Wall clock time and date at job start Tue Mar 31 2020 18:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47191 * 2 1 4 4 N 1.46497 * 109.47421 * 119.99899 * 2 1 3 5 5 C 1.36934 * 120.00320 * 274.99943 * 4 2 1 6 6 H 1.08005 * 119.99820 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00426 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99573 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00293 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46796 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46986 * 120.00562 * 9 7 5 12 12 H 1.48499 * 109.46871 * 240.00374 * 9 7 5 13 13 C 1.53003 * 109.46933 * 240.00070 * 2 1 3 14 14 H 1.09003 * 110.91506 * 299.17992 * 13 2 1 15 15 C 1.55159 * 111.00239 * 175.27790 * 13 2 1 16 16 C 1.54320 * 102.94018 * 206.42272 * 15 13 2 17 17 N 1.47188 * 107.29632 * 22.28801 * 16 15 13 18 18 C 1.34775 * 125.73575 * 181.02725 * 17 16 15 19 19 O 1.21726 * 119.99599 * 179.86308 * 18 17 16 20 20 C 1.46493 * 120.00150 * 359.85863 * 18 17 16 21 21 C 1.36112 * 125.71248 * 179.71665 * 20 18 17 22 22 C 1.42231 * 107.62807 * 179.88602 * 21 20 18 23 23 C 1.45592 * 140.77888 * 180.02562 * 22 21 20 24 24 C 1.31817 * 114.63035 * 180.32276 * 23 22 21 25 25 S 1.75348 * 111.24355 * 359.97438 * 24 23 22 26 26 C 1.38178 * 106.99223 * 0.37747 * 22 21 20 27 27 N 1.37461 * 108.16901 * 359.76927 * 26 22 21 28 28 H 0.96998 * 125.68158 * 180.02562 * 27 26 22 29 29 C 1.47428 * 108.61319 * 0.90782 * 17 16 15 30 30 H 1.09003 * 109.46903 * 294.77518 * 1 2 3 31 31 H 1.08999 * 109.47207 * 54.77449 * 1 2 3 32 32 H 1.09001 * 109.47301 * 174.77651 * 1 2 3 33 33 H 0.97005 * 119.99940 * 94.99830 * 4 2 1 34 34 H 0.97007 * 119.99491 * 179.97438 * 8 7 5 35 35 H 1.09000 * 110.72321 * 324.78697 * 15 13 2 36 36 H 1.08994 * 110.71843 * 88.06171 * 15 13 2 37 37 H 1.09009 * 109.88063 * 141.61196 * 16 15 13 38 38 H 1.08998 * 109.88753 * 262.62333 * 16 15 13 39 39 H 1.07998 * 126.18333 * 0.02562 * 21 20 18 40 40 H 1.07993 * 122.68024 * 0.34160 * 23 22 21 41 41 H 1.07996 * 124.37609 * 179.97438 * 24 23 22 42 42 H 1.08996 * 110.36466 * 217.11944 * 29 17 16 43 43 H 1.09000 * 110.36681 * 94.90015 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8920 1.0404 2.4243 7 6 2.6115 -0.6619 3.5092 8 7 2.9245 -1.9390 3.4500 9 14 2.7893 0.2698 5.1185 10 1 2.3744 1.6819 4.9213 11 1 1.9283 -0.3590 6.1522 12 1 4.2061 0.2269 5.5613 13 6 2.0400 -0.7213 -1.2493 14 1 1.7016 -1.7573 -1.2658 15 6 3.5864 -0.6396 -1.3463 16 6 3.8443 -0.7602 -2.8630 17 7 2.6067 -0.3581 -3.5507 18 6 2.4165 -0.3443 -4.8849 19 8 1.3448 0.0066 -5.3432 20 6 3.4995 -0.7514 -5.7835 21 6 3.4332 -0.7870 -7.1425 22 6 4.6947 -1.2342 -7.6237 23 6 5.3888 -1.5218 -8.8709 24 6 6.6294 -1.9426 -8.7247 25 16 7.0757 -2.0289 -7.0312 26 6 5.4900 -1.4653 -6.5176 27 7 4.7568 -1.1693 -5.3932 28 1 5.0704 -1.2415 -4.4781 29 6 1.6078 0.0247 -2.5363 30 1 -0.3633 0.4307 0.9331 31 1 -0.3633 0.5927 -0.8395 32 1 -0.3634 -1.0234 -0.0936 33 1 2.2491 -1.6318 1.1526 34 1 3.2479 -2.3962 4.2421 35 1 3.9465 0.3175 -0.9688 36 1 4.0506 -1.4666 -0.8091 37 1 4.6601 -0.0984 -3.1540 38 1 4.0949 -1.7905 -3.1156 39 1 2.5782 -0.5212 -7.7464 40 1 4.9244 -1.3997 -9.8382 41 1 7.2860 -2.2008 -9.5424 42 1 0.6125 -0.2957 -2.8443 43 1 1.6255 1.1024 -2.3743 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271509795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:25 Heat of formation + Delta-G solvation = 56.108022 kcal Electronic energy + Delta-G solvation = -25580.669443 eV Core-core repulsion = 21946.713085 eV Total energy + Delta-G solvation = -3633.956358 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -41.67161 -39.76819 -37.85272 -35.74102 -35.25362 -32.55457 -30.83386 -30.72509 -29.64969 -28.69125 -27.39113 -25.00718 -23.77341 -23.15079 -21.94991 -21.54834 -20.39868 -19.75024 -19.58719 -18.49903 -17.27611 -16.85572 -16.40905 -15.71298 -15.37792 -15.13568 -14.81817 -14.66971 -14.21201 -13.95950 -13.79535 -13.55425 -13.29179 -13.13490 -12.80944 -12.65672 -12.52639 -12.24776 -12.14536 -11.92515 -11.81268 -11.31074 -11.11041 -10.96292 -10.83849 -10.67907 -10.53356 -10.30618 -10.25098 -9.93608 -9.77982 -9.71087 -8.98709 -8.86331 -8.56834 -7.94655 -7.03653 -5.83680 -3.12363 0.78580 1.04097 1.12764 1.69409 2.60045 2.66515 2.93393 3.20290 3.38218 3.44719 3.46390 4.14008 4.46527 4.51300 4.52958 4.66719 4.76630 4.85302 5.06947 5.13064 5.18908 5.31649 5.43451 5.45281 5.52776 5.75020 5.77905 5.80861 5.85413 5.87397 5.92238 6.06551 6.10371 6.18803 6.22793 6.34807 6.43812 6.46635 6.56749 6.79620 6.85989 7.03201 7.28091 7.64713 7.91217 8.34744 9.46489 10.02665 10.37572 11.38917 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.020082 B = 0.002365 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.963339 B =11837.306637 C =13000.311047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.186 3.814 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.236 4.236 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.102 4.102 14 H 0.083 0.917 15 C -0.113 4.113 16 C 0.083 3.917 17 N -0.614 5.614 18 C 0.601 3.399 19 O -0.526 6.526 20 C -0.002 4.002 21 C -0.070 4.070 22 C -0.164 4.164 23 C -0.069 4.069 24 C -0.223 4.223 25 S 0.132 5.868 26 C -0.012 4.012 27 N -0.528 5.528 28 H 0.423 0.577 29 C 0.115 3.885 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.046 0.954 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.157 0.843 40 H 0.145 0.855 41 H 0.170 0.830 42 H 0.082 0.918 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.380 0.036 -23.424 24.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.367 4.367 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.122 4.122 14 H 0.101 0.899 15 C -0.151 4.151 16 C -0.040 4.040 17 N -0.348 5.348 18 C 0.390 3.610 19 O -0.402 6.402 20 C -0.115 4.115 21 C -0.098 4.098 22 C -0.177 4.177 23 C -0.100 4.100 24 C -0.357 4.357 25 S 0.385 5.615 26 C -0.241 4.241 27 N -0.136 5.136 28 H 0.267 0.733 29 C -0.007 4.007 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.175 0.825 40 H 0.163 0.837 41 H 0.188 0.812 42 H 0.100 0.900 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.086 -0.039 -22.686 24.084 hybrid contribution -0.793 0.390 0.703 1.129 sum 7.293 0.350 -21.984 23.164 Atomic orbital electron populations 1.22499 0.99094 1.00711 1.00579 1.20127 0.91924 0.95141 0.85280 0.93182 1.42373 1.78179 1.10651 1.05136 1.19255 1.36359 0.93886 0.87241 0.91140 1.24724 1.02214 0.95956 0.98022 1.69666 1.50998 1.08644 1.28805 0.86150 0.77287 0.78832 0.84119 1.20570 1.21906 1.21912 1.22701 0.94744 1.00532 0.94211 0.89869 1.22575 0.96929 1.04595 0.90983 1.22407 0.87021 0.98978 0.95607 1.48500 1.15668 1.65794 1.04811 1.16581 0.86189 0.78185 0.80068 1.90872 1.25298 1.48741 1.75324 1.20008 0.85638 1.11617 0.94252 1.20718 0.96459 1.01272 0.91374 1.19400 0.95455 1.11254 0.91546 1.20330 0.93312 0.99279 0.97061 1.24876 1.00531 1.11482 0.98791 1.83985 1.05851 1.71761 0.99853 1.23648 0.99595 1.10489 0.90388 1.42230 1.10071 1.53965 1.07358 0.73264 1.22377 0.92225 0.99722 0.86375 0.92454 0.94298 0.93523 0.78314 0.93575 0.89749 0.89046 0.91603 0.91571 0.82515 0.83738 0.81239 0.89995 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 9.22 37.16 0.34 -2.53 16 2 C 0.19 3.32 2.40 -67.93 -0.16 3.16 16 3 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 4 N -0.72 -16.57 4.90 -53.43 -0.26 -16.83 16 5 C -0.24 -6.18 9.93 -15.06 -0.15 -6.33 16 6 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.00 13.06 55.49 0.72 -26.28 16 9 Si 0.90 21.70 29.55 -169.99 -5.02 16.68 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 C -0.10 -1.49 2.64 -88.47 -0.23 -1.72 16 14 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.11 -1.49 6.21 -24.90 -0.15 -1.64 16 16 C 0.08 0.90 5.10 -2.98 -0.02 0.89 16 17 N -0.61 -8.02 3.33 -171.99 -0.57 -8.60 16 18 C 0.60 8.63 7.82 -12.94 -0.10 8.53 16 19 O -0.53 -9.04 17.10 5.17 0.09 -8.95 16 20 C 0.00 -0.03 6.82 -82.47 -0.56 -0.59 16 21 C -0.07 -0.84 10.58 -38.81 -0.41 -1.25 16 22 C -0.16 -1.81 6.80 -105.45 -0.72 -2.53 16 23 C -0.07 -0.59 10.42 -38.55 -0.40 -0.99 16 24 C -0.22 -1.62 11.03 28.84 0.32 -1.30 16 25 S 0.13 1.09 23.24 -107.50 -2.50 -1.41 16 26 C -0.01 -0.13 8.41 -15.05 -0.13 -0.26 16 27 N -0.53 -5.68 5.70 -7.94 -0.05 -5.73 16 28 H 0.42 3.80 4.84 -40.82 -0.20 3.60 16 29 C 0.12 1.56 5.48 -2.53 -0.01 1.55 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.04 0.56 7.58 -51.93 -0.39 0.17 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.38 9.40 7.80 -40.82 -0.32 9.08 16 34 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.08 1.17 8.03 -51.93 -0.42 0.75 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.07 0.61 7.21 -51.92 -0.37 0.24 16 38 H 0.07 0.64 7.08 -51.93 -0.37 0.27 16 39 H 0.16 1.70 8.06 -52.49 -0.42 1.27 16 40 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.08 1.15 8.04 -51.93 -0.42 0.74 16 43 H 0.07 0.98 8.03 -51.93 -0.42 0.57 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -31.24 366.12 -10.38 -41.63 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.83 Total: 9.43 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -2.48 Total: -5.47 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.16 Total: -57.43 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.50 Total: -1.41 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.24 -10.38 -41.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271509795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.735 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds