Wall clock time and date at job start Tue Mar 31 2020 18:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09010 * 109.46949 * 2 1 4 4 N 1.46493 * 109.47247 * 120.00448 * 2 1 3 5 5 C 1.36942 * 119.99871 * 275.00318 * 4 2 1 6 6 H 1.08003 * 119.99997 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99841 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99814 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00333 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47063 * 89.99558 * 9 7 5 11 11 H 1.48491 * 109.47185 * 210.00050 * 9 7 5 12 12 H 1.48511 * 109.46720 * 329.99842 * 9 7 5 13 13 C 1.53003 * 109.47187 * 240.00659 * 2 1 3 14 14 H 1.08998 * 110.88290 * 302.42510 * 13 2 1 15 15 C 1.55157 * 111.00557 * 66.34745 * 13 2 1 16 16 C 1.54336 * 103.01759 * 153.37912 * 15 13 2 17 17 N 1.47019 * 107.26643 * 338.13991 * 16 15 13 18 18 C 1.34774 * 125.64405 * 178.84721 * 17 16 15 19 19 O 1.21728 * 120.00021 * 179.69270 * 18 17 16 20 20 C 1.46493 * 120.00495 * 359.69607 * 18 17 16 21 21 C 1.36112 * 125.71620 * 180.02562 * 20 18 17 22 22 C 1.42228 * 107.63027 * 179.97438 * 21 20 18 23 23 C 1.45589 * 140.78311 * 179.97438 * 22 21 20 24 24 C 1.31815 * 114.63548 * 180.02562 * 23 22 21 25 25 S 1.75354 * 111.24278 * 359.97438 * 24 23 22 26 26 C 1.38179 * 106.99388 * 359.75929 * 22 21 20 27 27 N 1.37464 * 108.16741 * 0.38901 * 26 22 21 28 28 H 0.97001 * 125.68708 * 179.87706 * 27 26 22 29 29 C 1.47419 * 108.70491 * 358.58790 * 17 16 15 30 30 H 1.08992 * 109.47171 * 299.99861 * 1 2 3 31 31 H 1.09001 * 109.46864 * 59.99507 * 1 2 3 32 32 H 1.09000 * 109.46486 * 179.97438 * 1 2 3 33 33 H 0.96996 * 120.00122 * 95.00254 * 4 2 1 34 34 H 0.96996 * 120.00155 * 180.02562 * 8 7 5 35 35 H 1.08998 * 110.72178 * 271.94211 * 15 13 2 36 36 H 1.08999 * 110.71791 * 35.03850 * 15 13 2 37 37 H 1.08999 * 109.99067 * 218.65996 * 16 15 13 38 38 H 1.09006 * 109.77338 * 97.50120 * 16 15 13 39 39 H 1.07997 * 126.18446 * 359.95712 * 21 20 18 40 40 H 1.08000 * 122.67800 * 0.02562 * 23 22 21 41 41 H 1.07999 * 124.37488 * 179.97438 * 24 23 22 42 42 H 1.08998 * 110.37053 * 143.19472 * 29 17 16 43 43 H 1.09009 * 110.36452 * 265.40375 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1491 -0.0076 2.3757 6 1 1.8926 1.0404 2.4242 7 6 2.6113 -0.6622 3.5092 8 7 2.7375 -0.0055 4.6429 9 14 3.0557 -2.4746 3.4252 10 1 4.4886 -2.6166 3.0619 11 1 2.8156 -3.1049 4.7481 12 1 2.2161 -3.1430 2.3987 13 6 2.0401 -0.7211 -1.2493 14 1 1.6548 -1.7397 -1.2945 15 6 1.6776 0.0690 -2.5345 16 6 2.7789 -0.3585 -3.5277 17 7 3.9165 -0.8461 -2.7344 18 6 5.0708 -1.3318 -3.2327 19 8 5.9507 -1.7037 -2.4782 20 6 5.2666 -1.4120 -4.6822 21 6 6.3803 -1.8808 -5.3088 22 6 6.1583 -1.7855 -6.7104 23 6 6.8183 -2.0618 -7.9783 24 6 6.1063 -1.7599 -9.0457 25 16 4.5427 -1.1021 -8.6012 26 6 4.8931 -1.2578 -6.8839 27 7 4.3518 -1.0250 -5.6420 28 1 3.4722 -0.6547 -5.4685 29 6 3.5882 -0.7101 -1.3037 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 2.2491 -1.6318 1.1524 34 1 3.0608 -0.4628 5.4348 35 1 0.6921 -0.2199 -2.8998 36 1 1.7200 1.1428 -2.3519 37 1 3.0869 0.4945 -4.1323 38 1 2.4062 -1.1560 -4.1707 39 1 7.2715 -2.2570 -4.8285 40 1 7.8119 -2.4807 -8.0394 41 1 6.4424 -1.8996 -10.0625 42 1 3.9935 -1.5502 -0.7398 43 1 3.9765 0.2307 -0.9131 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271509794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:19 Heat of formation + Delta-G solvation = 61.674587 kcal Electronic energy + Delta-G solvation = -25765.935401 eV Core-core repulsion = 22132.220427 eV Total energy + Delta-G solvation = -3633.714974 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -41.70197 -39.80838 -37.91634 -35.80400 -35.37255 -32.58527 -30.97443 -30.82041 -29.53305 -28.98520 -27.98260 -24.60048 -23.89433 -23.18889 -21.97046 -21.44311 -20.42443 -19.96418 -19.62906 -18.56141 -17.61728 -16.94209 -16.31476 -15.73935 -15.41579 -15.16377 -14.86375 -14.75712 -14.28797 -14.17489 -13.90196 -13.62870 -13.32022 -13.02153 -12.90363 -12.67714 -12.46525 -12.31242 -12.18910 -11.96689 -11.89351 -11.77646 -11.16755 -11.07723 -10.95139 -10.73886 -10.68272 -10.36238 -10.20585 -10.00626 -9.80520 -9.59998 -8.96594 -8.84309 -8.60101 -7.98172 -7.31185 -5.78564 -3.14945 0.73664 1.00365 1.11815 1.64474 2.58561 2.65567 2.89685 3.20827 3.38228 3.41833 3.47336 4.10583 4.31372 4.45791 4.53085 4.58770 4.62854 4.73202 4.93871 5.05669 5.11435 5.26532 5.34799 5.43122 5.48309 5.55739 5.63378 5.68566 5.78192 5.79657 5.85237 5.97539 6.04755 6.07877 6.17254 6.21813 6.30198 6.38103 6.42060 6.69493 6.81892 6.91409 7.29623 7.94641 7.95868 8.40055 9.17762 9.90548 10.09033 11.39579 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022598 B = 0.002557 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.763552 B =10949.110536 C =11883.449545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.190 3.810 3 H 0.059 0.941 4 N -0.748 5.748 5 C -0.244 4.244 6 H 0.090 0.910 7 C 0.007 3.993 8 N -0.933 5.933 9 Si 0.881 3.119 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.278 1.278 13 C -0.106 4.106 14 H 0.082 0.918 15 C -0.120 4.120 16 C 0.086 3.914 17 N -0.617 5.617 18 C 0.598 3.402 19 O -0.518 6.518 20 C 0.000 4.000 21 C -0.070 4.070 22 C -0.162 4.162 23 C -0.068 4.068 24 C -0.223 4.223 25 S 0.129 5.871 26 C -0.014 4.014 27 N -0.529 5.529 28 H 0.421 0.579 29 C 0.118 3.882 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.361 0.639 34 H 0.260 0.740 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.158 0.842 40 H 0.146 0.854 41 H 0.170 0.830 42 H 0.084 0.916 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.159 -1.717 -30.330 30.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.081 3.919 3 H 0.077 0.923 4 N -0.391 5.391 5 C -0.374 4.374 6 H 0.108 0.892 7 C -0.189 4.189 8 N -0.580 5.580 9 Si 0.711 3.289 10 H -0.209 1.209 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.126 4.126 14 H 0.100 0.900 15 C -0.159 4.159 16 C -0.037 4.037 17 N -0.351 5.351 18 C 0.387 3.613 19 O -0.393 6.393 20 C -0.113 4.113 21 C -0.098 4.098 22 C -0.175 4.175 23 C -0.099 4.099 24 C -0.357 4.357 25 S 0.382 5.618 26 C -0.243 4.243 27 N -0.137 5.137 28 H 0.265 0.735 29 C -0.003 4.003 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.194 0.806 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.175 0.825 40 H 0.163 0.837 41 H 0.188 0.812 42 H 0.102 0.898 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.394 -1.195 -30.455 30.481 hybrid contribution 0.980 -1.647 0.865 2.103 sum 1.374 -2.842 -29.590 29.758 Atomic orbital electron populations 1.22417 0.98516 1.00953 1.00586 1.20124 0.92136 0.95452 0.84235 0.92293 1.42786 1.79831 1.09395 1.07121 1.19017 1.37261 0.95459 0.85629 0.89186 1.24656 1.01263 0.97425 0.95562 1.69693 1.52427 1.35604 1.00296 0.86607 0.78707 0.86762 0.76792 1.20854 1.21774 1.20386 1.22746 0.94025 1.00443 0.95427 0.89956 1.22657 0.97232 1.01597 0.94371 1.22265 0.87871 0.98075 0.95517 1.48489 1.14906 1.62539 1.09175 1.16596 0.81379 0.78021 0.85329 1.90914 1.41437 1.48795 1.58166 1.20049 0.92097 1.10770 0.88421 1.20751 0.97777 1.01135 0.90126 1.19395 0.94118 1.09913 0.94083 1.20351 1.00431 1.00100 0.88987 1.24862 0.97753 1.10280 1.02764 1.83903 1.17827 1.69797 0.90259 1.23631 0.98626 1.09848 0.92154 1.42191 1.16742 1.52545 1.02256 0.73459 1.22354 0.95150 1.03612 0.79161 0.92158 0.94110 0.93590 0.80644 0.93031 0.89558 0.89656 0.91466 0.91680 0.82453 0.83685 0.81228 0.89804 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.34 37.16 0.35 -2.21 16 2 C 0.19 3.24 2.41 -67.93 -0.16 3.08 16 3 H 0.06 1.05 8.05 -51.92 -0.42 0.63 16 4 N -0.75 -16.67 4.62 -53.42 -0.25 -16.92 16 5 C -0.24 -6.64 10.41 -15.06 -0.16 -6.79 16 6 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 7 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 8 N -0.93 -29.09 13.97 55.49 0.78 -28.31 16 9 Si 0.88 22.18 27.74 -169.99 -4.71 17.47 16 10 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 13 C -0.11 -1.44 2.63 -88.47 -0.23 -1.67 16 14 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 15 C -0.12 -1.14 5.59 -24.89 -0.14 -1.28 16 16 C 0.09 0.79 5.10 -3.06 -0.02 0.78 16 17 N -0.62 -8.24 3.33 -172.12 -0.57 -8.82 16 18 C 0.60 9.05 7.81 -12.94 -0.10 8.95 16 19 O -0.52 -9.78 17.11 5.16 0.09 -9.70 16 20 C 0.00 0.00 6.82 -82.47 -0.56 -0.57 16 21 C -0.07 -0.86 10.58 -38.81 -0.41 -1.27 16 22 C -0.16 -1.78 6.80 -105.46 -0.72 -2.50 16 23 C -0.07 -0.57 10.42 -38.55 -0.40 -0.97 16 24 C -0.22 -1.55 11.03 28.84 0.32 -1.23 16 25 S 0.13 0.98 23.24 -107.50 -2.50 -1.52 16 26 C -0.01 -0.14 8.41 -15.05 -0.13 -0.27 16 27 N -0.53 -5.35 5.69 -7.94 -0.05 -5.39 16 28 H 0.42 3.27 4.83 -40.82 -0.20 3.07 16 29 C 0.12 1.83 6.08 -2.53 -0.02 1.81 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.04 0.50 7.50 -51.93 -0.39 0.11 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.36 8.08 5.66 -40.82 -0.23 7.85 16 34 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 35 H 0.09 0.65 8.13 -51.93 -0.42 0.23 16 36 H 0.08 0.78 8.01 -51.93 -0.42 0.36 16 37 H 0.07 0.51 7.24 -51.93 -0.38 0.13 16 38 H 0.07 0.49 7.04 -51.93 -0.37 0.13 16 39 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.08 1.50 8.04 -51.93 -0.42 1.08 16 43 H 0.08 1.34 8.04 -51.92 -0.42 0.92 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -33.89 362.86 -10.00 -43.89 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.78 Total: 7.85 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -2.47 Total: -4.02 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -0.09 Total: -59.44 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.47 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.50 Total: -1.52 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.89 -10.00 -43.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271509794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.565 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds