 1.60835 1.19607 1.16848 0.88818 0.87601 1.20899 1.01865 0.97127 0.91198 1.19718 1.13605 0.91931 0.94237 1.20537 1.01415 1.01727 0.88110 1.25331 1.10531 0.94553 1.04003 1.83856 1.80081 1.06800 0.87307 1.24116 1.11397 0.96521 0.93168 1.42014 1.60023 1.08936 1.01845 0.72224 1.22311 1.01321 0.96876 0.80362 0.94212 0.89741 0.94528 0.79879 0.94296 0.86618 0.87894 0.88748 0.89595 0.83015 0.82016 0.77988 0.90716 0.93828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.12 8.85 71.98 0.64 -4.48 16 2 C 0.18 6.34 2.84 44.99 0.13 6.46 16 3 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 4 N -0.74 -36.40 5.07 -322.94 -1.64 -38.04 16 5 C -0.23 -12.68 9.93 84.03 0.83 -11.84 16 6 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 7 C -0.08 -4.75 5.50 84.86 0.47 -4.29 16 8 N -0.97 -61.15 13.06 21.65 0.28 -60.87 16 9 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 10 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 11 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 13 C -0.09 -2.73 3.07 -9.40 -0.03 -2.76 16 14 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 15 C -0.11 -1.92 6.31 31.80 0.20 -1.72 16 16 C 0.08 1.37 5.10 86.75 0.44 1.81 16 17 N -0.61 -17.14 3.33 -816.60 -2.72 -19.86 16 18 C 0.59 19.31 7.81 86.40 0.68 19.99 16 19 O -0.57 -23.92 17.11 -4.42 -0.08 -24.00 16 20 C -0.02 -0.41 6.82 39.81 0.27 -0.14 16 21 C -0.08 -2.13 10.58 22.77 0.24 -1.89 16 22 C -0.18 -3.91 6.80 -20.41 -0.14 -4.05 16 23 C -0.09 -1.32 10.42 23.40 0.24 -1.07 16 24 C -0.21 -2.27 11.03 67.05 0.74 -1.53 16 25 S 0.17 2.03 23.24 -56.49 -1.31 0.72 16 26 C -0.02 -0.43 8.41 83.79 0.70 0.27 16 27 N -0.52 -10.00 5.69 -179.05 -1.02 -11.02 16 28 H 0.43 5.86 4.83 -92.71 -0.45 5.41 16 29 C 0.11 3.80 5.68 86.85 0.49 4.29 16 30 H 0.04 1.34 6.04 -2.39 -0.01 1.33 16 31 H 0.08 1.90 6.07 -2.39 -0.01 1.89 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.37 20.20 7.06 -92.71 -0.65 19.54 16 34 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.10 1.51 5.74 -2.39 -0.01 1.50 16 37 H 0.09 1.13 7.23 -2.39 -0.02 1.11 16 38 H 0.09 1.14 7.03 -2.39 -0.02 1.12 16 39 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 40 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 41 H 0.20 0.79 8.06 -2.91 -0.02 0.77 16 42 H 0.07 2.58 5.66 -2.39 -0.01 2.57 16 43 H 0.04 1.81 7.79 -2.38 -0.02 1.80 16 Total: -1.00 -76.86 357.81 1.43 -75.43 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: -0.03 Total: 30.03 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 5.91 Total: -0.94 kcal Atomic # 7 Polarization: -124.69 SS G_CDS: -5.09 Total: -129.78 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.08 Total: -24.00 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -1.31 Total: 0.72 kcal Total: -76.86 1.43 -75.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271509793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.344 kcal (2) G-P(sol) polarization free energy of solvation -76.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds