Wall clock time and date at job start Tue Mar 31 2020 18:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09010 * 109.46949 * 2 1 4 4 N 1.46493 * 109.47247 * 120.00448 * 2 1 3 5 5 C 1.36942 * 119.99871 * 275.00318 * 4 2 1 6 6 H 1.08003 * 119.99997 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99841 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99814 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00333 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47063 * 89.99558 * 9 7 5 11 11 H 1.48491 * 109.47185 * 210.00050 * 9 7 5 12 12 H 1.48511 * 109.46720 * 329.99842 * 9 7 5 13 13 C 1.53003 * 109.47187 * 240.00659 * 2 1 3 14 14 H 1.08998 * 110.88290 * 302.42510 * 13 2 1 15 15 C 1.55157 * 111.00557 * 66.34745 * 13 2 1 16 16 C 1.54336 * 103.01759 * 153.37912 * 15 13 2 17 17 N 1.47019 * 107.26643 * 338.13991 * 16 15 13 18 18 C 1.34774 * 125.64405 * 178.84721 * 17 16 15 19 19 O 1.21728 * 120.00021 * 179.69270 * 18 17 16 20 20 C 1.46493 * 120.00495 * 359.69607 * 18 17 16 21 21 C 1.36112 * 125.71620 * 180.02562 * 20 18 17 22 22 C 1.42228 * 107.63027 * 179.97438 * 21 20 18 23 23 C 1.45589 * 140.78311 * 179.97438 * 22 21 20 24 24 C 1.31815 * 114.63548 * 180.02562 * 23 22 21 25 25 S 1.75354 * 111.24278 * 359.97438 * 24 23 22 26 26 C 1.38179 * 106.99388 * 359.75929 * 22 21 20 27 27 N 1.37464 * 108.16741 * 0.38901 * 26 22 21 28 28 H 0.97001 * 125.68708 * 179.87706 * 27 26 22 29 29 C 1.47419 * 108.70491 * 358.58790 * 17 16 15 30 30 H 1.08992 * 109.47171 * 299.99861 * 1 2 3 31 31 H 1.09001 * 109.46864 * 59.99507 * 1 2 3 32 32 H 1.09000 * 109.46486 * 179.97438 * 1 2 3 33 33 H 0.96996 * 120.00122 * 95.00254 * 4 2 1 34 34 H 0.96996 * 120.00155 * 180.02562 * 8 7 5 35 35 H 1.08998 * 110.72178 * 271.94211 * 15 13 2 36 36 H 1.08999 * 110.71791 * 35.03850 * 15 13 2 37 37 H 1.08999 * 109.99067 * 218.65996 * 16 15 13 38 38 H 1.09006 * 109.77338 * 97.50120 * 16 15 13 39 39 H 1.07997 * 126.18446 * 359.95712 * 21 20 18 40 40 H 1.08000 * 122.67800 * 0.02562 * 23 22 21 41 41 H 1.07999 * 124.37488 * 179.97438 * 24 23 22 42 42 H 1.08998 * 110.37053 * 143.19472 * 29 17 16 43 43 H 1.09009 * 110.36452 * 265.40375 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1491 -0.0076 2.3757 6 1 1.8926 1.0404 2.4242 7 6 2.6113 -0.6622 3.5092 8 7 2.7375 -0.0055 4.6429 9 14 3.0557 -2.4746 3.4252 10 1 4.4886 -2.6166 3.0619 11 1 2.8156 -3.1049 4.7481 12 1 2.2161 -3.1430 2.3987 13 6 2.0401 -0.7211 -1.2493 14 1 1.6548 -1.7397 -1.2945 15 6 1.6776 0.0690 -2.5345 16 6 2.7789 -0.3585 -3.5277 17 7 3.9165 -0.8461 -2.7344 18 6 5.0708 -1.3318 -3.2327 19 8 5.9507 -1.7037 -2.4782 20 6 5.2666 -1.4120 -4.6822 21 6 6.3803 -1.8808 -5.3088 22 6 6.1583 -1.7855 -6.7104 23 6 6.8183 -2.0618 -7.9783 24 6 6.1063 -1.7599 -9.0457 25 16 4.5427 -1.1021 -8.6012 26 6 4.8931 -1.2578 -6.8839 27 7 4.3518 -1.0250 -5.6420 28 1 3.4722 -0.6547 -5.4685 29 6 3.5882 -0.7101 -1.3037 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 2.2491 -1.6318 1.1524 34 1 3.0608 -0.4628 5.4348 35 1 0.6921 -0.2199 -2.8998 36 1 1.7200 1.1428 -2.3519 37 1 3.0869 0.4945 -4.1323 38 1 2.4062 -1.1560 -4.1707 39 1 7.2715 -2.2570 -4.8285 40 1 7.8119 -2.4807 -8.0394 41 1 6.4424 -1.8996 -10.0625 42 1 3.9935 -1.5502 -0.7398 43 1 3.9765 0.2307 -0.9131 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271509794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:18 Heat of formation + Delta-G solvation = 39.160878 kcal Electronic energy + Delta-G solvation = -25766.911668 eV Core-core repulsion = 22132.220427 eV Total energy + Delta-G solvation = -3634.691241 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.56466 -40.84599 -39.14189 -37.08016 -36.29921 -34.36907 -32.51870 -31.67980 -30.49564 -30.44398 -28.93836 -25.81020 -25.47327 -23.92797 -22.95653 -22.70787 -21.36196 -21.31015 -20.39744 -19.71450 -19.25056 -17.91011 -17.50390 -16.81443 -16.64505 -16.12371 -16.08716 -15.59071 -15.50145 -15.39655 -15.02453 -14.68479 -14.59037 -14.33528 -14.12026 -13.95039 -13.79157 -13.60634 -13.31049 -13.02862 -12.87076 -12.70164 -12.63890 -12.42428 -12.15436 -11.96945 -11.85777 -11.77360 -11.72830 -11.50394 -11.37658 -11.00440 -10.61484 -9.93696 -9.31760 -9.31259 -8.65859 -8.02682 -5.34127 0.06039 0.12012 0.40417 1.05518 1.33991 1.38604 1.43298 1.62848 1.75112 2.10521 2.23390 2.46528 3.16878 3.29996 3.43710 3.48594 3.74480 3.77235 3.91732 3.98527 4.05171 4.20062 4.36848 4.41558 4.49326 4.57044 4.60868 4.74599 4.75288 4.79030 4.86200 4.91630 5.04937 5.09357 5.14584 5.19146 5.26095 5.36027 5.40430 5.60657 5.60987 5.79143 6.09531 6.21994 6.25071 6.81669 7.08815 7.86449 8.02200 9.19059 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022598 B = 0.002557 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.763552 B =10949.110536 C =11883.449545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.183 3.817 3 H 0.049 0.951 4 N -0.754 5.754 5 C -0.217 4.217 6 H 0.061 0.939 7 C -0.064 4.064 8 N -0.984 5.984 9 Si 0.944 3.056 10 H -0.289 1.289 11 H -0.297 1.297 12 H -0.251 1.251 13 C -0.096 4.096 14 H 0.089 0.911 15 C -0.108 4.108 16 C 0.080 3.920 17 N -0.614 5.614 18 C 0.594 3.406 19 O -0.572 6.572 20 C -0.015 4.015 21 C -0.083 4.083 22 C -0.182 4.182 23 C -0.089 4.089 24 C -0.211 4.211 25 S 0.167 5.833 26 C -0.022 4.022 27 N -0.518 5.518 28 H 0.432 0.568 29 C 0.118 3.882 30 H 0.030 0.970 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.362 0.638 34 H 0.256 0.744 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.152 0.848 40 H 0.162 0.838 41 H 0.203 0.797 42 H 0.051 0.949 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.566 -2.289 -35.195 35.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.397 5.397 5 C -0.348 4.348 6 H 0.079 0.921 7 C -0.255 4.255 8 N -0.635 5.635 9 Si 0.773 3.227 10 H -0.216 1.216 11 H -0.224 1.224 12 H -0.176 1.176 13 C -0.116 4.116 14 H 0.108 0.892 15 C -0.146 4.146 16 C -0.042 4.042 17 N -0.347 5.347 18 C 0.384 3.616 19 O -0.452 6.452 20 C -0.128 4.128 21 C -0.111 4.111 22 C -0.194 4.194 23 C -0.119 4.119 24 C -0.345 4.345 25 S 0.420 5.580 26 C -0.252 4.252 27 N -0.128 5.128 28 H 0.278 0.722 29 C -0.005 4.005 30 H 0.049 0.951 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.194 0.806 34 H 0.064 0.936 35 H 0.140 0.860 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.169 0.831 40 H 0.179 0.821 41 H 0.220 0.780 42 H 0.069 0.931 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.410 -1.747 -35.415 35.486 hybrid contribution 1.513 -1.353 2.184 2.982 sum 0.102 -3.101 -33.230 33.375 Atomic orbital electron populations 1.22264 0.96380 1.01475 1.01322 1.20403 0.93459 0.94928 0.83722 0.93282 1.42868 1.80104 1.09457 1.07280 1.19006 1.34225 0.94386 0.87199 0.92069 1.25390 1.02852 1.01813 0.95480 1.69859 1.55104 1.37432 1.01151 0.85563 0.78223 0.81922 0.76998 1.21572 1.22362 1.17550 1.22567 0.92072 1.01180 0.95754 0.89228 1.22708 0.98933 1.01408 0.91574 1.22594 0.86239 0.99810 0.95508 1.48503 1.15578 1.61863 1.08722 1.16962 0.81113 0.77337 0.86186 1.90871 1.43314 1.51348 1.59635 1.19601 0.93211 1.12636 0.87388 1.20899 0.97722 1.01172 0.91351 1.19707 0.95117 1.10440 0.94178 1.20543 1.01630 1.01481 0.88206 1.25333 0.97079 1.08143 1.03896 1.83867 1.17756 1.69010 0.87366 1.24111 0.98585 1.09088 0.93385 1.42013 1.16736 1.52298 1.01755 0.72187 1.22165 0.96725 1.01167 0.80412 0.95094 0.89704 0.93134 0.80568 0.93556 0.85987 0.88890 0.89117 0.89114 0.83057 0.82063 0.78041 0.93072 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 9.34 71.98 0.67 -3.74 16 2 C 0.18 6.02 2.41 44.99 0.11 6.13 16 3 H 0.05 1.72 8.05 -2.38 -0.02 1.70 16 4 N -0.75 -33.66 4.62 -322.93 -1.49 -35.15 16 5 C -0.22 -12.13 10.41 84.03 0.87 -11.26 16 6 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 7 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 8 N -0.98 -63.88 13.97 21.65 0.30 -63.58 16 9 Si 0.94 47.04 27.74 68.60 1.90 48.95 16 10 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 11 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 12 H -0.25 -11.22 6.52 99.48 0.65 -10.57 16 13 C -0.10 -2.40 2.63 -9.40 -0.02 -2.42 16 14 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 15 C -0.11 -1.59 5.59 31.79 0.18 -1.41 16 16 C 0.08 1.20 5.10 86.73 0.44 1.64 16 17 N -0.61 -16.00 3.33 -816.66 -2.72 -18.72 16 18 C 0.59 18.35 7.81 86.39 0.68 19.03 16 19 O -0.57 -22.98 17.11 -4.44 -0.08 -23.05 16 20 C -0.02 -0.38 6.82 39.81 0.27 -0.11 16 21 C -0.08 -2.06 10.58 22.77 0.24 -1.82 16 22 C -0.18 -3.73 6.80 -20.41 -0.14 -3.87 16 23 C -0.09 -1.27 10.42 23.39 0.24 -1.02 16 24 C -0.21 -2.15 11.03 67.04 0.74 -1.41 16 25 S 0.17 1.91 23.24 -56.49 -1.31 0.60 16 26 C -0.02 -0.40 8.41 83.80 0.70 0.30 16 27 N -0.52 -9.35 5.69 -179.03 -1.02 -10.37 16 28 H 0.43 5.26 4.83 -92.71 -0.45 4.81 16 29 C 0.12 3.68 6.08 86.86 0.53 4.21 16 30 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.68 7.50 -2.39 -0.02 1.67 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.36 16.02 5.66 -92.71 -0.52 15.49 16 34 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 35 H 0.12 1.04 8.13 -2.39 -0.02 1.02 16 36 H 0.09 1.29 8.01 -2.39 -0.02 1.27 16 37 H 0.09 1.00 7.24 -2.39 -0.02 0.98 16 38 H 0.09 0.96 7.04 -2.38 -0.02 0.94 16 39 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 40 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 41 H 0.20 0.69 8.06 -2.91 -0.02 0.67 16 42 H 0.05 1.91 8.04 -2.39 -0.02 1.90 16 43 H 0.06 2.10 8.04 -2.38 -0.02 2.08 16 Total: -1.00 -79.40 362.86 1.59 -77.81 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.02 Total: 22.61 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 5.98 Total: 0.90 kcal Atomic # 7 Polarization: -122.88 SS G_CDS: -4.92 Total: -127.81 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.08 Total: -23.05 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.90 Total: 48.95 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -1.31 Total: 0.60 kcal Total: -79.40 1.59 -77.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271509794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.971 kcal (2) G-P(sol) polarization free energy of solvation -79.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds